Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3956 80.6 3e-13 seq77 80.6 3e-13 >seq3956 Length=4762 Score = 80.6 bits (88), Expect = 3e-13 Identities = 82/107 (77%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| |||||||||| || ||||||| |||| ||| Sbjct 1906 GGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCGGGGG 1965 Query 68 GATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 || || | | | ||||||| ||| ||||||||||| ||||| Sbjct 1966 GAGCCGCGAACAGGCTTTGATCCCCGGATCTCCGAATGGGGAAACCC 2012 >seq77 Length=8408033 Score = 80.6 bits (88), Expect = 3e-13 Identities = 128/179 (72%), Gaps = 10/179 (6%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 ||||||||| ||||||| | | ||| ||| ||||| | | ||||| ||||| ||| || Sbjct 2151706 ACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCATAGTAAGCGACGAAATGCTTCG 2151765 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACC---CGATATATT 122 |||| | | | ||| | | |||||| |||| |||||| || ||||| ||| | || Sbjct 2151766 GGGAGTTGAAAATAAGCGTAGATCCGAAGATTCCCGAATAGGTCAACCTTTCGAACTGTT 2151825 Query 123 GGAGATATATC-ATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGTA 180 | || ||| || | ||||| || | ||| ||| |||||||||||||| |||| Sbjct 2151826 GC---TAAATCCATGAG--TAGGCAAGAGAC-AACCTGGCGAACTGAAACATCTTAGTA 2151878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476631979256