Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 172 1e-40
seq2764 80.6 5e-13
seq24 80.6 5e-13
seq33854 78.8 2e-12
seq91 75.2 2e-11
>seq3956
Length=4762
Score = 172 bits (190), Expect = 1e-40
Identities = 244/337 (72%), Gaps = 11/337 (3%)
Strand=Plus/Plus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60
||||| ||||| |||||| || |||||| ||| ||||||| | || |||| |
Sbjct 2432 CCCGACGAGGGGAGTGAAACAGTTCCTGAAACCGGATACCTACAAACAGTGGGAGGCCAA 2491
Query 61 GAGTGATTCGG--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118
|| ||| | |||| |||| ||||||| |||||| | | ||| || | || | |
Sbjct 2492 GATCCGTTCTGGCTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTGAT-GTGTCGA 2550
Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC- 177
||||| ||||| | ||| || || || ||||||||| || || ||||||
Sbjct 2551 GCGAGCTTAAGCCGAT-AGGTGG---AGGCGCAGCGAAAGCGAGTCTGAAGAGGGCGCTT 2606
Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237
||||| | | |||| ||||||| |||||||| ||| ||||||||||||| ||||
Sbjct 2607 GAGTTCGACGGATCAGACCCGAAACCCGGTGATCTAGCCATGAGCAGGTTGAAGGTGCGG 2666
Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297
|||| || ||||||||||||| ||| |||||||| || ||||||| | || |
Sbjct 2667 TAACACGCACTGGAGGACCGAACGGGTGTCTGTTGAAAAAGCCTCCGATGACTTGTGGTT 2726
Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334
|||||||||||||||||||||| ||||||||||| ||
Sbjct 2727 AGGGGTGAAAGGCCAATCAAACCGGGAAATAGCTGGT 2763
>seq2764
Length=4463
Score = 80.6 bits (88), Expect = 5e-13
Identities = 208/310 (67%), Gaps = 9/310 (3%)
Strand=Plus/Plus
Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| ||| | |
Sbjct 2816 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAG--GAGCCCTGGGC 2873
Query 72 T--GACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
| ||| |||||||| ||| | |||||||| ||| | | | | || || |||||||
Sbjct 2874 TCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAG 2932
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
|| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 2933 GGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTT 2988
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249
| ||| |||| | |||||||| | | || |||| ||||| ||| | | ||
Sbjct 2989 ATGGACCCGAACCTGGGTGATCTATCTATGACCAGGATGAAGCTTGGGTGAAACTAAGTG 3048
Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309
|||| |||||||| | |||||||| | ||||||| | | || ||||||||||| |
Sbjct 3049 GAGGTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG 3108
Query 310 CCAATCAAAC 319
||| || |||
Sbjct 3109 CCACTCGAAC 3118
>seq24
Length=10012559
Score = 80.6 bits (88), Expect = 5e-13
Identities = 209/312 (67%), Gaps = 10/312 (3%)
Strand=Plus/Minus
Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| || | | | ||
Sbjct 3991868 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGACT-ACTAGG 3991810
Query 72 ----TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTA 127
| || |||||||| ||| | |||||||| ||| | | | | || || |||||
Sbjct 3991809 ACTCTAACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTA 3991751
Query 128 AGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187
|||| | ||| ||||| || ||||||||| ||| | ||||| | || ||
Sbjct 3991750 AGGGAACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGC 3991695
Query 188 CGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA 247
| ||| |||| | |||||||| ||| || |||| ||||| ||| | |
Sbjct 3991694 TTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAG 3991635
Query 248 TGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAA 307
|||||| |||||||| | |||||| | | ||||||| | | || |||||||||||
Sbjct 3991634 TGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAA 3991575
Query 308 GGCCAATCAAAC 319
|||| || |||
Sbjct 3991574 TGCCACTCGAAC 3991563
>seq33854
Length=1984
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 1155 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 1096
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 1095 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 1036
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 1035 AACCAAGATCGGATATAGCTGGT 1013
>seq91
Length=4251426
Score = 75.2 bits (82), Expect = 2e-11
Identities = 103/143 (72%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| | ||||| ||||||| ||| ||||||||||||| || |||| | ||||
Sbjct 446595 GACCCAAAACCGACTGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAAGCCTTGGA 446536
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||| || || | ||| | |||||||| | || |||||||||||||||
Sbjct 446535 GGACCGAATTCACGAATGTGGCAAAATACATGGATGACTTGTGGCTAGGGGTGAAAGGCC 446476
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 446475 AACCAATATTGGATATAGCTGGT 446453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972446134272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |