Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 100 3e-19
seq31330 91.5 1e-16
seq652 87.8 2e-15
seq24 84.2 2e-14
seq2764 82.4 7e-14
seq276 78.8 9e-13
>seq3956
Length=4762
Score = 100 bits (110), Expect = 3e-19
Identities = 73/85 (86%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
|| |||||||| |||||||||| ||||||| || || ||| |||||||||||| |||
Sbjct 3715 GCAACTGTTTAACAAAAACACAGGACTCTGCGAAATCGCAAGATGACGTATAGGGTCTGA 3774
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
|||||||||||||||||||||| ||
Sbjct 3775 CGCCTGCCCGGTGCCGGAAGGTCAA 3799
>seq31330
Length=2953
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 2736 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 2677
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 2676 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 2642
>seq652
Length=2384379
Score = 87.8 bits (96), Expect = 2e-15
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
|||||||| |||||||| | ||||||||| |||||||||| ||| |||| ||
Sbjct 212335 GGTCGAAGTGACCAGGCCCGGGTGACTGTTTACCAAAAACACAGGTCTCCACAAAGTCGT 212394
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||||||| |||||||||||| |||||| ||||||||
Sbjct 212395 AAGACCATGTATAGGGGTTGACGCCTGCCCAGTGCCGAAAGGTTAA 212440
>seq24
Length=10012559
Score = 84.2 bits (92), Expect = 2e-14
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| |||||| |||| |||||||||| ||| ||||| ||
Sbjct 3988486 GGTCGCAGTGACCAGGCCCGGGCGACTATTTACCAAAAACACAGGTCTCCGCAAAGTCGT 3988427
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||| ||
Sbjct 3988426 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 3988381
Score = 75.2 bits (82), Expect = 1e-11
Identities = 80/106 (75%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||| | ||||||||||| ||||||||| ||| ||||| ||
Sbjct 3990610 GGTCGCAGTGACCAGGACCGGGCGACTGTTTACCAAAAACACAAGTCTCCGCAAAGTCGT 3990551
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||| ||| |||||||||||| ||
Sbjct 3990550 AAGACCATGTATGGGGGCTGACGCCTACCCAGTGCCGGAAGGTCAA 3990505
>seq2764
Length=4463
Score = 82.4 bits (90), Expect = 7e-14
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| ||| ||||| || ||| | |||| ||| |||
Sbjct 4047 GCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGA 4106
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
||||||||| |||||||||||||||
Sbjct 4107 CGCCTGCCCAGTGCCGGAAGGTTAA 4131
>seq276
Length=2778623
Score = 78.8 bits (86), Expect = 9e-13
Identities = 81/106 (76%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||||||||| ||
Sbjct 1912347 GGTCGTAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTCGT 1912406
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||| |||||| ||||||||| || ||
Sbjct 1912407 AAGACCATGTATGGGGGCTGACACCTGCCTAGTGCCGGAAAGTCAA 1912452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476631979256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |