Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11]
190,876 sequences; 353,287,234 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq618 307 2e-81
seq3688 282 8e-74
seq137676 113 9e-23
seq9685 80.6 5e-13
>seq618
Length=12052
Score = 307 bits (340), Expect = 2e-81
Identities = 230/265 (87%), Gaps = 6/265 (2%)
Strand=Plus/Plus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123
||| ||||||||||||||||| |||| | | |||| |||||||||||||||||||||
Sbjct 1544 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 1601
Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1602 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAG 1661
Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243
|| || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||
Sbjct 1662 TTTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAG 1720
Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303
| |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||
Sbjct 1721 ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC 1780
Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328
||||| |||||||||||||||||||
Sbjct 1781 GTTGACTACGTCCCTGCCCTTTGTA 1805
>seq3688
Length=5029
Score = 282 bits (312), Expect = 8e-74
Identities = 224/264 (85%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTA--TCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124
||| ||||||||||||||||| || | | | || |||||||||||||||||||||||
Sbjct 4890 GCCAGCTTCTTAGAGGGACTACATCCTTTTAGGTCG-TGGAAGTTTGAGGCAATAACAGG 4832
Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184
||| ||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct 4831 TCTATGATGCCCTTA-ATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 4773
Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244
| || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||||||
Sbjct 4772 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 4714
Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304
|||||||||| ||| |||||||| |||||| ||||||| ||||| ||||||||| ||||
Sbjct 4713 TCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTATGCGCGAGTCATCAGCTCGCG 4654
Query 305 TTGATTACGTCCCTGCCCTTTGTA 328
|||| |||||||||||||||||||
Sbjct 4653 TTGACTACGTCCCTGCCCTTTGTA 4630
>seq137676
Length=979
Score = 113 bits (124), Expect = 9e-23
Identities = 67/70 (96%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152
|| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 TCTAGGCCATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 912
Query 153 GCACGCGCGC 162
||||||||||
Sbjct 911 GCACGCGCGC 902
>seq9685
Length=2322
Score = 80.6 bits (88), Expect = 5e-13
Identities = 209/296 (71%), Gaps = 37/296 (13%)
Strand=Plus/Minus
Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAG--CCGATGGAAGTTTGAGG------CAA 117
||| ||||||||||||||||| |||| | || ||| |||||||||||| | |
Sbjct 996 GCCAGCTTCTTAGAGGGACTA-CGGCTTTTAGGCCCGCGGGAAGTTTGAGGCCCCCCCCA 938
Query 118 TAACAGGTC-----TGTGATGCCCTTA-GA-TGTTCTG-GGCCGCACGCGC-GCTACACT 168
||||||| | |||||| ||||| || ||| || |||| |||| ||||||||
Sbjct 937 TAACAGGGCTCTGGTGTGATTGCCTTACGAGTGTCGTGCCGCCGACTGCGCGGCTACACT 878
Query 169 GACAGAGCCAACGA--GTTCATCACC--TTGGCCGGAA--GGTCTGGGTAATCTTGTTA- 221
|| || |||||| ||| || || ||||||| | | | |||||||||| | |
Sbjct 877 GATGTAGTCAACGAGGGTTTATAGCCGGTTGGCCGACAGCGCCCGGGGTAATCTTTTGAG 818
Query 222 AACTCTGTCGTGCTGGGGA---TAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGC 277
|| | ||||| |||||| ||| | ||||||| ||| || |||| |||| ||
Sbjct 817 AATTTCATCGTGATGGGGAGTGTAGCGAGCTGCAATTGTTGGGCTGTCAAACGGGAA-GC 759
Query 278 CTAGTAAGCG-CGTGTCATCAGCACGCGTT--GATTACGTCC-CTGCCCT-TTGTA 328
|| ||||| || |||||| || |||||| || ||||||| ||||||| |||||
Sbjct 758 CTGTAAAGCGCCGAGTCATC-GCTCGCGTTTGGACTACGTCCGCTGCCCTCTTGTA 704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 945392022528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |