Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 226 6e-57
seq74 205 2e-50
seq35238 187 5e-45
seq652 170 4e-40
seq569 168 1e-39
seq86 168 1e-39
seq57 158 3e-36
seq276 105 1e-20
seq49 105 1e-20
seq85 86.0 1e-14
seq359 84.2 5e-14
>seq3956
Length=4762
Score = 226 bits (250), Expect = 6e-57
Identities = 168/194 (87%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || ||| || || | ||| |||||||||| ||||||||||||||| |||||
Sbjct 210 CTTTACAACCCTAAGGCCGTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 153
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||
Sbjct 152 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 93
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||| |||||||||||||||| || |||||||||| ||||| ||| ||||| |
Sbjct 92 TGTGGCTGGCCATCCTCTCAGACCAGCTATCGATCGTCGCCATGGTGGGCCGTTACCCCG 33
Query 181 CCAACTAGCTAATC 194
||| | ||||||||
Sbjct 32 CCATCCAGCTAATC 19
>seq74
Length=10145792
Score = 205 bits (226), Expect = 2e-50
Identities = 145/165 (88%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||| |||||||| || ||||||||||||||||||| || ||||||||||||||||||
Sbjct 514431 CACACGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTC 514489
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|| ||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| |
Sbjct 514490 CCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 514549
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193
|| |||| |||||||||| ||| | | ||||||||||||||||||
Sbjct 514550 ACTGATCATCGCCTTGGTAAGCTAATGCCTCACCAACTAGCTAAT 514594
>seq35238
Length=927
Score = 187 bits (206), Expect = 5e-45
Identities = 157/189 (83%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58
|||||||| | | | | ||||||| ||| |||||| |||| ||||||| |||||||||
Sbjct 187 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 130
Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118
||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| ||
Sbjct 129 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 70
Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178
|||||| |||||||||| ||||||| || | ||| | | |||||| |||| ||||||
Sbjct 69 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 10
Query 179 CACCAACTA 187
||||||||
Sbjct 9 GACCAACTA 1
>seq652
Length=2384379
Score = 170 bits (188), Expect = 4e-40
Identities = 138/166 (83%), Gaps = 1/166 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
||||||||||| || ||||||||| ||||||||| || ||||| ||||||||||||
Sbjct 207544 CACGCGGCATTA-CTCTGTCAGGCTTTTGCCCATTGTGGAAAATTCCACACTGCTGCCTC 207486
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|| | ||||| ||| |||||||||| | |||||||| ||||||||||||| || ||| |
Sbjct 207485 CCATTGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTTGGATCAGCT 207426
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
|| ||| |||||||||| ||| ||| ||||||||||||||||||
Sbjct 207425 ACTGATTATCGCCTTGGTAAGCTATTGTCTCACCAACTAGCTAATC 207380
>seq569
Length=4400913
Score = 168 bits (186), Expect = 1e-39
Identities = 128/151 (85%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106
||| ||||||||| |||| || ||||||||||||||||||| ||||| || ||| ||
Sbjct 254557 TCAAGCTTTCGCCTATTGCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCA 254498
Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166
||||||||| |||||||| ||||||| |||||| |||||| ||| |||| ||||||||||
Sbjct 254497 TGTCTCAGTCCCAGTGTGGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 254438
Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197
|| ||| ||||||||||||||||||| ||
Sbjct 254437 AAGTTATTGCCTCACCAACTAGCTAATCAGA 254407
>seq86
Length=7715951
Score = 168 bits (186), Expect = 1e-39
Identities = 140/170 (82%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||| |||||| || ||||||||| |||||||| || || |||||||||||||||
Sbjct 6354716 CACGTGGCATTA-CTCCGTCAGGCTTTTGCCCATTGCGAAAAATACCCCACTGCTGCCTC 6354774
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
