Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3962 262 1e-67 seq5414 165 2e-38 seq23440 159 8e-37 seq167522 145 2e-32 >seq3962 Length=38492 Score = 262 bits (290), Expect = 1e-67 Identities = 305/410 (74%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 28501 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 28442 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 28441 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 28382 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||| Sbjct 28381 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCA 28322 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | | ||| || | || ||| ||| |||| Sbjct 28321 ACTAGCTAATCAGACGCAAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 28273 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| |||||||||| ||| | ||||||| |||| Sbjct 28272 TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCA 28215 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 28214 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 28169 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 28168 ---CCGTCCGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 28122 >seq5414 Length=36579 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 5947 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 6006 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 6007 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 6066 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| || ||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 6067 TGTGGCTGATCGTCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 6126 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 6127 CCAACTACCTAAT 6139 >seq23440 Length=1576 Score = 159 bits (176), Expect = 8e-37 Identities = 117/136 (86%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | |||||||||| ||| | |||||||| |||||||| Sbjct 1052 TTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 1111 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||| ||||| ||||||||| |||||||||||| ||||||| Sbjct 1112 GCGGAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 1171 Query 125 GGCTGGTCATCCTCTC 140 ||||| |||||||||| Sbjct 1172 GGCTGATCATCCTCTC 1187 >seq167522 Length=1668 Score = 145 bits (160), Expect = 2e-32 Identities = 125/155 (81%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 8 ACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTG 67 || ||||| |||||||| | | ||| |||||| ||| | ||| |||| ||||||||||| Sbjct 543 ACTACCCGTGGGCCTTCTACCTCCACCCGGCATTGCTCCGTCAAGCTTTCGCCCATTGTG 484 Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 || |||||||| ||||||||| |||||||||||| |||| |||||| |||||||||| Sbjct 483 GAAAATTCCCCATTGCTGCCTCTCGTAGGAGTCTGTGTCGTGCCTCAGTCCCAGTGTGGC 424 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCC 162 || |||||||| | |||| | | |||| ||||| Sbjct 423 TGATCATCCTCACTAACCATCAACTGATCATCGCC 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1220066731776