Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq2566 170 1e-40 seq5649 167 1e-39 seq6951 161 6e-38 seq10045 156 2e-36 seq10646 152 3e-35 seq2225 143 1e-32 seq1692 136 2e-30 seq16444 134 8e-30 seq8310 134 8e-30 seq195 134 8e-30 seq3644 131 9e-29 seq1165 120 2e-25 seq276 116 2e-24 seq9242 96.9 2e-18 seq74 95.1 7e-18 seq8824 82.4 4e-14 seq26917 75.2 6e-12 >seq2566 Length=12546 Score = 170 bits (188), Expect = 1e-40 Identities = 106/114 (93%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63 |||||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||| Sbjct 12546 CCCAAAAACTTTGATTTCTCGTAAGGTGCCGAAGGAGTCAAAATAATAACATCCTCCGAT 12487 Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 12486 CCCTAGTCGGCATAGTTTATGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 12433 >seq5649 Length=13326 Score = 167 bits (184), Expect = 1e-39 Identities = 108/117 (92%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||||||||||||||| |||||||| | ||||||| || Sbjct 10157 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGATGGAGTCAAATAG-TAACATCCACC 10099 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 10098 GATCCCTAGTCGGCATAGTTTACGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 10042 >seq6951 Length=503 Score = 161 bits (178), Expect = 6e-38 Identities = 104/114 (91%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63 |||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||| Sbjct 503 CCCAAAAACTTTGATTTCTCGTAAGGTGCCGAAGGAGTCAAATAAGTAACATCCTCCGAT 444 Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 443 CCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 390 >seq10045 Length=104 Score = 156 bits (172), Expect = 2e-36 Identities = 95/101 (94%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 17 ATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCAT 76 ||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||| Sbjct 104 ATTTCTCGTAAGGTGCCGATGGAGTCAAAATAATAACATCCACCGATCCCTAGTCGGCAT 45 Query 77 AGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||| ||||||||||||||||||||||||||||| Sbjct 44 AGTTTACGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 4 >seq10646 Length=592 Score = 152 bits (168), Expect = 3e-35 Identities = 104/117 (89%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 || |||||| ||||||||||||||||||||||||| || | || || | | || || || Sbjct 450 GAGCCCAAACACTTTGATTTCTCGTAAGGTGCCGAACGGGGCATAAAAAAACCACCGTCC 391 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 390 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 334 >seq2225 Length=7605 Score = 143 bits (158), Expect = 1e-32 Identities = 105/118 (89%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCC 59 ||||||||| |||||||||||||||||||||||| | ||| ||| || | |||| | | Sbjct 791 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCG-GAGAGGTCATAAA-ACAACACCCTC 734 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 733 CGATCCCTAGTCGGCATCGTTTACGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 676 >seq1692 Length=113 Score = 136 bits (150), Expect = 2e-30 Identities = 92/103 (89%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| |||||||||||||||||||||| || ||||||||| ||||||| || Sbjct 103 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCTGATAAAGTCAAAATAATAACATTTACC 44 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 43 AATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTAT 1 >seq16444 Length=1006 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 316 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 257 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 256 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 200 >seq8310 Length=407 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 147 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 206 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 207 GATCCCTAGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 263 >seq195 Length=1358929 Score = 134 bits (148), Expect = 8e-30 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 1336072 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1336013 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1336012 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1335956 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| | Sbjct 1285801 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCTGTC 1285742 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 1285741 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1285685 >seq3644 Length=213 Score = 131 bits (144), Expect = 9e-29 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 155 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 96 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||||||||||| ||||| |||| |||||| ||||||||||||||||| |||| Sbjct 95 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCATCGA 39 >seq1165 Length=8953 Score = 120 bits (132), Expect = 2e-25 Identities = 99/118 (84%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| | Sbjct 652 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 594 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 593 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 536 >seq276 Length=2778623 Score = 116 bits (128), Expect = 2e-24 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||| | ||||| || || ||| || Sbjct 2728663 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAATATCTGCC 2728722 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||| ||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 2728723 AATCCCTAGTTGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2728779 >seq9242 Length=5984466 Score = 96.9 bits (106), Expect = 2e-18 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||||| |||||||||| ||||| || |||||| || Sbjct 2787453 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 2787394 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGAC 98 ||||||||||||||| ||||| |||| |||||| ||| Sbjct 2787393 AATCCCTAGTCGGCATTGTTTATGGTTGAGACTAGGAC 2787356 >seq74 Length=10145792 Score = 95.1 bits (104), Expect = 7e-18 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| | ||||||||||| || ||||||| || || || |||||| || Sbjct 385285 GAACCCAAAAAATTTGATTTCTCATAGGGTGCCGGCGGAATCCTAAAAGCAACATCTGCC 385344 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGA 107 |||||||||||| ||| ||||| ||||| ||||| ||| |||||||| Sbjct 385345 GATCCCTAGTCGACATCGTTTATGGTTAGGACTAGGACAGTATCTGA 385391 >seq8824 Length=186 Score = 82.4 bits (90), Expect = 4e-14 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||||| ||||| |||| |||||| ||||| |||||||||||||||| Sbjct 1 CGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGGATCTGATCGTCTTCGA 58 >seq26917 Length=5014 Score = 75.2 bits (82), Expect = 6e-12 Identities = 52/59 (88%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||| |||| ||||| |||| |||||| |||||||| |||||||||| || Sbjct 3087 CCGATCCCTAGTCAGCATCGTTTATGGTTGAGACTAGGACGGTATTTGATCGTCTTTGA 3029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278305058640