Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3956 100 3e-19 seq31330 91.5 1e-16 seq652 87.8 2e-15 seq24 84.2 2e-14 seq2764 82.4 7e-14 seq276 78.8 9e-13 >seq3956 Length=4762 Score = 100 bits (110), Expect = 3e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 || |||||||| |||||||||| ||||||| || || ||| |||||||||||| ||| Sbjct 3715 GCAACTGTTTAACAAAAACACAGGACTCTGCGAAATCGCAAGATGACGTATAGGGTCTGA 3774 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||||||||||||||||||| || Sbjct 3775 CGCCTGCCCGGTGCCGGAAGGTCAA 3799 >seq31330 Length=2953 Score = 91.5 bits (100), Expect = 1e-16 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 2736 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 2677 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149 |||||| || |||| |||||||||||| ||||||| Sbjct 2676 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 2642 >seq652 Length=2384379 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 |||||||| |||||||| | ||||||||| |||||||||| ||| |||| || Sbjct 212335 GGTCGAAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCTCCACAAAGTCGT 212394 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||||||| |||||||||||| |||||| |||||||| Sbjct 212395 AAGACCATGTATAGGGGTTGACGCCTGCCCAGTGCCGAAAGGTTAA 212440 >seq24 Length=10012559 Score = 84.2 bits (92), Expect = 2e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| |||||| |||| |||||||||| ||| ||||| || Sbjct 3988486 GGTCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCTCCGCAAAGTCGT 3988427 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 3988426 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 3988381 Score = 75.2 bits (82), Expect = 1e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||| | ||||||||||| ||||||||| ||| ||||| || Sbjct 3990610 GGTCGCAGTGACCAGGACCGGGCGACTGTTTACCAAAAACACAAGTCTCCGCAAAGTCGT 3990551 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||| ||| |||||||||||| || Sbjct 3990550 AAGACCATGTATGGGGGCTGACGCCTACCCAGTGCCGGAAGGTCAA 3990505 >seq2764 Length=4463 Score = 82.4 bits (90), Expect = 7e-14 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| |||||||||| ||| ||||| || ||| | |||| ||| ||| Sbjct 4047 GCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGA 4106 Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152 ||||||||| ||||||||||||||| Sbjct 4107 CGCCTGCCCAGTGCCGGAAGGTTAA 4131 >seq276 Length=2778623 Score = 78.8 bits (86), Expect = 9e-13 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||||||||| || Sbjct 1912347 GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGT 1912406 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||| |||||| ||||||||| || || Sbjct 1912407 AAGACCATGTATGGGGGCTGACACCTGCCTAGTGCCGGAAAGTCAA 1912452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476631979256