Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq3956 324 4e-86 seq35238 192 2e-46 seq74 190 5e-46 seq652 159 9e-37 seq569 156 1e-35 seq23 82.4 2e-13 seq86 78.8 2e-12 seq17 75.2 3e-11 >seq3956 Length=4762 Score = 324 bits (358), Expect = 4e-86 Identities = 314/401 (78%), Gaps = 2/401 (0%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| |||| |||||||||| |||||||||||||||||||||||| |||| || |||||| Sbjct 245 AGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTT 304 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||| ||||||||||||| ||||| |||||| | |||| |||| ||||||||| Sbjct 305 GTTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGCATTTAAGTCAGGGGTGAAATCC 364 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | |||| ||||| |||| ||| ||| |||| | | || |||| | ||||| | || Sbjct 365 CGAGGCTCAACCTCGGAACTGCCCTTGATACTGGATGTCTTGAGTCCGGAAGAGGTGAGT 424 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||| | | |||||| ||||||| ||||||||| | | ||||||| |||||||||| Sbjct 425 GGAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCGGTGGCGAAGGC 484 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 || | |||| ||||||||| | |||||| ||||||||||||||||||||||||| Sbjct 485 GGCTCACTGGTCCGGAACTGACGCTGAGGCACGACAGCGTGGGGAGCAAACAGGATTAGA 544 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG-GATTTACTTCCTTG 368 ||||||||||||||||||| |||||||| | || |||||| |||||| | || Sbjct 545 TACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGTTGGGTGATTTA-TCACTGA 603 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || ||||||||| | || ||||||||||| ||| Sbjct 604 GTGGCGCAGCTAACGCTTTGAGCATTCCGCCTGGGGAGTAC 644 >seq35238 Length=927 Score = 192 bits (212), Expect = 2e-46 Identities = 246/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 222 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 281 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126 || ||||||| ||||||||||||| | || ||||||| | | ||| ||||| Sbjct 282 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 335 Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 | | | | | || ||| | | ||| | | || ||| ||||| | ||||| Sbjct 336 TTCAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 395 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | ||||| |||| || Sbjct 396 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGCCAAAAGC 455 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| || ||||||| |||||||| ||| || Sbjct 456 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGTGTGCGAAAGCATGGGGAGCGAACGGG 515 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 516 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 549 >seq74 Length=10145792 Score = 190 bits (210), Expect = 5e-46 Identities = 288/409 (70%), Gaps = 2/409 (0%) Strand=Plus/Minus Query 2 ATACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTG 61 ||| ||| ||||||||| ||||||||| ||||| ||| |||||||||| ||| || Sbjct 514375 ATATCTGGGGAATAAGCATCGGCTAACTCTATGCCAATAGCTGCGGTAATACAGAGGATG 514316 Query 62 CAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTG 121 ||||||||| |||||| | ||||| |||||||| | ||| | | | |||| | | | Sbjct 514315 CAAGCGTTATCCGGAATGATTGGGCATAAAGCGTATGTAGGTAGCTTTTTAAGTCCGCCG 514256 Query 122 TGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAG 181 | ||||||| ||||| |||| || || | | ||| | || |||| | || Sbjct 514255 TCAAATCCCAGGGCTCAACCGTAGATAGGCGATGGAAACTACCAAGCTGGAGTACGGTAG 514196 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || | |||||| | ||| || |||||||||||||| || | | ||||||||| | Sbjct 514195 GGGCAGAGGGAATTTCCGGTGGAGTGGTGAAATGCGTAGAGATCGGAAAGAACACCAACG 514136 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||| ||| | ||||| | |||||||| || | ||||||| ||||||| || Sbjct 514135 GCGAAAGCACTCTGCTGGGCTGACACTGACACTAAGAGGCGAAAGCTAGGGGAGCGAATG 514076 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTAC 361 ||||||||||||| |||||| ||| |||||||| ||||| | || | | | Sbjct 514075 GGATTAGATACCCCAGTAGTCTTAGCCATAAACGATGGATACTAGGCGCTGTGCGTATCG 514016 Query 362 TTCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 || || || ||||||||||||| |||| ||||||||||| || Sbjct 514015 ACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 513967 >seq652 Length=2384379 Score = 159 bits (176), Expect = 9e-37 Identities = 276/400 (69%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 |||||||| ||||||| | |||| | || ||||||||||| ||| ||||||||||| Sbjct 207610 AATAAGCATCGGCTAATTCTGTGCTAACACCCGCGGTAATATAGAGGATGCAAGCGTTAT 207669 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 | |||| | |||||||||||||| | | || | | |||| | | || ||||||| Sbjct 207670 CCCGAATGATTGGGCGTAAAGCGTATGTGGATGGCTTTTTAAGTCTGCCGTCAAATCCCA 207729 Query 132 GGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGG 191 |||| |||| ||| | | | | ||| | | |||| | || || | || Sbjct 207730 AGGCTCAACCCTGGACAGGTAGTGGAAACTACCAAGTTGGAGTATAGTAGGGGCAGAGGG 207789 Query 192 AATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAG 251 |||| | ||| ||| |||||||| ||||| || | | ||||||||| |||||| ||| Sbjct 207790 AATTTCCGGTGGAGCGGTGAAATGTGTAGAGATCAGAAAGAACACCAACGGCGAAAGCAC 207849 Query 252 CCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATA 311 | || || | |||||||| | | ||||||| || ||||||| |||||||||| Sbjct 207850 TCTGCTAGGCTGACACTGACATTGAGAGGCGAAAGCTAGGCGAGCAAATTGGATTAGATA 207909 Query 312 CCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG--GGGATTTACTTCCTTGG 369 ||| ||| ||| ||| |||||||| ||||| || || | || || | | | Sbjct 207910 CCCCAGTAATCCTAGCCGTAAACGATGGATACTAGGTGCTGTATGTATCGACCTGTGTAG 207969 Query 370 TAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | ||||||||||||| |||| | || |||||| ||| Sbjct 207970 TTCTGTAGCTAACGCGTTAAGTATCCTGCTTGGGGAGTAC 208009 >seq569 Length=4400913 Score = 156 bits (172), Expect = 1e-35 Identities = 229/320 (72%), Gaps = 3/320 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||| | ||||||||| ||||||||| |||||||||||| ||| | | Sbjct 254631 TATCTGGGGAATAAGTATCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATAC 254690 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| || ||| | |||| ||||| ||| | ||| | | | |||| | ||| Sbjct 254691 AAGCGTTATTCTAAATGATTGGGTGTAAAACGTATGTAGGTAGCTTT-TAAGCTTGCTGT 254749 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTG-CACGACTAGAGTGTGTCAG 181 ||||||| ||||| |||| ||| || | | ||| || | ||||||| | || Sbjct 254750 CAAATCCCTGGGCTCAACCCCGGATAGGCGGTGGAAACTATCAAG-CTAGAGTACGGTAG 254808 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 || |||||| | ||| |||||||||||||||||| | | | ||||||||| | Sbjct 254809 GGGCAAAGGGAATTTCCGGTGGAGCAGTGAAATGCGTAGAGACCAGAAAGAACACCAACG 254868 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||| ||| | |||| |||||||| || | |||||| ||||||| || Sbjct 254869 GCGAAAGCACTCTGTTGGGCCGACACTGACACTGAGAGGTGAAAGCTAGGGGAGCGAATG 254928 Query 302 GGATTAGATACCCTGGTAGT 321 |||||||||||||| ||||| Sbjct 254929 GGATTAGATACCCTAGTAGT 254948 >seq23 Length=5704166 Score = 82.4 bits (90), Expect = 2e-13 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| || ||||||||||| || | | ||| ||||| || ||| || Sbjct 2949721 GGAATTTCTGGTGGAGCGGTAAAATGCGTAGAGATCGGAAAGAATACCAACGGTGAAAGC 2949662 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | || || ||||| || || | ||||||| |||||| || |||||||| Sbjct 2949661 ACTCTGCTAGGCCGACACTAACACTGAGAGGCGAAAGCTAGGGGAGTGAATGGGATTAGA 2949602 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| ||||||| ||| |||||||| Sbjct 2949601 TACCCCAGTAGTCCTAGCCGTAAACGAT 2949574 >seq86 Length=7715951 Score = 78.8 bits (86), Expect = 2e-12 Identities = 73/93 (78%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||| || |||| ||||||| ||| ||| Sbjct 6354647 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAACAACCGCAGTAATACAGAGGATGC 6354588 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGT 95 |||||||| | ||| | ||| | |||||||| Sbjct 6354587 AAGCGTTATCTGAAATGATTGGACATAAAGCGT 6354555 >seq17 Length=1205220 Score = 75.2 bits (82), Expect = 3e-11 Identities = 94/129 (73%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 13 ATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAAT 72 || |||| ||||||||| |||||| |||| | |||||||| ||| | | | |||| Sbjct 1123183 ATCAGCATCGGCTAACTCTGTGCCAACAGCTGTGGTAATACAGAGGATACGAATGTTACC 1123124 Query 73 CGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCG 132 || ||| | | |||||||||||| ||||| | | | |||| | | || ||||| | Sbjct 1123123 CGAAATGATTAGGCGTAAAGCGTTTGCAGGTGACTTTTTAAGTCTGCCGTCAAATCTCGA 1123064 Query 133 GGCTTAACC 141 ||||||||| Sbjct 1123063 GGCTTAACC 1123055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289130895104