Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq24 87.8 2e-15
seq31330 86.0 7e-15
seq276 86.0 7e-15
seq569 84.2 2e-14
seq652 75.2 1e-11
>seq24
Length=10012559
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 3988546 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 3988489
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| ||| |||| |||||||||||| ||
Sbjct 3988488 GGGGTCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCT 3988439
>seq31330
Length=2953
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 2868 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 2809
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 2808 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 2769
>seq276
Length=2778623
Score = 86.0 bits (94), Expect = 7e-15
Identities = 91/118 (77%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| || |||
Sbjct 1912287 TAAGGAACTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCATCACAAA--- 1912343
Query 140 GAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
||||| || || || ||| || ||| |||||||| |||||||||||| || ||| ||
Sbjct 1912344 GAGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 1912401
>seq569
Length=4400913
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/105 (78%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | |||| |||||||||||| || ||| ||| | || ||| ||
Sbjct 259791 TAAGGAACTCGGCAAAATAACCCCGTAACTTCGGGAGAAGAGGTGCCTCCTCACAAAAGG 259850
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184
|| ||||| || |||| |||| |||||||| |||||||||
Sbjct 259851 --GGTCGCAGTGACTAGGCTCAGGTGACTGTTTACTAAAAACACA 259893
>seq652
Length=2384379
Score = 75.2 bits (82), Expect = 1e-11
Identities = 83/110 (75%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||| | | ||||||| ||| | || || ||
Sbjct 212275 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCAGAAGAAAGGGTGCCTCCTCACAAGAGG 212334
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| | || || || ||| || || |||||||| |||||||||||| ||
Sbjct 212335 G--GTCGAAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCT 212382
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531012809104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |