Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq618 408 7e-112
seq3688 333 5e-89
seq176413 156 7e-36
seq47791 98.7 2e-18
>seq618
Length=12052
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 5624 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 5566
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 5565 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 5506
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 5505 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 5446
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 5445 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 5386
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || ||||||||||| |||||||| |||||| |||| ||||||
Sbjct 5385 CAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 5333
>seq3688
Length=5029
Score = 333 bits (368), Expect = 5e-89
Identities = 249/293 (85%), Gaps = 13/293 (4%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | | ||||| ||||||||||||||
Sbjct 3664 TACTAGGTTGAATTACTATTGCGAC-AGTGTCATTAGTAGGGTAAAACT----------- 3711
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
|||||||||||||||||||| |||||||||| |||||||||||||||||| ||| ||
Sbjct 3712 -GACGGTCTAAACCCAGCTCATGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3770
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3771 ATTCTGCTTCACAGTGAAAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3830
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
|||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |
Sbjct 3831 GAACGCTTGGCTACCACAAGCCAGTTATCCTTGTGGTAACTTTTCTGACACCTCTAGCTT 3890
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||||||| || ||||||||||| |||||||| |||||| |||| |||||
Sbjct 3891 CAAATTTCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCATATTC 3943
>seq176413
Length=469
Score = 156 bits (172), Expect = 7e-36
Identities = 89/91 (98%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 379 TACTAAGCGGAATTACCATTGGGACGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 438
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
||||||||||||||||||||||||||||||
Sbjct 439 CGACGGTCTAAACCCAGCTCACGTTCCCTAT 469
>seq47791
Length=3212
Score = 98.7 bits (108), Expect = 2e-18
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
||||||||||||||| ||||||||||||||| |||||||||| |||||| | ||| ||||
Sbjct 1891 ATCAAAAAGCAACGTTGCTATGAACGCTTGGATGCCACAAGCAAGTTATTCATGTCGTAA 1832
Query 220 CTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGAT 263
| || | || ||||||| | ||||| | || |||||| ||
Sbjct 1831 TTCTTTTAACATCTCTAGCTTTAAATTCTAAAGGTCTAAAGAAT 1788
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 852769155456
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |