Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq618 284 2e-74
seq3688 248 1e-63
seq137676 114 2e-23
>seq618
Length=12052
Score = 284 bits (314), Expect = 2e-74
Identities = 220/259 (85%), Gaps = 2/259 (1%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 1603
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | || ||| | ||||||||||||||||| |||
Sbjct 1602 CCTGTTATTGCCTCAAACTTCCGCGGCCTAAAAGGCCGTAGTCCCTCTAAGAAGCTGGCC 1543
Query 122 ACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | ||| || |||| |||||||| | ||||||||||||||| |||||||
Sbjct 1542 GCGGAGGGATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATT 1483
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1482 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCTCG 1423
Query 240 AAAGAGCTATCAATCTGTC 258
|||||||| ||| ||||||
Sbjct 1422 AAAGAGCTCTCAGTCTGTC 1404
Score = 118 bits (130), Expect = 2e-24
Identities = 74/80 (93%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 157 AGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCAT 216
||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 9842 AGGTCTCGTCGTTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCAT 9783
Query 217 GCACCACCACCCATAGAATC 236
||||||||||||||| ||||
Sbjct 9782 GCACCACCACCCATAAAATC 9763
>seq3688
Length=5029
Score = 248 bits (274), Expect = 1e-63
Identities = 212/258 (82%), Gaps = 3/258 (1%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || | | |||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 4773 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACAT-TAAGGGCATCATAGA 4831
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
||||||||||||||||||||||| || ||| ||||||||||||||||| ||
Sbjct 4832 CCTGTTATTGCCTCAAACTTCCACGACCTAAAAGGATGTAGTCCCTCTAAGAAGCTGGCT 4891
Query 122 ACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179
| | ||| || |||| |||||| | ||||||||| ||||||| |||||||
Sbjct 4892 GCGGAGGGATACCTCCGCATAGCTAGTTAGCAAGCTAAGGTCTCATTCGTTAACGGAATT 4951
Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 4952 AATCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCTATAGAATATCG 5011
Query 240 AAAGAGCTATCAATCTGT 257
|||||||| ||| |||||
Sbjct 5012 AAAGAGCTCTCAGTCTGT 5029
>seq137676
Length=979
Score = 114 bits (126), Expect = 2e-23
Identities = 72/78 (92%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 24 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 961
Query 84 ATTGGCTGGAAGCCAATA 101
|| | || || | | |||
Sbjct 962 ATGGCCTAGACGGCCATA 979
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795326628156
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |