Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq3962 226 6e-57
seq5414 203 7e-50
seq23440 138 2e-30
seq167522 123 5e-26
>seq3962
Length=38492
Score = 226 bits (250), Expect = 6e-57
Identities = 239/309 (77%), Gaps = 18/309 (6%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || ||||||||||||||||||
Sbjct 28475 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 28417
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 28416 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 28357
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
|| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | |
Sbjct 28356 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCT 28297
Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268
| | || | || ||| | || || || || | || | |||||||||
Sbjct 28296 C--------CTCGGGCGGA--TTCCTCCTTTTGCT-CCTCAG--CCTACGGGGTATTAGC 28250
Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326
|||||||| ||| | ||| || ||| ||||| ||| || || |||||||||||
Sbjct 28249 AGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 28192
Query 327 TCCGCCGCT 335
|||||| ||
Sbjct 28191 TCCGCCACT 28183
>seq5414
Length=36579
Score = 203 bits (224), Expect = 7e-50
Identities = 179/220 (81%), Gaps = 4/220 (2%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 5947 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 6004
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 6005 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 6064
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||| ||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 6065 AGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 6124
Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218
|||||||| ||||| | || ||||||||| | |||||
Sbjct 6125 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 6164
>seq23440
Length=1576
Score = 138 bits (152), Expect = 2e-30
Identities = 98/111 (88%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || |||||||||||||||||| || |||||||||||||||| |
Sbjct 1078 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCCACTGCTGCCCC 1136
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTC 139
|||| ||||||||| |||||||||||| |||||||| ||||||||||||||
Sbjct 1137 CCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 1187
>seq167522
Length=1668
Score = 123 bits (136), Expect = 5e-26
Identities = 108/133 (81%), Gaps = 1/133 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||| |||||||| || ||| ||||||||||||||| || |||||||| |||||||||
Sbjct 520 CACCCGGCATTG-CTCCGTCAAGCTTTCGCCCATTGTGGAAAATTCCCCATTGCTGCCTC 462
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|||||||||||| |||| |||||| |||||||| |||||||||||| | ||||
Sbjct 461 TCGTAGGAGTCTGTGTCGTGCCTCAGTCCCAGTGTGGCTGATCATCCTCACTAACCATCA 402
Query 149 ACGGATCGTCGCC 161
|| |||| |||||
Sbjct 401 ACTGATCATCGCC 389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1069953809280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |