Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mentha_20longifolia_20[genbank_20GCA_5F001642375.1_202016-05-11] 190,876 sequences; 353,287,234 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq87019 159 3e-34 seq42153 132 4e-26 >seq87019 Length=1933 Score = 159 bits (176), Expect = 3e-34 Identities = 412/626 (66%), Gaps = 4/626 (1%) Strand=Plus/Plus Query 66007 GGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTC 66066 ||| || || ||||| |||||||||||| | || || ||| || | |||| || || Sbjct 1279 GGCCAGGGAAGCGAGATTGCAGACAGCTGTTTCCTCTGGACTTGTGAATTCGATGATCTC 1338 Query 66067 GGTGCACAGATTACTGCAGCGT--ATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 ||||| |||||| | || | || || || | || || ||||||||||| | || Sbjct 1339 TGTGCATAGATTA--GAAGACTTGATAGTTCCAAGGTTTTGCTGATTACTCTTTCTGTTA 1396 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || | ||||||||| | |||||| ||| |||| || |||| |||| || | || || Sbjct 1397 CAGGAATCCTTGTAGAGCATGTAGGGATTGCCTGTTTCAATCTGGGCTTCCAAAATAGCA 1456 Query 66185 TGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCG 66244 ||| || |||| || || || | | || | || || | | Sbjct 1457 AACCACAGCTTCTGTGCTTTAACAACACTCCTAGATTTTCCCTCAGACTCATAGCCTGTG 1516 Query 66245 TAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACAC 66304 || | | || || ||||||||| || | || | || || | || || Sbjct 1517 TACAACTTCTCAAACTTTTCACCCCAACAGTCAGCAAGGCCAGGGGCCTCATTAGGGCAA 1576 Query 66305 ATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGG 66364 | ||| |||||||| |||| || || ||||| ||| || | ||| || ||||| ||| Sbjct 1577 AACAGGGACCAATCCCCATTCTCTTGCACACGCTTCATGAACAAATCTGGGATCCAAAGG 1636 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGG 66424 ||||||| | ||| || |||| | ||| || | || ||||| || | |||||| || Sbjct 1637 CCGTAGAACAAATCTCGAGCTCTGTTCTCTTCCTTTCCATGATTCTTCCTCAAGTCTAGC 1696 Query 66425 AACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTG 66484 | ||||| || || ||||||||||| |||| || || || || | ||| | | |||| Sbjct 1697 CAATCAAATATATCTGCATGCCATGGCTCCAAATAAATAGCAAAAGCACCCTTTCTTTTG 1756 Query 66485 CCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGC 66544 || ||||| || || ||||| ||||| | ||||| || | || |||||| || | Sbjct 1757 CCTCCACCCTGATCTACGTATCGAGCTGTGTCATTGAACACCCTCAGCATCGGAACTATG 1816 Query 66545 CCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACA 66604 || || ||| | ||||| || || ||| | || ||| ||||||| ||||| | Sbjct 1817 CCATTGGATGTACCATTAGTTCCCCTAATGTAGCTGCCCATTGCTCGTATATTGTGAATA 1876 Query 66605 TTCAGACCAATACCACCGGCCGTCTT 66630 || ||||||||||| || || || Sbjct 1877 GACAATCCAATACCACCCGCAGTTTT 1902 >seq42153 Length=9390 Score = 132 bits (146), Expect = 4e-26 Identities = 379/562 (67%), Gaps = 22/562 (4%) Strand=Plus/Minus Query 61098 GTACAAA-AAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG-TC-CAAAGA 61154 ||||| | |||||||| ||| | | |||||||| |||||||||||| ||| || | | || Sbjct 5396 GTACACAGAAGGCGGAGGCTCCTTCCTGGACGGCGGAGGAGGTCGACTTGGTCGCGAGGA 5337 Query 61155 CATGAATGAC-TGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGG 61213 | | || |||||| | | ||| || | |||||| ||| || ||| | | Sbjct 5336 CCAGCGCCACATGGGAGTCCCTCACCCGCGACGAGAAGCATTTCCTTAG-CACGTGCTCG 5278 Query 61214 CGTT-CTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA---CGTTTCGCG 61269 | || ||| ||||| ||| |||| |||||| |||||| || | |||||| | Sbjct 5277 CCTTGCTTCGCCGCCTCG-ACGGCATCGTCCTGGAGAATACATCAGCCGGCCGTTTCATG 5219 Query 61270 CAGGAGGTG-CAAGTGTCGGAGGCG-CGTTGTTTCTACGGCTTCCAGATTGCCATGGAGA 61327 |||||||| || || ||| ||||| || |||||||| |||||||| ||||| |||| Sbjct 5218 -AGGAGGTGGCAGGTCTCG-AGGCGGCGCGCCTTCTACGGGTTCCAGATCGCCATCGAGA 5161 Query 61328 ATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC--AGGGAGCGGGCGGA 61385 | ||||||| ||||||||||| | ||| |||| || |||||| || || ||| | Sbjct 5160 ACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACATCCAAGTGATCGGAGGAG 5101 Query 61386 ACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | || | ||| || ||||| || || || || || |||| ||| || Sbjct 5100 AAGAG-CCGCCTCTTCCGCGCGATCGACACCATCCCTTGCGTCGAGAGGAAGGCGAGCTG 5042 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 ||| | | |||||| | | | ||| || || | || | ||| | || || || Sbjct 5041 GGCGCTGAGCTGGATCGACGG---ATCGGAGACGTTCGCGGAGAGGTTGGTTGCCTTCGC 4985 Query 61506 GGTGGTCGAGGGTGTATTTTTC-AGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAAC 61564 | || || || | || ||| ||| | | || ||| || |||||| ||||||| | Sbjct 4984 GTGCGTTGAAGGGATCTTCTTCTCCGGGAGCTTCTG-CGCCATTTTTTGGCTGAAGAAGC 4926 Query 61565 GTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGC 61624 | || || ||||| || ||||| || ||||| ||||| || | || || ||| ||| Sbjct 4925 GCGGTCTCATGCCTGGGCTGACGTTTTCGAATGAATTGATCTCGAGAGATGAAGGCTTGC 4866 Query 61625 ATTGTGATTTTGCTGTTTTGCT 61646 | || ||||| ||| ||||| Sbjct 4865 ACTGCGATTTCGCTTGCTTGCT 4844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396643137064640