Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq618 408 7e-112 seq3688 333 5e-89 seq176413 156 7e-36 seq47791 98.7 2e-18 >seq618 Length=12052 Score = 408 bits (452), Expect = 7e-112 Identities = 267/293 (91%), Gaps = 1/293 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 5624 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 5566 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 5565 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 5506 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5505 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 5446 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 5445 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 5386 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||| ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 5385 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 5333 >seq3688 Length=5029 Score = 333 bits (368), Expect = 5e-89 Identities = 249/293 (85%), Gaps = 13/293 (4%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | ||||| |||||||||||||| Sbjct 3664 TACTAGGTTGAATTACTATTGCGAC-AGTGTCATTAGTAGGGTAAAACT----------- 3711 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||| |||||||||| |||||||||||||||||| ||| || Sbjct 3712 -GACGGTCTAAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3770 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3771 ATTCTGCTTCACAGTGAAAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3830 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 |||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| | Sbjct 3831 GAACGCTTGGCTACCACAAGCCAGTTATCCTTGTGGTAACTTTTCTGACACCTCTAGCTT 3890 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||||| || ||||||||||| |||||||| |||||| |||| ||||| Sbjct 3891 CAAATTTCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCATATTC 3943 >seq176413 Length=469 Score = 156 bits (172), Expect = 7e-36 Identities = 89/91 (98%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 379 TACTAAGCGGAATTACCATTGGGACGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 438 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||||||||||||||||||||||||||| Sbjct 439 CGACGGTCTAAACCCAGCTCACGTTCCCTAT 469 >seq47791 Length=3212 Score = 98.7 bits (108), Expect = 2e-18 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 ||||||||||||||| ||||||||||||||| |||||||||| |||||| | ||| |||| Sbjct 1891 ATCAAAAAGCAACGTTGCTATGAACGCTTGGATGCCACAAGCAAGTTATTCATGTCGTAA 1832 Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263 | || | || ||||||| | ||||| | || |||||| || Sbjct 1831 TTCTTTTAACATCTCTAGCTTTAAATTCTAAAGGTCTAAAGAAT 1788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852769155456