Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 2e-15 seq31330 86.0 7e-15 seq276 86.0 7e-15 seq569 84.2 2e-14 seq652 75.2 1e-11 >seq24 Length=10012559 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 3988546 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 3988489 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| ||| |||| |||||||||||| || Sbjct 3988488 GGGGTCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCT 3988439 >seq31330 Length=2953 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 2868 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 2809 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 2808 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 2769 >seq276 Length=2778623 Score = 86.0 bits (94), Expect = 7e-15 Identities = 91/118 (77%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| || ||| Sbjct 1912287 TAAGGAACTTGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCATCACAAA--- 1912343 Query 140 GAGGG-CGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 ||||| || || || ||| || ||| |||||||| |||||||||||| || ||| || Sbjct 1912344 GAGGGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAA 1912401 >seq569 Length=4400913 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/105 (78%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | |||| |||||||||||| || ||| ||| | || ||| || Sbjct 259791 TAAGGAACTCGGCAAAATAACCCCGTAACTTCGGGAGAAGAGGTGCCTCCTCACAAAAGG 259850 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACA 184 || ||||| || |||| |||| |||||||| ||||||||| Sbjct 259851 --GGTCGCAGTGACTAGGCTCAGGTGACTGTTTACTAAAAACACA 259893 >seq652 Length=2384379 Score = 75.2 bits (82), Expect = 1e-11 Identities = 83/110 (75%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||| | | ||||||| ||| | || || || Sbjct 212275 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCAGAAGAAAGGGTGCCTCCTCACAAGAGG 212334 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | | || || || ||| || || |||||||| |||||||||||| || Sbjct 212335 G--GTCGAAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCT 212382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531012809104