Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000370.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 80.6 3e-13
seq77 80.6 3e-13
>seq3956
Length=4762
Score = 80.6 bits (88), Expect = 3e-13
Identities = 82/107 (77%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67
||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| |||
Sbjct 1906 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCGGGGG 1965
Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114
|| || | | | ||||||| ||| ||||||||||| |||||
Sbjct 1966 GAGCCGCGAACAGGCTTTGATCCCCGGATCTCCGAATGGGGAAACCC 2012
>seq77
Length=8408033
Score = 80.6 bits (88), Expect = 3e-13
Identities = 128/179 (72%), Gaps = 10/179 (6%)
Strand=Plus/Plus
Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65
||||||||| ||||||| | | ||| ||| ||||| | | ||||| ||||| ||| ||
Sbjct 2151706 ACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCATAGTAAGCGACGAAATGCTTCG 2151765
Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC---CGATATATT 122
|||| | | | ||| | | |||||| |||| |||||| || ||||| ||| | ||
Sbjct 2151766 GGGAGTTGAAAATAAGCGTAGATCCGAAGATTCCCGAATAGGTCAACCTTTCGAACTGTT 2151825
Query 123 GGAGATATATC-ATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180
| || ||| || | ||||| || | ||| ||| |||||||||||||| ||||
Sbjct 2151826 GC---TAAATCCATGAG--TAGGCAAGAGAC-AACCTGGCGAACTGAAACATCTTAGTA 2151878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476631979256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |