Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 141 1e-31
seq31330 107 2e-21
seq2764 107 2e-21
seq16029 102 9e-20
seq24 96.9 4e-18
seq74 93.3 5e-17
seq652 84.2 2e-14
seq276 82.4 8e-14
seq569 78.8 1e-12
seq28361 77.0 4e-12
seq35146 73.4 4e-11
seq809 73.4 4e-11
>seq3956
Length=4762
Score = 141 bits (156), Expect = 1e-31
Identities = 116/145 (80%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 29 CTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCA 88
|||| |||| | ||| || | | |||||||||| | ||| ||||||||||||||| |
Sbjct 3997 CTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGACTTCAATTTCACTGAGCTGA 3938
Query 89 CGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAG 148
|| | ||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 3937 CGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAG 3878
Query 149 GAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||
Sbjct 3877 GAATTTCGCTACCTTAGGACCGTTA 3853
>seq31330
Length=2953
Score = 107 bits (118), Expect = 2e-21
Identities = 112/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| |||| || |||| || |||||||||| || | | ||||||||| |
Sbjct 2432 CGGGGTCTTCCCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 2491
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
| || | ||||||| |||||||||||||||||||| ||||| |
Sbjct 2492 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 2551
Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||||||||||||| ||||
Sbjct 2552 GACAAGGAATTTCGCTACCTTAGGACAGTTA 2582
>seq2764
Length=4463
Score = 107 bits (118), Expect = 2e-21
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || |||| || |||||||||| || | | ||||||| |||
Sbjct 4346 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 4287
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||||| ||||||||||||||||
Sbjct 4286 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 4228
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||||||||||||||||||||||
Sbjct 4227 ACAAGGAATTTCGCTACCTTAGGACCGTTA 4198
>seq16029
Length=140
Score = 102 bits (112), Expect = 9e-20
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
|||||||||| |||| | ||| || | | |||||||||| | | | |||||||||||
Sbjct 16 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 75
Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142
|||| ||| | ||||||| ||| ||||||||||||||||||||||||||
Sbjct 76 AGCTGACGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCC 135
Query 143 GACAA 147
|||||
Sbjct 136 GACAA 140
>seq24
Length=10012559
Score = 96.9 bits (106), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3988254 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 3988313
Query 173 A 173
|
Sbjct 3988314 A 3988314
>seq74
Length=10145792
Score = 93.3 bits (102), Expect = 5e-17
Identities = 110/152 (72%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
||||||||| |||| || |||| || |||||||||| | | |||||||||||
Sbjct 508822 GGGTCTTTTTGTCCAGGTGCAGGTAGTCCGCATCTTCACATACATGTTTATTTCACTGAG 508881
Query 85 ---CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141
||| | | ||| || ||| || ||||||| ||| ||||||||||
Sbjct 508882 TTTCTCTCCG---AGATAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTTGGAACTTACC 508938
Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||| |||||||||||||||||
Sbjct 508939 CGACAAGGAATTTCACTACCTTAGGACCGTTA 508970
>seq652
Length=2384379
Score = 84.2 bits (92), Expect = 2e-14
Identities = 55/61 (90%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 212567 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCACTACTTTAGGACCATT 212508
Query 173 A 173
|
Sbjct 212507 A 212507
>seq276
Length=2778623
Score = 82.4 bits (90), Expect = 8e-14
Identities = 105/149 (70%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|||||||| |||| || ||| | |||||||||| || | | ||||||| |||
Sbjct 1912667 GGGTCTTTCTGTCCATGTGCAAGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAG 1912608
Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144
| | ||||||| ||| || ||| ||| |||| ||||||||||||
Sbjct 1912607 TTTCTCTTCGAGACAGTGCCTAAATCGTTACGCCTTTCATGCTGGTCAGAACTTACCCGA 1912548
Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173
||||||||||| ||||||||||||||||
Sbjct 1912547 CAAGGAATTTCATTACCTTAGGACCGTTA 1912519
>seq569
Length=4400913
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || |||||| ||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 260083 TACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGTTACCTTAGAACCTTT 260024
Query 173 A 173
|
Sbjct 260023 A 260023
>seq28361
Length=1991474
Score = 77.0 bits (84), Expect = 4e-12
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 124 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
||| |||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 604026 TGCGGGTCGGAACTTACCCGACAAGGAATTTCACTATCTTAGGACCGTTA 604075
>seq35146
Length=11046
Score = 73.4 bits (80), Expect = 4e-11
Identities = 52/60 (87%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||| ||| |||| ||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 5023 TACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTTGGATCGTT 4964
>seq809
Length=1236355
Score = 73.4 bits (80), Expect = 4e-11
Identities = 51/58 (88%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 115 CACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||||||||||||||| ||||||||| ||||| ||||| |||| | ||||||| ||
Sbjct 1120505 CACCATTCGTGCAGGTCGAAACTTACCCAACAAGAAATTTTGCTATCATAGGACCATT 1120448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547007170824
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |