Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000538.1
Length=248
Score E
Sequences producing significant alignments: (Bits) Value
seq31330 152 7e-35
seq24 131 2e-28
seq569 123 3e-26
seq276 118 1e-24
seq652 91.5 2e-16
seq74 91.5 2e-16
seq5812 87.8 2e-15
seq2764 82.4 1e-13
seq3956 80.6 4e-13
seq28361 77.0 5e-12
seq1392 77.0 5e-12
seq920 77.0 5e-12
>seq31330
Length=2953
Score = 152 bits (168), Expect = 7e-35
Identities = 181/243 (74%), Gaps = 12/243 (5%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | ||
Sbjct 2643 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 2701
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||| |||||||||||| ||| || | | ||| | | | |||| |
Sbjct 2702 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 2759
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || | ||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2760 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 2810
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
| || |||| | | | |||| |||||| |||||| || ||||||||||||||| |
Sbjct 2811 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 2870
Query 246 GTA 248
|||
Sbjct 2871 GTA 2873
>seq24
Length=10012559
Score = 131 bits (144), Expect = 2e-28
Identities = 177/244 (73%), Gaps = 22/244 (9%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | ||| || ||||
Sbjct 3988385 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 3988443
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| ||||| |||||| || || |||||||| ||
Sbjct 3988444 TGTGTTTTTGGTAAATAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 3988490
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 3988491 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 3988544
Query 186 TAACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTAC 244
|| | |||| | || | ||||| ||||||||||||| ||||||||||| ||||
Sbjct 3988545 TAGAGAGAGTTGTCTCGTGC-CCTTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTCG 3988603
Query 245 GGTA 248
||||
Sbjct 3988604 GGTA 3988607
Score = 114 bits (126), Expect = 2e-23
Identities = 171/243 (70%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||| ||||||||| || |||||| | ||||| | ||| || |||
Sbjct 3990509 CCTTCCGGCACTGGGTAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACT 3990567
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| |||||||||||| || || |||||||| ||
Sbjct 3990568 TGTGTTTTTGGTAAACAGTCGCCCGGTCCTGGTCACTGCGACCCCCT------------- 3990614
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || |||||||||||| |||||||||||||| |||||||| | |||||
Sbjct 3990615 TTGTG----AGGAG--GCACCCCTTCTCTCGAAGTTACGGGGCTATTTTGCCAAGTTCCT 3990668
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| ||| ||||||| |||| |
Sbjct 3990669 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCATCTGTGTCAGTTTCGG 3990728
Query 246 GTA 248
|||
Sbjct 3990729 GTA 3990731
>seq569
Length=4400913
Score = 123 bits (136), Expect = 3e-26
Identities = 173/243 (71%), Gaps = 20/243 (8%)
Strand=Plus/Minus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||||| ||| ||||||||||||| || |||||| | ||||| | || | |||
Sbjct 259952 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GAATTTGTGTAGACT 259894
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
|||||||||||||||||||| | | ||| || |||||||| |
Sbjct 259893 TGTGTTTTTAGTAAACAGTCACCTGAGCCTAGTCACTGCGACCCCTT------------- 259847
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
| || || || ||||| |||||||||||||||||||| |||||||||| |||||
Sbjct 259846 TTGTG----AGGAG--GCACCTCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCT 259793
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | |||| | || | ||| ||||||||||||| |||||||||||||||| |
Sbjct 259792 TAGAGAGAGTTGTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 259733
Query 246 GTA 248
|||
Sbjct 259732 GTA 259730
>seq276
Length=2778623
Score = 118 bits (130), Expect = 1e-24
Identities = 171/242 (71%), Gaps = 21/242 (9%)
Strand=Plus/Minus
Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67
|||| ||| |||||| ||||| || |||||| | ||||| | ||| ||| ||||||
Sbjct 1912446 TTCCGGCACTAGGCAGGTGTCAGCCCCCATACATGGTCTTAC-GACTTTGCAGAGACCTG 1912388
Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127
||||||| |||||||||||| || || || ||||| | | |
Sbjct 1912387 TGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTACGACC-------------CTCTTT 1912341
Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187
|| | | |||||||||||||||||||||||||||| |||||||| | |||||||
Sbjct 1912340 GT------GATGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCAAGTTCCTTA 1912287
Query 188 ACCACAGTTCACCCGAACGCCTTA-GTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246
| |||| | || | || || ||||||||||||| |||||||||||| ||| ||
Sbjct 1912286 GAGAGAGTTGTCTCGTGCCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGCTTTCGGG 1912227
Query 247 TA 248
||
Sbjct 1912226 TA 1912225
>seq652
Length=2384379
Score = 91.5 bits (100), Expect = 2e-16
Identities = 170/248 (69%), Gaps = 20/248 (8%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||| | ||| |||||||||||| || ||||||| | ||||| | ||| |
Sbjct 212441 CTTAACCTTTCGGCACTGGGCAGGCGTCAACCCCTATACATGGTCTTAC-GACTTTGTGG 212383
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120
||||||||||||| |||||||||| | || || || ||||| | ||
Sbjct 212382 AGACCTGTGTTTTTGGTAAACAGTCACCCGGGCCTGGTCACTTCGACCCC-------TC- 212331
Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180
| || || || |||||| |||| | ||||||||||||| ||||||||||
Sbjct 212330 -----TTGTG----AGGAG--GCACCCTTTCTTCTGAAGTTACGGGGCTATTTTGCCGAG 212282
Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240
||||||| | |||| | | | ||| |||||||||| || ||| || ||||| |
Sbjct 212281 TTCCTTAGAGAGAGTTGTCTCACGCCCCTAGGTATTCTCTATCTACCCATCTATGTCGAT 212222
Query 241 TTACGGTA 248
|| ||||
Sbjct 212221 TTCAGGTA 212214
>seq74
Length=10145792
Score = 91.5 bits (100), Expect = 2e-16
Identities = 165/243 (68%), Gaps = 20/243 (8%)
Strand=Plus/Plus
Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65
|||| | ||| |||||||||||| || |||||| | |||| | ||| || |||
Sbjct 509041 CCTTTCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTAT-GACTTTGCGGAGACT 509099
Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125
||||||||| ||||||||||||| || || |||| ||| |
Sbjct 509100 TGTGTTTTTGGTAAACAGTCGCTCGGGCCTGGTCACTGCAACCCCT-------------- 509145
Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185
|| | || || |||||| |||||| ||||||||||||| |||||| ||| ||| |
Sbjct 509146 ---TTTATGAGGAG--GCACCCTTTCTCCTGAAGTTACGGGGCTATTTTGTCGAGTTCGT 509200
Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245
|| | | || | | | ||| ||||||||||||| |||||||||||| ||| |
Sbjct 509201 TAGAGAGATTTGTCTCACGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGATTTCAG 509260
Query 246 GTA 248
|||
Sbjct 509261 GTA 509263
>seq5812
Length=866
Score = 87.8 bits (96), Expect = 2e-15
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199
|||||| |||| |||| ||||||||| | ||||||||||| |||||||| | ||| |
Sbjct 314 TGGCACACCTTATCCCTAAGTTACGGAGTCATTTTGCCGAGTTCCTTAATGATTGTTATC 255
Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242
| |||||||| ||||||||||| || || ||||| ||||
Sbjct 254 TCTAACGCCTTTGTATTCTCTACTTGCTTACTTGTGTTAGTTT 212
>seq2764
Length=4463
Score = 82.4 bits (90), Expect = 1e-13
Identities = 71/87 (82%), Gaps = 1/87 (1%)
Strand=Plus/Minus
Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60
|||| |||||| ||| ||||||||||||| || |||||| | |||| || ||| ||
Sbjct 4132 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGG 4074
Query 61 GGACCTGTGTTTTTAGTAAACAGTCGC 87
||||||||||||| ||||||||||||
Sbjct 4073 AGACCTGTGTTTTTGGTAAACAGTCGC 4047
>seq3956
Length=4762
Score = 80.6 bits (88), Expect = 4e-13
Identities = 81/103 (79%), Gaps = 2/103 (2%)
Strand=Plus/Minus
Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT-AACCACAGTTCACCCGAAC 205
|||||| |||||||||||| | | ||||||| |||||| ||| || ||| | | | |
Sbjct 3555 CCTTCTTCCGAAGTTACGGAGGTAAATTGCCGAGTTCCTTCAACGTCA-TTCTCTCAAGC 3497
Query 206 GCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248
|||| |||| ||||||| | |||||||||||||||| ||||
Sbjct 3496 GCCTCGGTATGCTCTACCAGTCCACCTGTGTCGGTTTCGGGTA 3454
>seq28361
Length=1991474
Score = 77.0 bits (84), Expect = 5e-12
Identities = 72/92 (78%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200
||||||| |||||| ||||||||| | | |||||||||||||||||| | |||| |
Sbjct 604261 GGCACCCTTTCTCCTGAAGTTACGAGACTATTTTGCCGAATTCCTTAGAGAGAGTTGTCT 604320
Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCT 232
| | ||| ||||||||||||| ||||||
Sbjct 604321 TGTGCCCCTAGGTATTCTCTACCTACCCACCT 604352
>seq1392
Length=33700
Score = 77.0 bits (84), Expect = 5e-12
Identities = 69/87 (79%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 139 GTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCA 198
|||| || |||| |||| ||||||||| | ||||||||||| |||||||| | |||
Sbjct 29638 GTGGTACACCTTATCCCTAAGTTACGGAGTCATTTTGCCGAGTTCCTTAATAATTGTTAT 29697
Query 199 CCCGAACGCCTTAGTATTCTCTACCTG 225
| | |||||||| |||| |||||| ||
Sbjct 29698 CTCTAACGCCTTTGTATACTCTACTTG 29724
>seq920
Length=30821
Score = 77.0 bits (84), Expect = 5e-12
Identities = 75/97 (77%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 140 TGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCAC 199
||| || |||| |||||||||||||| | || |||||||| |||||||| | ||| |
Sbjct 30098 TGGTACACCTTATCCCGAAGTTACGGAGTCAATTTGCCGAGTTCCTTAATAATTGTTATC 30039
Query 200 CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236
| |||||||| |||| |||||| || || |||||
Sbjct 30038 TCAAACGCCTTTGTATACTCTACTTGCTTACTTGTGT 30002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694155298648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |