Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000190.1
Length=117
Score E
Sequences producing significant alignments: (Bits) Value
seq2566 170 1e-40
seq5649 167 1e-39
seq6951 161 6e-38
seq10045 156 2e-36
seq10646 152 3e-35
seq2225 143 1e-32
seq1692 136 2e-30
seq16444 134 8e-30
seq8310 134 8e-30
seq195 134 8e-30
seq3644 131 9e-29
seq1165 120 2e-25
seq276 116 2e-24
seq9242 96.9 2e-18
seq74 95.1 7e-18
seq8824 82.4 4e-14
seq26917 75.2 6e-12
>seq2566
Length=12546
Score = 170 bits (188), Expect = 1e-40
Identities = 106/114 (93%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63
|||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 12546 CCCAAAAACTTTGATTTCTCGTAAGGTGCCGAAGGAGTCAAAATAATAACATCCTCCGAT 12487
Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 12486 CCCTAGTCGGCATAGTTTATGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 12433
>seq5649
Length=13326
Score = 167 bits (184), Expect = 1e-39
Identities = 108/117 (92%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||||||||||||||| |||||||| | ||||||| ||
Sbjct 10157 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCGATGGAGTCAAATAG-TAACATCCACC 10099
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 10098 GATCCCTAGTCGGCATAGTTTACGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 10042
>seq6951
Length=503
Score = 161 bits (178), Expect = 6e-38
Identities = 104/114 (91%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 4 CCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGAT 63
|||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 503 CCCAAAAACTTTGATTTCTCGTAAGGTGCCGAAGGAGTCAAATAAGTAACATCCTCCGAT 444
Query 64 CCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 443 CCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 390
>seq10045
Length=104
Score = 156 bits (172), Expect = 2e-36
Identities = 95/101 (94%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 17 ATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCAT 76
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||
Sbjct 104 ATTTCTCGTAAGGTGCCGATGGAGTCAAAATAATAACATCCACCGATCCCTAGTCGGCAT 45
Query 77 AGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||| |||||||||||||||||||||||||||||
Sbjct 44 AGTTTACGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 4
>seq10646
Length=592
Score = 152 bits (168), Expect = 3e-35
Identities = 104/117 (89%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
|| |||||| ||||||||||||||||||||||||| || | || || | | || || ||
Sbjct 450 GAGCCCAAACACTTTGATTTCTCGTAAGGTGCCGAACGGGGCATAAAAAAACCACCGTCC 391
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 390 GATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 334
>seq2225
Length=7605
Score = 143 bits (158), Expect = 1e-32
Identities = 105/118 (89%), Gaps = 3/118 (3%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAG-TCAAAATGATAACATCGCC 59
||||||||| |||||||||||||||||||||||| | ||| ||| || | |||| | |
Sbjct 791 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCCG-GAGAGGTCATAAA-ACAACACCCTC 734
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 733 CGATCCCTAGTCGGCATCGTTTACGGTTGAGACTACGACGGTATCTGATCGTCTTCGA 676
>seq1692
Length=113
Score = 136 bits (150), Expect = 2e-30
Identities = 92/103 (89%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| |||||||||||||||||||||| || ||||||||| ||||||| ||
Sbjct 103 GAACCCAAAAACTTTGATTTCTCGTAAGGTGCTGATAAAGTCAAAATAATAACATTTACC 44
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103
||||||||||||||||||||| ||||||||||||||||||||
Sbjct 43 AATCCCTAGTCGGCATAGTTTATGGTTAAGACTACGACGGTAT 1
>seq16444
Length=1006
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 316 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 257
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 256 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 200
>seq8310
Length=407
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 147 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 206
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 207 GATCCCTAGTCGGCATTGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 263
>seq195
Length=1358929
Score = 134 bits (148), Expect = 8e-30
Identities = 100/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 1336072 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 1336013
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1336012 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1335956
Score = 131 bits (144), Expect = 9e-29
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| |
Sbjct 1285801 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCTGTC 1285742
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 1285741 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 1285685
>seq3644
Length=213
Score = 131 bits (144), Expect = 9e-29
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 155 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 96
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
|||||||||||||||| ||||| |||| |||||| ||||||||||||||||| ||||
Sbjct 95 GATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCATCGA 39
>seq1165
Length=8953
Score = 120 bits (132), Expect = 2e-25
Identities = 99/118 (84%), Gaps = 2/118 (2%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCG-AGTCAAAATGATAACATCGCC 59
||||||||| ||||||||||||| ||||||||| |||| |||| | |||||| |
Sbjct 652 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTATAAGCAACATCCGC 594
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||| |||||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 593 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 536
>seq276
Length=2778623
Score = 116 bits (128), Expect = 2e-24
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||| | ||||| || || ||| ||
Sbjct 2728663 GAACCCAAAAACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTAAAAGCAATATCTGCC 2728722
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||| ||||| ||||| |||| |||||| ||||||||||||||||||||||
Sbjct 2728723 AATCCCTAGTTGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 2728779
>seq9242
Length=5984466
Score = 96.9 bits (106), Expect = 2e-18
Identities = 80/98 (82%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| ||||||||||||| |||||||||| ||||| || |||||| ||
Sbjct 2787453 GAACCCAAAAACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTAAAAGCAACATCCGCC 2787394
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGAC 98
||||||||||||||| ||||| |||| |||||| |||
Sbjct 2787393 AATCCCTAGTCGGCATTGTTTATGGTTGAGACTAGGAC 2787356
>seq74
Length=10145792
Score = 95.1 bits (104), Expect = 7e-18
Identities = 85/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60
||||||||| | ||||||||||| || ||||||| || || || |||||| ||
Sbjct 385285 GAACCCAAAAAATTTGATTTCTCATAGGGTGCCGGCGGAATCCTAAAAGCAACATCTGCC 385344
Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGA 107
|||||||||||| ||| ||||| ||||| ||||| ||| ||||||||
Sbjct 385345 GATCCCTAGTCGACATCGTTTATGGTTAGGACTAGGACAGTATCTGA 385391
>seq8824
Length=186
Score = 82.4 bits (90), Expect = 4e-14
Identities = 53/58 (91%), Gaps = 0/58 (0%)
Strand=Plus/Plus
Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||||||| ||||| |||| |||||| ||||| ||||||||||||||||
Sbjct 1 CGATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGGGATCTGATCGTCTTCGA 58
>seq26917
Length=5014
Score = 75.2 bits (82), Expect = 6e-12
Identities = 52/59 (88%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117
||||||||||||| |||| ||||| |||| |||||| |||||||| |||||||||| ||
Sbjct 3087 CCGATCCCTAGTCAGCATCGTTTATGGTTGAGACTAGGACGGTATTTGATCGTCTTTGA 3029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 278305058640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |