Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq618 307 2e-81 seq3688 282 8e-74 seq137676 113 9e-23 seq9685 80.6 5e-13 >seq618 Length=12052 Score = 307 bits (340), Expect = 2e-81 Identities = 230/265 (87%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC---TCAAGCCGATGGAAGTTTGAGGCAATAACAG 123 ||| ||||||||||||||||| |||| | | |||| ||||||||||||||||||||| Sbjct 1544 GCCAGCTTCTTAGAGGGACTA-CGGCCTTTTAGGCCGC-GGAAGTTTGAGGCAATAACAG 1601 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1602 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAG 1661 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAG 243 || || ||||||||| ||| | |||||||||| | ||| | ||||| ||||||||| Sbjct 1662 TTTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAG 1720 Query 244 AGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGC 303 | |||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||| Sbjct 1721 ATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGC 1780 Query 304 GTTGATTACGTCCCTGCCCTTTGTA 328 ||||| ||||||||||||||||||| Sbjct 1781 GTTGACTACGTCCCTGCCCTTTGTA 1805 >seq3688 Length=5029 Score = 282 bits (312), Expect = 8e-74 Identities = 224/264 (85%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTA--TCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| ||||||||||||||||| || | | | || ||||||||||||||||||||||| Sbjct 4890 GCCAGCTTCTTAGAGGGACTACATCCTTTTAGGTCG-TGGAAGTTTGAGGCAATAACAGG 4832 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 ||| ||||||||||| |||||||||||||||||||||||||||||| | |||||||| Sbjct 4831 TCTATGATGCCCTTA-ATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 4773 Query 185 TCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGA 244 | || ||||||||| ||| | |||||||||| | ||| | ||||| |||||||||| Sbjct 4772 TTATAGCCTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGA 4714 Query 245 GCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCG 304 |||||||||| ||| |||||||| |||||| ||||||| ||||| ||||||||| |||| Sbjct 4713 TCATTGCAATTGTTGGTCTTCAACAAGGAATTCCTAGTATGCGCGAGTCATCAGCTCGCG 4654 Query 305 TTGATTACGTCCCTGCCCTTTGTA 328 |||| ||||||||||||||||||| Sbjct 4653 TTGACTACGTCCCTGCCCTTTGTA 4630 >seq137676 Length=979 Score = 113 bits (124), Expect = 9e-23 Identities = 67/70 (96%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 93 TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 152 || || | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 971 TCTAGGCCATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCC 912 Query 153 GCACGCGCGC 162 |||||||||| Sbjct 911 GCACGCGCGC 902 >seq9685 Length=2322 Score = 80.6 bits (88), Expect = 5e-13 Identities = 209/296 (71%), Gaps = 37/296 (13%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCGGC-TCAAG--CCGATGGAAGTTTGAGG------CAA 117 ||| ||||||||||||||||| |||| | || ||| |||||||||||| | | Sbjct 996 GCCAGCTTCTTAGAGGGACTA-CGGCTTTTAGGCCCGCGGGAAGTTTGAGGCCCCCCCCA 938 Query 118 TAACAGGTC-----TGTGATGCCCTTA-GA-TGTTCTG-GGCCGCACGCGC-GCTACACT 168 ||||||| | |||||| ||||| || ||| || |||| |||| |||||||| Sbjct 937 TAACAGGGCTCTGGTGTGATTGCCTTACGAGTGTCGTGCCGCCGACTGCGCGGCTACACT 878 Query 169 GACAGAGCCAACGA--GTTCATCACC--TTGGCCGGAA--GGTCTGGGTAATCTTGTTA- 221 || || |||||| ||| || || ||||||| | | | |||||||||| | | Sbjct 877 GATGTAGTCAACGAGGGTTTATAGCCGGTTGGCCGACAGCGCCCGGGGTAATCTTTTGAG 818 Query 222 AACTCTGTCGTGCTGGGGA---TAGAGCATTGCAATTATTGCTCT-TCAACGAGGAATGC 277 || | ||||| |||||| ||| | ||||||| ||| || |||| |||| || Sbjct 817 AATTTCATCGTGATGGGGAGTGTAGCGAGCTGCAATTGTTGGGCTGTCAAACGGGAA-GC 759 Query 278 CTAGTAAGCG-CGTGTCATCAGCACGCGTT--GATTACGTCC-CTGCCCT-TTGTA 328 || ||||| || |||||| || |||||| || ||||||| ||||||| ||||| Sbjct 758 CTGTAAAGCGCCGAGTCATC-GCTCGCGTTTGGACTACGTCCGCTGCCCTCTTGTA 704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 945392022528