Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3962 268 1e-69 seq21829 187 4e-45 seq115145 167 4e-39 >seq3962 Length=38492 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 34822 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 34763 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 34762 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 34703 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 34702 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 34643 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 34642 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 34583 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 34582 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 34550 >seq21829 Length=24115 Score = 187 bits (206), Expect = 4e-45 Identities = 194/250 (78%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| | | Sbjct 22105 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGTAG- 22047 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||| Sbjct 22046 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTA-GGTTGGCTCCTCGCAGTTCTCCTT 21988 Query 148 --ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTG 205 || || ||| | ||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 21987 TAACACCAACGTAG-ATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTA 21929 Query 206 CCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGA 265 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || || Sbjct 21928 CCACTTAAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGA 21869 Query 266 GCCGACATCG 275 | |||||||| Sbjct 21868 GTCGACATCG 21859 >seq115145 Length=10994 Score = 167 bits (184), Expect = 4e-39 Identities = 189/251 (75%), Gaps = 8/251 (3%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| Sbjct 10707 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAG 10648 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCC-- 146 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 10647 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 10588 Query 147 --TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| || || ||| ||| Sbjct 10587 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTTAAACCCACTCACGT 10528 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||| | ||| |||||||||| || | Sbjct 10527 ACCACTTAAATCGGCGAACA-CCGAACCCTTGGGAC---CCTCAACCCCAGGATGTGATG 10472 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 10471 AGTCGACATCG 10461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 779356213936