||||||| || ||| |||||||||||| ||| |||| ||||||||||||||||| || |
Sbjct 6354775 CCGTAGGTGTTTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCTCTCAGACTAGCT 6354834
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198
| |||| |||||||| | || |||||||||| |||||||||||| |||
Sbjct 6354835 ATTGATCATCGCCTTGATAAGTTATTACCTCACTAACTAGCTAATCAGAC 6354884
>seq57
Length=727578
Score = 158 bits (174), Expect = 3e-36
Identities = 137/169 (81%), Gaps = 1/169 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|| || |||||| || ||||||||||||||||||| || ||||| || |||| ||||
Sbjct 288428 CATGCAGCATTG-CTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCTCATTGCTACCTC 288370
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|| ||||||||||| |||||||||||||| |||||| || |||||||||| || || |
Sbjct 288369 CCTTAGGAGTCTGGGCCGTGTCTCAGTTCTAGTGTGGCTTATCATCCTCTTGGATCAACT 288310
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197
| |||| ||| |||||| ||| ||| ||| |||||||||||||| ||
Sbjct 288309 ATTGATCATCGTCTTGGTAAGCTATTGCCTTGCCAACTAGCTAATCAGA 288261
Score = 145 bits (160), Expect = 2e-32
Identities = 141/180 (78%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|||||||||||| || ||||||||||||||||||| || |||||| | ||| |||
Sbjct 311822 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGTGAAAAATTCCCTATTGCAAACTC 311764
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
|| |||||| | | |||||||||||| | |||||| ||||||||||| | ||||| |
Sbjct 311763 CCTAAGGAGTTTAGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTTTTGGACCAACT 311704
Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208
| |||| ||| |||||| | | || ||||||||||||||||||| || | ||||||
Sbjct 311703 ATTGATCATCGTCTTGGTAACCTGTTGCCTCACCAACTAGCTAATCAGATGCAAGCTCAT 311644
>seq276
Length=2778623
Score = 105 bits (116), Expect = 1e-20
Identities = 99/121 (82%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGG-CTTTCGCCCATTGTCCAATATTCC 75
|||||||| | | ||||| |||| |||||| || ||||||||| |||||||| ||||
Sbjct 838778 CCTTCTTTG-CTCGCGCGGTATTG-CTGGATTTGGGCTTTCGCCCGTTGTCCAAGATTCT 838835
Query 76 CCACTGCTGC--CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133
|||||||||| ||||| | |||||| || | |||||||||| ||| |||| ||||||||
Sbjct 838836 CCACTGCTGCTGCTCCCATGGGAGTCCGGGCGGTGTCTCAGTCCCAATGTGGCTGATCAT 838895
Query 134 C 134
|
Sbjct 838896 C 838896
>seq49
Length=4798478
Score = 105 bits (116), Expect = 1e-20
Identities = 94/118 (80%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136
|| ||| |||| ||||| ||| ||| |||||||||| | ||| |||| || ||||| ||
Sbjct 2020417 CAATGCCGCCTTCCGTATTAGTATGGGCCGTGTCTCAATCCCAATGTGCCTAATCATTCT 2020358
Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194
||| |||||| || |||| || || || | ||| ||| |||||||||||||||||||
Sbjct 2020357 CTCGGACCAGCAACTGATCATCTCCATGATAAGCTATTGCCTCACCAACTAGCTAATC 2020300
>seq85
Length=5226098
Score = 86.0 bits (94), Expect = 1e-14
Identities = 94/124 (76%), Gaps = 1/124 (1%)
Strand=Plus/Plus
Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88
|| ||||||||| || ||| | ||||| |||||| || ||| ||||||||||||||
Sbjct 3576838 CATGCGGCATTG-CTCCGTCAAGTTTTCGTCCATTGAGGAAAATTTCCCACTGCTGCCTC 3576896
Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148
||||||||| | | ||||| | | |||||| ||||||||||||||| | ||| |
Sbjct 3576897 ATGTAGGAGTCGTGGTCATGTCTTGATCCTAGTGTGGCTGATCATCCTCTCATAGCAGCT 3576956
Query 149 ACGG 152
| ||
Sbjct 3576957 ATGG 3576960
>seq359
Length=2044
Score = 84.2 bits (92), Expect = 5e-14
Identities = 71/85 (84%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69
||| || |||||| | | |||||||||||| || |||||||||||||||||| ||
Sbjct 63 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 120
Query 70 TATTCCCCACTGCTGCCTCCCGTAG 94
||||||||||||||||||||||||
Sbjct 121 AATTCCCCACTGCTGCCTCCCGTAG 145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1071610049280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |