Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq3962 215 1e-53
seq5414 132 1e-28
seq23440 118 2e-24
seq167522 100 6e-19
>seq3962
Length=38492
Score = 215 bits (238), Expect = 1e-53
Identities = 232/305 (76%), Gaps = 18/305 (6%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || |||||||||||||||||||||
Sbjct 28470 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 28411
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 28410 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 28351
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||||| ||||||||||| |||||| | ||| ||||| || |
Sbjct 28350 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCAAGCCCCTCCTCGG 28291
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | |||||||||
Sbjct 28290 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TACGGGGTATTAGCAGC 28247
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| ||| || |||||||| || ||| ||||||||||||||||
Sbjct 28246 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 28188
Query 300 CCACT 304
|||||
Sbjct 28187 CCACT 28183
>seq5414
Length=36579
Score = 132 bits (146), Expect = 1e-28
Identities = 121/153 (79%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 5987 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 6046
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | || || || || |||| ||| | ||
Sbjct 6047 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGG 6106
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || ||||||||||||||
Sbjct 6107 CTTGGTCAGCCTTTACCTGACCAACTACCTAAT 6139
>seq23440
Length=1576
Score = 118 bits (130), Expect = 2e-24
Identities = 89/105 (85%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||| | || || ||||||||||||| ||||| |
Sbjct 1083 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAGATTCCCCACTGCTGCCCCCCGTGG 1142
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTC 105
||||||||||||||||||||||||| |||||| | ||| ||||||
Sbjct 1143 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 1187
>seq167522
Length=1668
Score = 100 bits (110), Expect = 6e-19
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||| | |||| ||||||||| || || ||||| ||||||||| |||||
Sbjct 515 GGCATTGCTCCGTCAAGCTTTCGCCCATTGTGGAAAATTCCCCATTGCTGCCTCTCGTAG 456
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTC 103
||||||| | |||| |||||||||| |||||| | ||| ||||
Sbjct 455 GAGTCTGTGTCGTGCCTCAGTCCCAGTGTGGCTGATCATCCTC 413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 996494294016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |