Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 187 5e-45
seq24 174 3e-41
seq74 159 7e-37
seq276 136 8e-30
seq652 131 3e-28
seq569 120 6e-25
seq31330 107 4e-21
>seq3956
Length=4762
Score = 187 bits (206), Expect = 5e-45
Identities = 169/213 (79%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186
|||||||||||||||||||||||||||||||||||||||||||||| | | | || |||
Sbjct 4171 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCGCGATGGTAGGCTC 4230
Query 187 AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCC 246
|| || ||||| | || ||||||| |||| ||| || ||||||||| ||
Sbjct 4231 AGACCGGTCGGAAATCGGTCGTCGAGTGCAATGGCATAAGCCTGCCTGACTGCGAGACGG 4290
Query 247 TCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCC 306
|| ||| ||||| |||||||||||| | || |||||||| ||| | | |||||| ||||
Sbjct 4291 ACATGTCGAGCAGAGACGAAAGTCGGTCATAGTGATCCGGTGGTCCCGCATGGAAGGGCC 4350
Query 307 GTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|||||| ||||||||||| ||| | |||||||
Sbjct 4351 ATCGCTCAACGGATAAAAGGTACGCCGGGGATA 4383
>seq24
Length=10012559
Score = 174 bits (192), Expect = 3e-41
Identities = 178/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 3988006 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 3987947
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| || | || | | |||||||||||| |||||
Sbjct 3987946 GTGCAAAGGTTTCCTCGGGCCGGACAGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 3987888
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| |||| || |||
Sbjct 3987887 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATTCGACGG 3987828
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| || ||||| ||||||||||| ||||||||||| ||| || ||||||
Sbjct 3987827 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 3987778
>seq74
Length=10145792
Score = 159 bits (176), Expect = 7e-37
Identities = 175/230 (76%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||| ||||||
Sbjct 508636 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAATGGAGGC 508577
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACA-GTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | ||| ||| | || | || ||||||||||| |||||
Sbjct 508576 GTACAAAGGTTTCCTCGGGCCGGACGGAGATTG-GCCCTCAAGTGCAAAGGCAGAAGGGA 508518
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| ||||||||||| ||
Sbjct 508517 GCTTGACTGCAAGACCCACCGGTCAAGCAGGGACGAAAGTCGGCCTTAATGATCCAATGG 508458
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||| | ||||| ||||||||||| | ||||||||| ||| | ||||||
Sbjct 508457 TGCCAAGTGGAAGGGCCGTCGCTCAATGGATAAAAGTTACTTTAGGGATA 508408
>seq276
Length=2778623
Score = 136 bits (150), Expect = 8e-30
Identities = 159/212 (75%), Gaps = 2/212 (1%)
Strand=Plus/Plus
Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188
|||||| ||||| | ||||| |||| ||||| |||| | |||| | |||| |
Sbjct 1912852 CAGTTTTTATGGGGTGTAAGCCTCTCAAAAGGTAACAGAGGTGTGCAAACGTTTCCTCGG 1912911
Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247
|| | ||| | || | | |||||||||||||||||| | |||||||| | ||||
Sbjct 1912912 GCTGAACGGAGATTG-GCCCTCGAGTGCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCA 1912970
Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307
| ||| ||||||||| |||||||| |||| |||| || ||||| || ||||| |||||
Sbjct 1912971 CCCGTCGAGCAGGGACAAAAGTCGGCCTTAGTGATTCGATGGTGCCGAGTGGAAGGGCCG 1913030
Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| ||||||||||| ||| || ||||||
Sbjct 1913031 TCGCTAAACGGATAAAAGTTACTCTAGGGATA 1913062
>seq652
Length=2384379
Score = 131 bits (144), Expect = 3e-28
Identities = 154/206 (75%), Gaps = 12/206 (6%)
Strand=Plus/Plus
Query 140 GGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AGCTTG-----G 193
||||| || ||||||| ||| ||||||| ||||| | |||| ||| || |
Sbjct 212843 GGGCGTAGGCTTCCCAAAAGGTAGCGGAGGCATGCAAAGGTTTCCTCGAGCCTGACAGAG 212902
Query 194 ATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTC 253
|| || || || |||||||||||| ||||| | |||||||| | || | | |||
Sbjct 212903 ATTGAC-CCTTG-----AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTC 212956
Query 254 TAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTC 313
||||||||||||||| || |||| ||||||| |||| || ||||| |||||||||||
Sbjct 212957 GAGCAGGGACGAAAGTTGGCCTTAGTGATCCGATGGTGTCGAGTGGAAAGGCCGTCGCTC 213016
Query 314 GACGGATAAAAGCTACCCTGGGGATA 339
||||||||||| ||| || ||||||
Sbjct 213017 CACGGATAAAAGTTACTCTAGGGATA 213042
>seq569
Length=4400913
Score = 120 bits (132), Expect = 6e-25
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 130 AGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC-AG 188
||||| ||||||| |||||||||| ||||| ||||| | ||||| | |||| ||
Sbjct 260350 AGTTTCTATGGGGCGTAGGCCTCCCAAAAAGTAATGGAGGTGTGCAAAGGTTTCCTCGAG 260409
Query 189 CTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCT 247
|| | | ||| | || | | |||||||| ||| ||||| | |||| || | || |
Sbjct 260410 CTAG-ACGGAGATTG-GCCCTCGAGTGCAAAAGCAGAAGGGAGCTTGATTGTAAGACTCA 260467
Query 248 CAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCG 307
| || || |||||||||||||| |||| |||||| ||||| || ||||| |||||
Sbjct 260468 CCCGTTGAGTAGGGACGAAAGTCGACCTTAGTGATCCTATGGTGCCGAGTGGAAGGGCCG 260527
Query 308 TCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
||||| ||||||||||| ||| || ||||||
Sbjct 260528 TCGCTTAACGGATAAAAGTTACTCTAGGGATA 260559
>seq31330
Length=2953
Score = 107 bits (118), Expect = 4e-21
Identities = 163/231 (71%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169
||||||| || || ||| ||||| ||||||||| |||||| |||||||||||||||
Sbjct 2288 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 2229
Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228
| | ||| || |||| ||| ||| | || || | || || | |||
Sbjct 2228 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 2174
Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288
|| |||||| || ||| | ||| | ||| |||||||||||| | || ||||||||
Sbjct 2173 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 2114
Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
|| | | ||||| ||| |||||| |||||| |||| ||| | |||||||
Sbjct 2113 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 2063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982042642176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |