Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq31330 152 7e-35 seq24 131 2e-28 seq569 123 3e-26 seq276 118 1e-24 seq652 91.5 2e-16 seq74 91.5 2e-16 seq5812 87.8 2e-15 seq2764 82.4 1e-13 seq3956 80.6 4e-13 seq28361 77.0 5e-12 seq1392 77.0 5e-12 seq920 77.0 5e-12 >seq31330 Length=2953 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 2643 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 2701 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 2702 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 2759 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 2760 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 2810 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 2811 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 2870 Query 246 GTA 248 ||| Sbjct 2871 GTA 2873 >seq24 Length=10012559 Score = 131 bits (144), Expect = 2e-28 Identities = 177/244 (73%), Gaps = 22/244 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 3988385 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3988443 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||| |||||| || || |||||||| || Sbjct 3988444 TGTGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 3988490 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 3988491 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3988544 Query 186 TAACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244 || | |||| | || | ||||| ||||||||||||| ||||||||||| |||| Sbjct 3988545 TAGAGAGAGTTGTCTCGTGC-CCTTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCG 3988603 Query 245 GGTA 248 |||| Sbjct 3988604 GGTA 3988607 Score = 114 bits (126), Expect = 2e-23 Identities = 171/243 (70%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||| ||||||||| || |||||| | ||||| | ||| || ||| Sbjct 3990509 CCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACT 3990567 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 3990568 TGTGTTTTTGGTAAACAGTCGCCCGGTCCTGGTCACTGCGACCCCCT------------- 3990614 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || |||||||||||| |||||||||||||| |||||||| | ||||| Sbjct 3990615 TTGTG----AGGAG--GCACCCCTTCTCTCGAAGTTACGGGGCTATTTTGCCAAGTTCCT 3990668 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| ||| ||||||| |||| | Sbjct 3990669 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCAGTTTCGG 3990728 Query 246 GTA 248 ||| Sbjct 3990729 GTA 3990731 >seq569 Length=4400913 Score = 123 bits (136), Expect = 3e-26 Identities = 173/243 (71%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | || | ||| Sbjct 259952 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GAATTTGTGTAGACT 259894 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||||||||||||| | | ||| || |||||||| | Sbjct 259893 TGTGTTTTTAGTAAACAGTCACCTGAGCCTAGTCACTGCGACCCCTT------------- 259847 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||| |||||||||||||||||||| |||||||||| ||||| Sbjct 259846 TTGTG----AGGAG--GCACCTCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCT 259793 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 259792 TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 259733 Query 246 GTA 248 ||| Sbjct 259732 GTA 259730 >seq276 Length=2778623 Score = 118 bits (130), Expect = 1e-24 Identities = 171/242 (71%), Gaps = 21/242 (9%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 |||| ||| |||||| ||||| || |||||| | ||||| | ||| ||| |||||| Sbjct 1912446 TTCCGGCACTAGGCAGGTGTCAGCCCCCATACATGGTCTTAC-GACTTTGCAGAGACCTG 1912388 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 ||||||| |||||||||||| || || || ||||| | | | Sbjct 1912387 TGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTACGACC-------------CTCTTT 1912341 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || | | |||||||||||||||||||||||||||| |||||||| | ||||||| Sbjct 1912340 GT------GATGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCAAGTTCCTTA 1912287 Query 188 ACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | |||| | || | || || ||||||||||||| |||||||||||| ||| || Sbjct 1912286 GAGAGAGTTGTCTCGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGCTTTCGGG 1912227 Query 247 TA 248 || Sbjct 1912226 TA 1912225 >seq652 Length=2384379 Score = 91.5 bits (100), Expect = 2e-16 Identities = 170/248 (69%), Gaps = 20/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||| | ||| |||||||||||| || ||||||| | ||||| | ||| | Sbjct 212441 CTTAACCTTTCGGCACTGGGCAGGCGTCAACCCCTATACATGGTCTTAC-GACTTTGTGG 212383 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||| | || || || ||||| | || Sbjct 212382 AGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTTCGACCCC-------TC- 212331 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | || || || |||||| |||| | ||||||||||||| |||||||||| Sbjct 212330 -----TTGTG----AGGAG--GCACCCTTTCTTCTGAAGTTACGGGGCTATTTTGCCGAG 212282 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | | | ||| |||||||||| || ||| || ||||| | Sbjct 212281 TTCCTTAGAGAGAGTTGTCTCACGCCCCTAGGTATTCTCTATCTACCCATCTATGTCGAT 212222 Query 241 TTACGGTA 248 || |||| Sbjct 212221 TTCAGGTA 212214 >seq74 Length=10145792 Score = 91.5 bits (100), Expect = 2e-16 Identities = 165/243 (68%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||| | ||| |||||||||||| || |||||| | |||| | ||| || ||| Sbjct 509041 CCTTTCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTAT-GACTTTGCGGAGACT 509099 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| ||||||||||||| || || |||| ||| | Sbjct 509100 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCAACCCCT-------------- 509145 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | || || |||||| |||||| ||||||||||||| |||||| ||| ||| | Sbjct 509146 ---TTTATGAGGAG--GCACCCTTTCTCCTGAAGTTACGGGGCTATTTTGTCGAGTTCGT 509200 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | | || | | | ||| ||||||||||||| |||||||||||| ||| | Sbjct 509201 TAGAGAGATTTGTCTCACGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGATTTCAG 509260 Query 246 GTA 248 ||| Sbjct 509261 GTA 509263 >seq5812 Length=866 Score = 87.8 bits (96), Expect = 2e-15 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 |||||| |||| |||| ||||||||| | ||||||||||| |||||||| | ||| | Sbjct 314 TGGCACACCTTATCCCTAAGTTACGGAGTCATTTTGCCGAGTTCCTTAATGATTGTTATC 255 Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 | |||||||| ||||||||||| || || ||||| |||| Sbjct 254 TCTAACGCCTTTGTATTCTCTACTTGCTTACTTGTGTTAGTTT 212 >seq2764 Length=4463 Score = 82.4 bits (90), Expect = 1e-13 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | |||| || ||| || Sbjct 4132 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGG 4074 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGC 87 ||||||||||||| |||||||||||| Sbjct 4073 AGACCTGTGTTTTTGGTAAACAGTCGC 4047 >seq3956 Length=4762 Score = 80.6 bits (88), Expect = 4e-13 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT-AACCACAGTTCACCCGAAC 205 |||||| |||||||||||| | | ||||||| |||||| ||| || ||| | | | | Sbjct 3555 CCTTCTTCCGAAGTTACGGAGGTAAATTGCCGAGTTCCTTCAACGTCA-TTCTCTCAAGC 3497 Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 |||| |||| ||||||| | |||||||||||||||| |||| Sbjct 3496 GCCTCGGTATGCTCTACCAGTCCACCTGTGTCGGTTTCGGGTA 3454 >seq28361 Length=1991474 Score = 77.0 bits (84), Expect = 5e-12 Identities = 72/92 (78%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||| |||||| ||||||||| | | |||||||||||||||||| | |||| | Sbjct 604261 GGCACCCTTTCTCCTGAAGTTACGAGACTATTTTGCCGAATTCCTTAGAGAGAGTTGTCT 604320 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCT 232 | | ||| ||||||||||||| |||||| Sbjct 604321 TGTGCCCCTAGGTATTCTCTACCTACCCACCT 604352 >seq1392 Length=33700 Score = 77.0 bits (84), Expect = 5e-12 Identities = 69/87 (79%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 139 GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| || |||| |||| ||||||||| | ||||||||||| |||||||| | ||| Sbjct 29638 GTGGTACACCTTATCCCTAAGTTACGGAGTCATTTTGCCGAGTTCCTTAATAATTGTTAT 29697 Query 199 CCCGAACGCCTTAGTATTCTCTACCTG 225 | | |||||||| |||| |||||| || Sbjct 29698 CTCTAACGCCTTTGTATACTCTACTTG 29724 >seq920 Length=30821 Score = 77.0 bits (84), Expect = 5e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199 ||| || |||| |||||||||||||| | || |||||||| |||||||| | ||| | Sbjct 30098 TGGTACACCTTATCCCGAAGTTACGGAGTCAATTTGCCGAGTTCCTTAATAATTGTTATC 30039 Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | |||||||| |||| |||||| || || ||||| Sbjct 30038 TCAAACGCCTTTGTATACTCTACTTGCTTACTTGTGT 30002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694155298648