Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3956 187 5e-45 seq24 174 3e-41 seq74 159 7e-37 seq276 136 8e-30 seq652 131 3e-28 seq569 120 6e-25 seq31330 107 4e-21 >seq3956 Length=4762 Score = 187 bits (206), Expect = 5e-45 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 |||||||||||||||||||||||||||||||||||||||||||||| | | | || ||| Sbjct 4171 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTAGGCTC 4230 Query 187 AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246 || || ||||| | || ||||||| |||| ||| || ||||||||| || Sbjct 4231 AGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCCTGCCTGACTGCGAGACGG 4290 Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306 || ||| ||||| |||||||||||| | || |||||||| ||| | | |||||| |||| Sbjct 4291 ACATGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCATGGAAGGGCC 4350 Query 307 GTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 4351 ATCGCTCAACGGATAAAAGGTACGCCGGGGATA 4383 >seq24 Length=10012559 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 3988006 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 3987947 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| || | || | | |||||||||||| ||||| Sbjct 3987946 GTGCAAAGGTTTCCTCGGGCCGGACAGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 3987888 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| |||| || ||| Sbjct 3987887 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATTCGACGG 3987828 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 3987827 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 3987778 >seq74 Length=10145792 Score = 159 bits (176), Expect = 7e-37 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| |||| |||||| Sbjct 508636 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATGGAGGC 508577 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | ||| ||| | || | || ||||||||||| ||||| Sbjct 508576 GTACAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCAAGTGCAAAGGCAGAAGGGA 508518 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| ||||||||||| || Sbjct 508517 GCTTGACTGCAAGACCCACCGGTCAAGCAGGGACGAAAGTCGGCCTTAATGATCCAATGG 508458 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | ||||| ||||||||||| | ||||||||| ||| | |||||| Sbjct 508457 TGCCAAGTGGAAGGGCCGTCGCTCAATGGATAAAAGTTACTTTAGGGATA 508408 >seq276 Length=2778623 Score = 136 bits (150), Expect = 8e-30 Identities = 159/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| ||||| | ||||| |||| ||||| |||| | |||| | |||| | Sbjct 1912852 CAGTTTTTATGGGGTGTAAGCCTCTCAAAAGGTAACAGAGGTGTGCAAACGTTTCCTCGG 1912911 Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247 || | ||| | || | | |||||||||||||||||| | |||||||| | |||| Sbjct 1912912 GCTGAACGGAGATTG-GCCCTCGAGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCA 1912970 Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 | ||| ||||||||| |||||||| |||| |||| || ||||| || ||||| ||||| Sbjct 1912971 CCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATTCGATGGTGCCGAGTGGAAGGGCCG 1913030 Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| ||||||||||| ||| || |||||| Sbjct 1913031 TCGCTAAACGGATAAAAGTTACTCTAGGGATA 1913062 >seq652 Length=2384379 Score = 131 bits (144), Expect = 3e-28 Identities = 154/206 (75%), Gaps = 12/206 (6%) Strand=Plus/Plus Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTG-----G 193 ||||| || ||||||| ||| ||||||| ||||| | |||| ||| || | Sbjct 212843 GGGCGTAGGCTTCCCAAAAGGTAGCGGAGGCATGCAAAGGTTTCCTCGAGCCTGACAGAG 212902 Query 194 ATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTC 253 || || || || |||||||||||| ||||| | |||||||| | || | | ||| Sbjct 212903 ATTGAC-CCTTG-----AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTC 212956 Query 254 TAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTC 313 ||||||||||||||| || |||| ||||||| |||| || ||||| ||||||||||| Sbjct 212957 GAGCAGGGACGAAAGTTGGCCTTAGTGATCCGATGGTGTCGAGTGGAAAGGCCGTCGCTC 213016 Query 314 GACGGATAAAAGCTACCCTGGGGATA 339 ||||||||||| ||| || |||||| Sbjct 213017 CACGGATAAAAGTTACTCTAGGGATA 213042 >seq569 Length=4400913 Score = 120 bits (132), Expect = 6e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AG 188 ||||| ||||||| |||||||||| ||||| ||||| | ||||| | |||| || Sbjct 260350 AGTTTCTATGGGGCGTAGGCCTCCCAAAAAGTAATGGAGGTGTGCAAAGGTTTCCTCGAG 260409 Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247 || | | ||| | || | | |||||||| ||| ||||| | |||| || | || | Sbjct 260410 CTAG-ACGGAGATTG-GCCCTCGAGTGCAAAAGCAGAAGGGAGCTTGATTGTAAGACTCA 260467 Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307 | || || |||||||||||||| |||| |||||| ||||| || ||||| ||||| Sbjct 260468 CCCGTTGAGTAGGGACGAAAGTCGACCTTAGTGATCCTATGGTGCCGAGTGGAAGGGCCG 260527 Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| ||||||||||| ||| || |||||| Sbjct 260528 TCGCTTAACGGATAAAAGTTACTCTAGGGATA 260559 >seq31330 Length=2953 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 2288 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 2229 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 2228 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 2174 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 2173 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 2114 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 2113 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 2063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982042642176