Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq3962 322 1e-85
seq5414 260 4e-67
seq23440 141 3e-31
>seq3962
Length=38492
Score = 322 bits (356), Expect = 1e-85
Identities = 278/342 (81%), Gaps = 3/342 (1%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||||||||||||||||||||| ||| || |||||||||||||| |||||||||| | |
Sbjct 28305 GCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGTC 28364
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 28365 CGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 28424
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
|||||||||| || | |||||||| ||||||||| | ||||| |||||||| | |||
Sbjct 28425 AGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAA 28484
Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398
|||| |||||||| || ||| | | | ||||| |||||||||| || ||| |
Sbjct 28485 GGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTATCTGGGGAATA 28544
Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458
||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||||
Sbjct 28545 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 28604
Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||| | | |||||||||| || |||||||| || |||||||
Sbjct 28605 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTC 28645
>seq5414
Length=36579
Score = 260 bits (288), Expect = 4e-67
Identities = 256/327 (78%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| |||||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 6139 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 6080
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
|||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 6079 ACGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 6020
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 6019 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 5960
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| ||| ||||| |||||||
Sbjct 5959 GCCGCTTGTAAAGCTCTTTCATCGAGTGCGCGATCATGACAAGACTCGAGGAAGAAGCCC 5900
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 5899 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 5840
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| |||||||||||| |||||| |||
Sbjct 5839 CT-GGGCGTAAAGGGCACGTAGGCGGT 5814
>seq23440
Length=1576
Score = 141 bits (156), Expect = 3e-31
Identities = 113/136 (83%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281
|||||| ||||| |||||| ||| |||||||||||| ||| ||||| ||||| |||||||
Sbjct 1187 GAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCCACGGGGGGCAGCA 1128
Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341
||||||||| || | |||||||| ||||||||| | ||||| |||||||| | ||||
Sbjct 1127 GTGGGGAATCTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAGAAG 1068
Query 342 GCCTTCGGGTCGTAAA 357
||| |||||||| ||
Sbjct 1067 GCCCACGGGTCGTGAA 1052
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1494741441024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |