Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq3956 141 1e-31 seq31330 107 2e-21 seq2764 107 2e-21 seq16029 102 9e-20 seq24 96.9 4e-18 seq74 93.3 5e-17 seq652 84.2 2e-14 seq276 82.4 8e-14 seq569 78.8 1e-12 seq28361 77.0 4e-12 seq35146 73.4 4e-11 seq809 73.4 4e-11 >seq3956 Length=4762 Score = 141 bits (156), Expect = 1e-31 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 29 CTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCA 88 |||| |||| | ||| || | | |||||||||| | ||| ||||||||||||||| | Sbjct 3997 CTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGACTTCAATTTCACTGAGCTGA 3938 Query 89 CGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAG 148 || | ||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 3937 CGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAG 3878 Query 149 GAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| Sbjct 3877 GAATTTCGCTACCTTAGGACCGTTA 3853 >seq31330 Length=2953 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 2432 CGGGGTCTTCCCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 2491 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 2492 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 2551 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 2552 GACAAGGAATTTCGCTACCTTAGGACAGTTA 2582 >seq2764 Length=4463 Score = 107 bits (118), Expect = 2e-21 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 4346 GGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 4287 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 4286 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 4228 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 4227 ACAAGGAATTTCGCTACCTTAGGACCGTTA 4198 >seq16029 Length=140 Score = 102 bits (112), Expect = 9e-20 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | ||| || | | |||||||||| | | | ||||||||||| Sbjct 16 CGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCACTG 75 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 |||| ||| | ||||||| ||| |||||||||||||||||||||||||| Sbjct 76 AGCTGACGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCC 135 Query 143 GACAA 147 ||||| Sbjct 136 GACAA 140 >seq24 Length=10012559 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3988254 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 3988313 Query 173 A 173 | Sbjct 3988314 A 3988314 >seq74 Length=10145792 Score = 93.3 bits (102), Expect = 5e-17 Identities = 110/152 (72%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||| |||| || |||| || |||||||||| | | ||||||||||| Sbjct 508822 GGGTCTTTTTGTCCAGGTGCAGGTAGTCCGCATCTTCACATACATGTTTATTTCACTGAG 508881 Query 85 ---CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 ||| | | ||| || ||| || ||||||| ||| |||||||||| Sbjct 508882 TTTCTCTCCG---AGATAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTTGGAACTTACC 508938 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||| ||||||||||||||||| Sbjct 508939 CGACAAGGAATTTCACTACCTTAGGACCGTTA 508970 >seq652 Length=2384379 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||||||||||||||||||||||||||| |||| |||||||| || Sbjct 212567 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCACTACTTTAGGACCATT 212508 Query 173 A 173 | Sbjct 212507 A 212507 >seq276 Length=2778623 Score = 82.4 bits (90), Expect = 8e-14 Identities = 105/149 (70%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| || ||| | |||||||||| || | | ||||||| ||| Sbjct 1912667 GGGTCTTTCTGTCCATGTGCAAGTAGTTCGCATCTTCACAGACATGTCTATTTCACCGAG 1912608 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | | ||||||| ||| || ||| ||| |||| |||||||||||| Sbjct 1912607 TTTCTCTTCGAGACAGTGCCTAAATCGTTACGCCTTTCATGCTGGTCAGAACTTACCCGA 1912548 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||| |||||||||||||||| Sbjct 1912547 CAAGGAATTTCATTACCTTAGGACCGTTA 1912519 >seq569 Length=4400913 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || |||||| ||||||||||||||||||||||||||||| |||||||| ||| || Sbjct 260083 TACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGTTACCTTAGAACCTTT 260024 Query 173 A 173 | Sbjct 260023 A 260023 >seq28361 Length=1991474 Score = 77.0 bits (84), Expect = 4e-12 Identities = 47/50 (94%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 124 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||| |||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 604026 TGCGGGTCGGAACTTACCCGACAAGGAATTTCACTATCTTAGGACCGTTA 604075 >seq35146 Length=11046 Score = 73.4 bits (80), Expect = 4e-11 Identities = 52/60 (87%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||| ||| |||| ||||||||| ||||||||||||||||||||| ||| |||| Sbjct 5023 TACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTTGGATCGTT 4964 >seq809 Length=1236355 Score = 73.4 bits (80), Expect = 4e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 115 CACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||| ||||||||| ||||| ||||| |||| | ||||||| || Sbjct 1120505 CACCATTCGTGCAGGTCGAAACTTACCCAACAAGAAATTTTGCTATCATAGGACCATT 1120448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547007170824