Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3956 313 6e-83 seq2764 226 7e-57 seq74 205 2e-50 seq24 205 2e-50 seq569 168 2e-39 seq77 116 9e-24 seq33854 102 2e-19 seq4891 91.5 4e-16 seq23461 84.2 5e-14 seq14 80.6 7e-13 >seq3956 Length=4762 Score = 313 bits (346), Expect = 6e-83 Identities = 321/403 (80%), Gaps = 21/403 (5%) Strand=Plus/Minus Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87 |||||||||| | | ||||||||||||||| || |||||| ||||| |||||||| Sbjct 2707 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGCGT-GTTACCGCACCTT-CAACCTGC 2650 Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGA-CGCCCTAGTA 145 ||| || |||||| || ||||| ||||||| | || ||| || | |||||| | Sbjct 2649 TCAT-GGCTAGATCACCGGGTTT-CGGGTCTGAT--CCGTCGAACTCAAGCGCCCTCTTC 2594 Query 146 AGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACT-GAAA-AT-AA 201 ||||||||||| |||| ||||||| ||||| | ||||||| | || || | || || Sbjct 2593 AGACTCGCTTT-CGCTGCGCCTCCACCTATCGGCTTAAGCT----CGCTCGACACATCAA 2539 Query 202 GTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG----TGGGCTCCCACT 257 ||||||||||||||||||||||||||||| |||| ||| | | ||| |||||||| Sbjct 2538 GTCGCTGACCCATTATACAAAAGGTACGCGGTCAGCCAGAACGGATCTTGGCCTCCCACT 2479 Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317 | ||||| | || ||||||||||| || ||||||||||||| |||||| |||||| ||| Sbjct 2478 GTTTGTAGGTATCCGGTTTCAGGAACTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCT 2419 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||||||||||| |||||||||||||| | || |||| |||| ||||||||||||| Sbjct 2418 TTCCCTCACGGTACTGGTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGATGGT 2359 Query 378 CCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||| |||||||| | ||||||| ||| |||||||| Sbjct 2358 CCCCCCATGTTCAGACAGGATGTCTCGTGTCCCGCCCTACTCG 2316 >seq2764 Length=4463 Score = 226 bits (250), Expect = 7e-57 Identities = 310/415 (75%), Gaps = 16/415 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 3094 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3038 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | || Sbjct 3037 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 2982 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 2981 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 2924 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246 ||||||| || |||||| | | |||| | ||| ||| |||| |||| | | || Sbjct 2923 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 2867 Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | | |||||||||||| || |||||||||| | ||||||||||||||| | |||| Sbjct 2866 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 2808 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||||||| Sbjct 2807 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 2748 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| | | |||||| | ||||| || || | ||||| || | ||||||| Sbjct 2747 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 2693 >seq74 Length=10145792 Score = 205 bits (226), Expect = 2e-50 Identities = 306/417 (73%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 510121 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 510177 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 510178 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGATT-CGGGTCCATAAGC-AGT 510233 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||| ||||||||||| |||| | ||| |||| | Sbjct 510234 GACAATT-GCCCTATGAAGACTCG-TTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAA 510291 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC---CCAACAA 243 ||||||| || |||||| ||| |||| | ||| ||| || |||| ||| || Sbjct 510292 -GCCACTGCCTATGAGTCGCCGACTCATTCTTCAACAGGCACATGGTCAGAGTCCAGTAA 510350 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | || ||||| |||| || |||||||||| | |||||||||||||| | || Sbjct 510351 TCTC--CTTCCACTACTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCTGATG-GG 510407 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 |||||||||| || |||||||||||||||| ||| |||| ||||| ||| ||||||||| Sbjct 510408 GGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAG 510467 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| | | |||||| | ||||| ||| || | ||||| || | ||||||| Sbjct 510468 CCTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGCCCCATACTACTCG 510524 >seq24 Length=10012559 Score = 205 bits (226), Expect = 2e-50 Identities = 305/416 (73%), Gaps = 15/416 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| | Sbjct 3991587 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3991643 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 3991644 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 3991699 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 3991700 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 3991757 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244 ||||||| || |||||| | | |||| | ||| ||| |||| || | | | | Sbjct 3991758 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTAGAGTCCTAGTA 3991816 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||||||| || |||||||||| | ||||||||||||||| | ||| Sbjct 3991817 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 3991875 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| || |||||||||| ||||| ||| |||| ||||| ||| |||||||||| Sbjct 3991876 GTTCTTTTCACCCTTCCCTCACGATACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 3991935 Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| | | |||||| | ||||| || || | | ||| || | ||||||| Sbjct 3991936 CTTGTAAGGTGGTCCTTGCTGATTCACACGGGATTCCACATGCCCCATGCTACTCG 3991991 >seq569 Length=4400913 Score = 168 bits (186), Expect = 2e-39 Identities = 272/374 (73%), Gaps = 14/374 (4%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||||| || |||||| |||||||||||| |||||| ||||| | Sbjct 258873 CCACAACTCAT-CCGCTAA-TTCTTCAACATTAGTCGGTTCGGACCTCCACTTAGTT-TC 258817 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 | |||||||| || |||| ||| ||||| ||| ||| | || |||||| || | || Sbjct 258816 ATCCAACCTT-CATCCTGGTCAT-GGATAAATCACCCAGGTT-CGGGTCCATAAGC-AGT 258761 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-TTCGGTTAAGCTTT 187 ||| | |||||| |||||| |||| |||||| |||| | ||| |||| | Sbjct 258760 GACAATT-GCCCTATGAAGACTTACTTT-CGCTACTACTCCTATGGTTCCCTTAACCAA- 258704 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--AG 245 ||||||| || |||||||| | |||| | ||| ||| | || || | | | || Sbjct 258703 GCCACTGCCTATGAGTCGCTGGCTCATTCTTCAATAGGCATGCGGTTAGAGTCCTAGTAG 258644 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 | |||||||||||| || |||||||||| | ||||||| |||| || | ||| Sbjct 258643 TCTTCTCCCACTGCTTAGGAGCTTACGGTTTCATGTTCTATTTTACTCTCCGATGGGGGT 258584 Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365 |||||| | ||||||||||||||||||| ||| | || | ||| || ||||||||||| Sbjct 258583 TTCTTT-CACCTTTCCCTCACGGTACTACTTCGCAATGGATCACCTAGGAGTATTTAGCC 258525 Query 366 TTGGAGGATGGTCC 379 ||| | | |||||| Sbjct 258524 TTGCAAGGTGGTCC 258511 >seq77 Length=8408033 Score = 116 bits (128), Expect = 9e-24 Identities = 116/149 (78%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331 || |||| | ||||||||||||||| | |||||||||||| || |||||||||||||| Sbjct 2152214 GGATTCATGTTCTATTTCACTCCCCAATG-GGGGTTCTTTTCACCCTTCCCTCACGGTAC 2152156 Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 391 || ||| |||| ||||| ||| |||||||||||||| | | |||||| | ||||| Sbjct 2152155 TACTTCGCTATGGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCAC 2152096 Query 392 ACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 || || | ||||| || | ||||||| Sbjct 2152095 ACGGGATTCCACGTGCCCCATGCTACTCG 2152067 >seq33854 Length=1984 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 1318 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 1376 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 1377 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 1436 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 1437 GTGGTCCCCC 1446 >seq4891 Length=3437377 Score = 91.5 bits (100), Expect = 4e-16 Identities = 111/150 (74%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| | |||||| | || ||||||| | ||||||||||||| | |||||||| Sbjct 1166203 CTCCGATTGCTTGGGAGTTTATGGTTTCATGTTCTATTTCACTCCTTGGTG-GGGGTTCT 1166261 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 |||| || ||| |||||| ||||| ||| | ||| |||| ||| || || |||||||| Sbjct 1166262 TTTCACCATTCTCTCACGATACTACTTCGCCATCAGTCATTCAAGAGCATGTAGCCTTGC 1166321 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTT 399 | | || ||| | |||||| ||||| || Sbjct 1166322 AAGGTGATCCTTACTTATTCACACAAAATT 1166351 >seq23461 Length=104 Score = 84.2 bits (92), Expect = 5e-14 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 ||||| || |||||||||||||||| ||| |||| ||||| |||| |||||||||||||| Sbjct 1 TTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACTCAGGAGTATTTAGCCTTG 60 Query 369 GAGGATGGTCC 379 | | |||||| Sbjct 61 TAAGGTGGTCC 71 >seq14 Length=5878743 Score = 80.6 bits (88), Expect = 7e-13 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||| ||||| | | ||| ||||||| ||||| ||| |||| ||||| |||| ||||||| Sbjct 313080 GGGGCTCTTTACACTTTTTCCTCACGATACTACTTCGCTATAGGTCACTCAGGAGTATTT 313139 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| ||||| ||| || | | ||| || | ||||||| Sbjct 313140 AGCCTTGCAAGGTGGTCCTTGTTGATTCACACAGGATTCCACATGCCCCATGCTACTCG 313198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241148355584