Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq3956 172 1e-40 seq2764 80.6 5e-13 seq24 80.6 5e-13 seq33854 78.8 2e-12 seq91 75.2 2e-11 >seq3956 Length=4762 Score = 172 bits (190), Expect = 1e-40 Identities = 244/337 (72%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||| || |||||| ||| ||||||| | || |||| | Sbjct 2432 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATACCTACAAACAGTGGGAGGCCAA 2491 Query 61 GAGTGATTCGG--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || ||| | |||| |||| ||||||| |||||| | | ||| || | || | | Sbjct 2492 GATCCGTTCTGGCTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTGAT-GTGTCGA 2550 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC- 177 ||||| ||||| | ||| || || || ||||||||| || || |||||| Sbjct 2551 GCGAGCTTAAGCCGAT-AGGTGG---AGGCGCAGCGAAAGCGAGTCTGAAGAGGGCGCTT 2606 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 ||||| | | |||| ||||||| |||||||| ||| ||||||||||||| |||| Sbjct 2607 GAGTTCGACGGATCAGACCCGAAACCCGGTGATCTAGCCATGAGCAGGTTGAAGGTGCGG 2666 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| || ||||||||||||| ||| |||||||| || ||||||| | || | Sbjct 2667 TAACACGCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGCCTCCGATGACTTGTGGTT 2726 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||||||| ||||||||||| || Sbjct 2727 AGGGGTGAAAGGCCAATCAAACCGGGAAATAGCTGGT 2763 >seq2764 Length=4463 Score = 80.6 bits (88), Expect = 5e-13 Identities = 208/310 (67%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| ||| | | Sbjct 2816 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCCTGGGC 2873 Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 | ||| |||||||| ||| | |||||||| ||| | | | | || || ||||||| Sbjct 2874 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 2932 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 || | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 2933 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 2988 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| | |||||||| | | || |||| ||||| ||| | | || Sbjct 2989 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 3048 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 |||| |||||||| | |||||||| | ||||||| | | || ||||||||||| | Sbjct 3049 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 3108 Query 310 CCAATCAAAC 319 ||| || ||| Sbjct 3109 CCACTCGAAC 3118 >seq24 Length=10012559 Score = 80.6 bits (88), Expect = 5e-13 Identities = 209/312 (67%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| || | | | || Sbjct 3991868 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 3991810 Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127 | || |||||||| ||| | |||||||| ||| | | | | || || ||||| Sbjct 3991809 ACTCTAACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 3991751 Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187 |||| | ||| ||||| || ||||||||| ||| | ||||| | || || Sbjct 3991750 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 3991695 Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247 | ||| |||| | |||||||| ||| || |||| ||||| ||| | | Sbjct 3991694 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 3991635 Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307 |||||| |||||||| | |||||| | | ||||||| | | || ||||||||||| Sbjct 3991634 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 3991575 Query 308 GGCCAATCAAAC 319 |||| || ||| Sbjct 3991574 TGCCACTCGAAC 3991563 >seq33854 Length=1984 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 1155 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 1096 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 1095 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 1036 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 1035 AACCAAGATCGGATATAGCTGGT 1013 >seq91 Length=4251426 Score = 75.2 bits (82), Expect = 2e-11 Identities = 103/143 (72%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| | ||||| ||||||| ||| ||||||||||||| || |||| | |||| Sbjct 446595 GACCCAAAACCGACTGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAAGCCTTGGA 446536 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||| || || | ||| | |||||||| | || ||||||||||||||| Sbjct 446535 GGACCGAATTCACGAATGTGGCAAAATACATGGATGACTTGTGGCTAGGGGTGAAAGGCC 446476 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 446475 AACCAATATTGGATATAGCTGGT 446453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972446134272