Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq3956 226 6e-57 seq74 205 2e-50 seq35238 187 5e-45 seq652 170 4e-40 seq569 168 1e-39 seq86 168 1e-39 seq57 158 3e-36 seq276 105 1e-20 seq49 105 1e-20 seq85 86.0 1e-14 seq359 84.2 5e-14 >seq3956 Length=4762 Score = 226 bits (250), Expect = 6e-57 Identities = 168/194 (87%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| || || | ||| |||||||||| ||||||||||||||| ||||| Sbjct 210 CTTTACAACCCTAAGGCCGTCAT-CACTCACGCGGCAT-GGCTGGATCAGGCTTGCGCCC 153 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||| Sbjct 152 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAA 93 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| |||||||||||||||| || |||||||||| ||||| ||| ||||| | Sbjct 92 TGTGGCTGGCCATCCTCTCAGACCAGCTATCGATCGTCGCCATGGTGGGCCGTTACCCCG 33 Query 181 CCAACTAGCTAATC 194 ||| | |||||||| Sbjct 32 CCATCCAGCTAATC 19 >seq74 Length=10145792 Score = 205 bits (226), Expect = 2e-50 Identities = 145/165 (88%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||| |||||||| || ||||||||||||||||||| || |||||||||||||||||| Sbjct 514431 CACACGGCATTG-CTCCATCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTC 514489 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 514490 CCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 514549 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 193 || |||| |||||||||| ||| | | |||||||||||||||||| Sbjct 514550 ACTGATCATCGCCTTGGTAAGCTAATGCCTCACCAACTAGCTAAT 514594 >seq35238 Length=927 Score = 187 bits (206), Expect = 5e-45 Identities = 157/189 (83%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 187 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 130 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 129 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 70 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 69 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 10 Query 179 CACCAACTA 187 |||||||| Sbjct 9 GACCAACTA 1 >seq652 Length=2384379 Score = 170 bits (188), Expect = 4e-40 Identities = 138/166 (83%), Gaps = 1/166 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||||||| || ||||||||| ||||||||| || ||||| |||||||||||| Sbjct 207544 CACGCGGCATTA-CTCTGTCAGGCTTTTGCCCATTGTGGAAAATTCCACACTGCTGCCTC 207486 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || | ||||| ||| |||||||||| | |||||||| ||||||||||||| || ||| | Sbjct 207485 CCATTGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTTGGATCAGCT 207426 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 || ||| |||||||||| ||| ||| |||||||||||||||||| Sbjct 207425 ACTGATTATCGCCTTGGTAAGCTATTGTCTCACCAACTAGCTAATC 207380 >seq569 Length=4400913 Score = 168 bits (186), Expect = 1e-39 Identities = 128/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||| ||||||||| |||| || ||||||||||||||||||| ||||| || ||| || Sbjct 254557 TCAAGCTTTCGCCTATTGCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCA 254498 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| |||||||| ||||||| |||||| |||||| ||| |||| |||||||||| Sbjct 254497 TGTCTCAGTCCCAGTGTGGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 254438 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGA 197 || ||| ||||||||||||||||||| || Sbjct 254437 AAGTTATTGCCTCACCAACTAGCTAATCAGA 254407 >seq86 Length=7715951 Score = 168 bits (186), Expect = 1e-39 Identities = 140/170 (82%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| |||||| || ||||||||| |||||||| || || ||||||||||||||| Sbjct 6354716 CACGTGGCATTA-CTCCGTCAGGCTTTTGCCCATTGCGAAAAATACCCCACTGCTGCCTC 6354774 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||| || ||| |||||||||||| ||| |||| ||||||||||||||||| || | Sbjct 6354775 CCGTAGGTGTTTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCTCTCAGACTAGCT 6354834 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | |||| |||||||| | || |||||||||| |||||||||||| ||| Sbjct 6354835 ATTGATCATCGCCTTGATAAGTTATTACCTCACTAACTAGCTAATCAGAC 6354884 >seq57 Length=727578 Score = 158 bits (174), Expect = 3e-36 Identities = 137/169 (81%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || || |||||| || ||||||||||||||||||| || ||||| || |||| |||| Sbjct 288428 CATGCAGCATTG-CTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCTCATTGCTACCTC 288370 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || ||||||||||| |||||||||||||| |||||| || |||||||||| || || | Sbjct 288369 CCTTAGGAGTCTGGGCCGTGTCTCAGTTCTAGTGTGGCTTATCATCCTCTTGGATCAACT 288310 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 | |||| ||| |||||| ||| ||| ||| |||||||||||||| || Sbjct 288309 ATTGATCATCGTCTTGGTAAGCTATTGCCTTGCCAACTAGCTAATCAGA 288261 Score = 145 bits (160), Expect = 2e-32 Identities = 141/180 (78%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || ||||||||||||||||||| || |||||| | ||| ||| Sbjct 311822 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGTGAAAAATTCCCTATTGCAAACTC 311764 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 || |||||| | | |||||||||||| | |||||| ||||||||||| | ||||| | Sbjct 311763 CCTAAGGAGTTTAGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTTTTGGACCAACT 311704 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 | |||| ||| |||||| | | || ||||||||||||||||||| || | |||||| Sbjct 311703 ATTGATCATCGTCTTGGTAACCTGTTGCCTCACCAACTAGCTAATCAGATGCAAGCTCAT 311644 >seq276 Length=2778623 Score = 105 bits (116), Expect = 1e-20 Identities = 99/121 (82%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGG-CTTTCGCCCATTGTCCAATATTCC 75 |||||||| | | ||||| |||| |||||| || ||||||||| |||||||| |||| Sbjct 838778 CCTTCTTTG-CTCGCGCGGTATTG-CTGGATTTGGGCTTTCGCCCGTTGTCCAAGATTCT 838835 Query 76 CCACTGCTGC--CTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCAT 133 |||||||||| ||||| | |||||| || | |||||||||| ||| |||| |||||||| Sbjct 838836 CCACTGCTGCTGCTCCCATGGGAGTCCGGGCGGTGTCTCAGTCCCAATGTGGCTGATCAT 838895 Query 134 C 134 | Sbjct 838896 C 838896 >seq49 Length=4798478 Score = 105 bits (116), Expect = 1e-20 Identities = 94/118 (80%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 || ||| |||| ||||| ||| ||| |||||||||| | ||| |||| || ||||| || Sbjct 2020417 CAATGCCGCCTTCCGTATTAGTATGGGCCGTGTCTCAATCCCAATGTGCCTAATCATTCT 2020358 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATC 194 ||| |||||| || |||| || || || | ||| ||| ||||||||||||||||||| Sbjct 2020357 CTCGGACCAGCAACTGATCATCTCCATGATAAGCTATTGCCTCACCAACTAGCTAATC 2020300 >seq85 Length=5226098 Score = 86.0 bits (94), Expect = 1e-14 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||||||||| || ||| | ||||| |||||| || ||| |||||||||||||| Sbjct 3576838 CATGCGGCATTG-CTCCGTCAAGTTTTCGTCCATTGAGGAAAATTTCCCACTGCTGCCTC 3576896 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 ||||||||| | | ||||| | | |||||| ||||||||||||||| | ||| | Sbjct 3576897 ATGTAGGAGTCGTGGTCATGTCTTGATCCTAGTGTGGCTGATCATCCTCTCATAGCAGCT 3576956 Query 149 ACGG 152 | || Sbjct 3576957 ATGG 3576960 >seq359 Length=2044 Score = 84.2 bits (92), Expect = 5e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | |||||||||||| || |||||||||||||||||| || Sbjct 63 CCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAA 120 Query 70 TATTCCCCACTGCTGCCTCCCGTAG 94 |||||||||||||||||||||||| Sbjct 121 AATTCCCCACTGCTGCCTCCCGTAG 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071610049280