Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 324 4e-86
seq35238 192 2e-46
seq74 190 5e-46
seq652 159 9e-37
seq569 156 1e-35
seq23 82.4 2e-13
seq86 78.8 2e-12
seq17 75.2 3e-11
>seq3956
Length=4762
Score = 324 bits (358), Expect = 4e-86
Identities = 314/401 (78%), Gaps = 2/401 (0%)
Strand=Plus/Plus
Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69
|||| |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||
Sbjct 245 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 304
Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129
||||||| ||||||||||||| ||||| |||||| | |||| |||| |||||||||
Sbjct 305 GTTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGCATTTAAGTCAGGGGTGAAATCC 364
Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189
| |||| ||||| |||| ||| ||| |||| | | || |||| | ||||| | ||
Sbjct 365 CGAGGCTCAACCTCGGAACTGCCCTTGATACTGGATGTCTTGAGTCCGGAAGAGGTGAGT 424
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||| | | |||||| ||||||| ||||||||| | | ||||||| ||||||||||
Sbjct 425 GGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCGGTGGCGAAGGC 484
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
|| | |||| ||||||||| | |||||| |||||||||||||||||||||||||
Sbjct 485 GGCTCACTGGTCCGGAACTGACGCTGAGGCACGACAGCGTGGGGAGCAAACAGGATTAGA 544
Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTTACTTCCTTG 368
||||||||||||||||||| |||||||| | || |||||| |||||| | ||
Sbjct 545 TACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTGGGTGATTTA-TCACTGA 603
Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || ||||||||| | || ||||||||||| |||
Sbjct 604 GTGGCGCAGCTAACGCTTTGAGCATTCCGCCTGGGGAGTAC 644
>seq35238
Length=927
Score = 192 bits (212), Expect = 2e-46
Identities = 246/334 (74%), Gaps = 10/334 (3%)
Strand=Plus/Plus
Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67
|| ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| |
Sbjct 222 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 281
Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126
|| ||||||| ||||||||||||| | || ||||||| | | ||| |||||
Sbjct 282 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 335
Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183
| | | | | || ||| | | ||| | | || ||| ||||| | |||||
Sbjct 336 TTCAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 395
Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243
| | |||||||| | |||||| ||||||| || |||| | | ||||| |||| ||
Sbjct 396 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGCCAAAAGC 455
Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303
||||||||| | ||||| || |||||| || ||||||| |||||||| ||| ||
Sbjct 456 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGTGTGCGAAAGCATGGGGAGCGAACGGG 515
Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
||||||||||||||||||||| ||| ||||||||
Sbjct 516 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 549
>seq74
Length=10145792
Score = 190 bits (210), Expect = 5e-46
Identities = 288/409 (70%), Gaps = 2/409 (0%)
Strand=Plus/Minus
Query 2 ATACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG 61
||| ||| ||||||||| ||||||||| ||||| ||| |||||||||| ||| ||
Sbjct 514375 ATATCTGGGGAATAAGCATCGGCTAACTCTATGCCAATAGCTGCGGTAATACAGAGGATG 514316
Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTG 121
||||||||| |||||| | ||||| |||||||| | ||| | | | |||| | | |
Sbjct 514315 CAAGCGTTATCCGGAATGATTGGGCATAAAGCGTATGTAGGTAGCTTTTTAAGTCCGCCG 514256
Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181
| ||||||| ||||| |||| || || | | ||| | || |||| | ||
Sbjct 514255 TCAAATCCCAGGGCTCAACCGTAGATAGGCGATGGAAACTACCAAGCTGGAGTACGGTAG 514196
Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241
|| | |||||| | ||| || |||||||||||||| || | | ||||||||| |
Sbjct 514195 GGGCAGAGGGAATTTCCGGTGGAGTGGTGAAATGCGTAGAGATCGGAAAGAACACCAACG 514136
Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301
||||| ||| | ||||| | |||||||| || | ||||||| ||||||| ||
Sbjct 514135 GCGAAAGCACTCTGCTGGGCTGACACTGACACTAAGAGGCGAAAGCTAGGGGAGCGAATG 514076
Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361
||||||||||||| |||||| ||| |||||||| ||||| | || | | |
Sbjct 514075 GGATTAGATACCCCAGTAGTCTTAGCCATAAACGATGGATACTAGGCGCTGTGCGTATCG 514016
Query 362 TTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408
|| || || ||||||||||||| |||| ||||||||||| ||
Sbjct 514015 ACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 513967
>seq652
Length=2384379
Score = 159 bits (176), Expect = 9e-37
Identities = 276/400 (69%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71
|||||||| ||||||| | |||| | || ||||||||||| ||| |||||||||||
Sbjct 207610 AATAAGCATCGGCTAATTCTGTGCTAACACCCGCGGTAATATAGAGGATGCAAGCGTTAT 207669
Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131
| |||| | |||||||||||||| | | || | | |||| | | || |||||||
Sbjct 207670 CCCGAATGATTGGGCGTAAAGCGTATGTGGATGGCTTTTTAAGTCTGCCGTCAAATCCCA 207729
Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191
|||| |||| ||| | | | | ||| | | |||| | || || | ||
Sbjct 207730 AGGCTCAACCCTGGACAGGTAGTGGAAACTACCAAGTTGGAGTATAGTAGGGGCAGAGGG 207789
Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251
|||| | ||| ||| |||||||| ||||| || | | ||||||||| |||||| |||
Sbjct 207790 AATTTCCGGTGGAGCGGTGAAATGTGTAGAGATCAGAAAGAACACCAACGGCGAAAGCAC 207849
Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311
| || || | |||||||| | | ||||||| || ||||||| ||||||||||
Sbjct 207850 TCTGCTAGGCTGACACTGACATTGAGAGGCGAAAGCTAGGCGAGCAAATTGGATTAGATA 207909
Query 312 CCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG--GGGATTTACTTCCTTGG 369
||| ||| ||| ||| |||||||| ||||| || || | || || | | |
Sbjct 207910 CCCCAGTAATCCTAGCCGTAAACGATGGATACTAGGTGCTGTATGTATCGACCTGTGTAG 207969
Query 370 TAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| ||||||||||||| |||| | || |||||| |||
Sbjct 207970 TTCTGTAGCTAACGCGTTAAGTATCCTGCTTGGGGAGTAC 208009
>seq569
Length=4400913
Score = 156 bits (172), Expect = 1e-35
Identities = 229/320 (72%), Gaps = 3/320 (1%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||| | ||||||||| ||||||||| |||||||||||| ||| | |
Sbjct 254631 TATCTGGGGAATAAGTATCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATAC 254690
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| || ||| | |||| ||||| ||| | ||| | | | |||| | |||
Sbjct 254691 AAGCGTTATTCTAAATGATTGGGTGTAAAACGTATGTAGGTAGCTTT-TAAGCTTGCTGT 254749
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTG-CACGACTAGAGTGTGTCAG 181
||||||| ||||| |||| ||| || | | ||| || | ||||||| | ||
Sbjct 254750 CAAATCCCTGGGCTCAACCCCGGATAGGCGGTGGAAACTATCAAG-CTAGAGTACGGTAG 254808
Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241
|| |||||| | ||| |||||||||||||||||| | | | ||||||||| |
Sbjct 254809 GGGCAAAGGGAATTTCCGGTGGAGCAGTGAAATGCGTAGAGACCAGAAAGAACACCAACG 254868
Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301
||||| ||| | |||| |||||||| || | |||||| ||||||| ||
Sbjct 254869 GCGAAAGCACTCTGTTGGGCCGACACTGACACTGAGAGGTGAAAGCTAGGGGAGCGAATG 254928
Query 302 GGATTAGATACCCTGGTAGT 321
|||||||||||||| |||||
Sbjct 254929 GGATTAGATACCCTAGTAGT 254948
>seq23
Length=5704166
Score = 82.4 bits (90), Expect = 2e-13
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||| | ||| ||| || ||||||||||| || | | ||| ||||| || ||| ||
Sbjct 2949721 GGAATTTCTGGTGGAGCGGTAAAATGCGTAGAGATCGGAAAGAATACCAACGGTGAAAGC 2949662
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
| | || || ||||| || || | ||||||| |||||| || ||||||||
Sbjct 2949661 ACTCTGCTAGGCCGACACTAACACTGAGAGGCGAAAGCTAGGGGAGTGAATGGGATTAGA 2949602
Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337
||||| ||||||| ||| ||||||||
Sbjct 2949601 TACCCCAGTAGTCCTAGCCGTAAACGAT 2949574
>seq86
Length=7715951
Score = 78.8 bits (86), Expect = 2e-12
Identities = 73/93 (78%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||| || |||| ||||||| ||| |||
Sbjct 6354647 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAACAACCGCAGTAATACAGAGGATGC 6354588
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95
|||||||| | ||| | ||| | ||||||||
Sbjct 6354587 AAGCGTTATCTGAAATGATTGGACATAAAGCGT 6354555
>seq17
Length=1205220
Score = 75.2 bits (82), Expect = 3e-11
Identities = 94/129 (73%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 13 ATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAAT 72
|| |||| ||||||||| |||||| |||| | |||||||| ||| | | | ||||
Sbjct 1123183 ATCAGCATCGGCTAACTCTGTGCCAACAGCTGTGGTAATACAGAGGATACGAATGTTACC 1123124
Query 73 CGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCG 132
|| ||| | | |||||||||||| ||||| | | | |||| | | || ||||| |
Sbjct 1123123 CGAAATGATTAGGCGTAAAGCGTTTGCAGGTGACTTTTTAAGTCTGCCGTCAAATCTCGA 1123064
Query 133 GGCTTAACC 141
|||||||||
Sbjct 1123063 GGCTTAACC 1123055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289130895104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |