Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001291.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 313 6e-83
seq2764 226 7e-57
seq74 205 2e-50
seq24 205 2e-50
seq569 168 2e-39
seq77 116 9e-24
seq33854 102 2e-19
seq4891 91.5 4e-16
seq23461 84.2 5e-14
seq14 80.6 7e-13
>seq3956
Length=4762
Score = 313 bits (346), Expect = 6e-83
Identities = 321/403 (80%), Gaps = 21/403 (5%)
Strand=Plus/Minus
Query 28 CTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGC 87
|||||||||| | | ||||||||||||||| || |||||| ||||| ||||||||
Sbjct 2707 CTTTTTCAACAGACACCCGTTCGGTCCTCCAGTGCGT-GTTACCGCACCTT-CAACCTGC 2650
Query 88 CCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGA-CTAGA-CGCCCTAGTA 145
||| || |||||| || ||||| ||||||| | || ||| || | |||||| |
Sbjct 2649 TCAT-GGCTAGATCACCGGGTTT-CGGGTCTGAT--CCGTCGAACTCAAGCGCCCTCTTC 2594
Query 146 AGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTTGCCACT-GAAA-AT-AA 201
||||||||||| |||| ||||||| ||||| | ||||||| | || || | || ||
Sbjct 2593 AGACTCGCTTT-CGCTGCGCCTCCACCTATCGGCTTAAGCT----CGCTCGACACATCAA 2539
Query 202 GTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAG----TGGGCTCCCACT 257
||||||||||||||||||||||||||||| |||| ||| | | ||| ||||||||
Sbjct 2538 GTCGCTGACCCATTATACAAAAGGTACGCGGTCAGCCAGAACGGATCTTGGCCTCCCACT 2479
Query 258 GCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCT 317
| ||||| | || ||||||||||| || ||||||||||||| |||||| |||||| |||
Sbjct 2478 GTTTGTAGGTATCCGGTTTCAGGAACTGTTTCACTCCCCTCGTCGGGGTGCTTTTCACCT 2419
Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377
||||||||||||||| |||||||||||||| | || |||| |||| |||||||||||||
Sbjct 2418 TTCCCTCACGGTACTGGTTCACTATCGGTCGCTGAGGAGTACTTAGGCTTGGAGGATGGT 2359
Query 378 CCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||||||| |||||||| | ||||||| ||| ||||||||
Sbjct 2358 CCCCCCATGTTCAGACAGGATGTCTCGTGTCCCGCCCTACTCG 2316
>seq2764
Length=4463
Score = 226 bits (250), Expect = 7e-57
Identities = 310/415 (75%), Gaps = 16/415 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| |
Sbjct 3094 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3038
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||||| ||||||| ||| | || |||||| || | ||
Sbjct 3037 ACCCAAGCTT-CATCCTGGTCATAG-ATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 2982
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 2981 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 2924
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGT 246
||||||| || |||||| | | |||| | ||| ||| |||| |||| | | ||
Sbjct 2923 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--AGCCCAGG 2867
Query 247 GGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| | |||||||||||| || |||||||||| | ||||||||||||||| | ||||
Sbjct 2866 GCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGGG 2808
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||||| || |||||||||||||||| ||| |||||||||| ||| |||||||||||
Sbjct 2807 TTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCC 2748
Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||| | | |||||| | ||||| || || | ||||| || | |||||||
Sbjct 2747 TTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCG 2693
>seq74
Length=10145792
Score = 205 bits (226), Expect = 2e-50
Identities = 306/417 (73%), Gaps = 18/417 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 510121 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 510177
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 510178 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGATT-CGGGTCCATAAGC-AGT 510233
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||| ||||||||||| |||| | ||| |||| |
Sbjct 510234 GACAATT-GCCCTATGAAGACTCG-TTTTCGCTACGGCTCCGGTGGGTTCCCTTAACCAA 510291
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC---CCAACAA 243
||||||| || |||||| ||| |||| | ||| ||| || |||| ||| ||
Sbjct 510292 -GCCACTGCCTATGAGTCGCCGACTCATTCTTCAACAGGCACATGGTCAGAGTCCAGTAA 510350
Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303
| || ||||| |||| || |||||||||| | |||||||||||||| | ||
Sbjct 510351 TCTC--CTTCCACTACTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCTGATG-GG 510407
Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363
|||||||||| || |||||||||||||||| ||| |||| ||||| ||| |||||||||
Sbjct 510408 GGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACCCAGGAGTATTTAG 510467
Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||| | | |||||| | ||||| ||| || | ||||| || | |||||||
Sbjct 510468 CCTTGCAAGGTGGTCCTTGCTGATTCACACAGGATTCCACGTGCCCCATACTACTCG 510524
>seq24
Length=10012559
Score = 205 bits (226), Expect = 2e-50
Identities = 305/416 (73%), Gaps = 15/416 (4%)
Strand=Plus/Plus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||| | || |||||| ||||||||||| |||||| ||||| |
Sbjct 3991587 CCACAACTCAT-CCGCTGA-TTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 3991643
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
|||||| ||| || |||| ||| ||||||||| ||| | || |||||| || | ||
Sbjct 3991644 ACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 3991699
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186
||| | |||||| |||||||||||| ||||||| |||| | ||| |||| |
Sbjct 3991700 GACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCTTAACCAA 3991757
Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--A 244
||||||| || |||||| | | |||| | ||| ||| |||| || | | | |
Sbjct 3991758 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTTAGAGTCCTAGTA 3991816
Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304
|| ||||||||||||| || |||||||||| | ||||||||||||||| | |||
Sbjct 3991817 GTCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATG-GGG 3991875
Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364
||||||||| || |||||||||| ||||| ||| |||| ||||| ||| ||||||||||
Sbjct 3991876 GTTCTTTTCACCCTTCCCTCACGATACTACTTCGCTATGGGTCACCCAGGAGTATTTAGC 3991935
Query 365 CTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|||| | | |||||| | ||||| || || | | ||| || | |||||||
Sbjct 3991936 CTTGTAAGGTGGTCCTTGCTGATTCACACGGGATTCCACATGCCCCATGCTACTCG 3991991
>seq569
Length=4400913
Score = 168 bits (186), Expect = 2e-39
Identities = 272/374 (73%), Gaps = 14/374 (4%)
Strand=Plus/Minus
Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68
||||| |||| ||||||| || |||||| |||||||||||| |||||| ||||| |
Sbjct 258873 CCACAACTCAT-CCGCTAA-TTCTTCAACATTAGTCGGTTCGGACCTCCACTTAGTT-TC 258817
Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128
| |||||||| || |||| ||| ||||| ||| ||| | || |||||| || | ||
Sbjct 258816 ATCCAACCTT-CATCCTGGTCAT-GGATAAATCACCCAGGTT-CGGGTCCATAAGC-AGT 258761
Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA-TTCGGTTAAGCTTT 187
||| | |||||| |||||| |||| |||||| |||| | ||| |||| |
Sbjct 258760 GACAATT-GCCCTATGAAGACTTACTTT-CGCTACTACTCCTATGGTTCCCTTAACCAA- 258704
Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA--AG 245
||||||| || |||||||| | |||| | ||| ||| | || || | | | ||
Sbjct 258703 GCCACTGCCTATGAGTCGCTGGCTCATTCTTCAATAGGCATGCGGTTAGAGTCCTAGTAG 258644
Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305
| |||||||||||| || |||||||||| | ||||||| |||| || | |||
Sbjct 258643 TCTTCTCCCACTGCTTAGGAGCTTACGGTTTCATGTTCTATTTTACTCTCCGATGGGGGT 258584
Query 306 TTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCC 365
|||||| | ||||||||||||||||||| ||| | || | ||| || |||||||||||
Sbjct 258583 TTCTTT-CACCTTTCCCTCACGGTACTACTTCGCAATGGATCACCTAGGAGTATTTAGCC 258525
Query 366 TTGGAGGATGGTCC 379
||| | | ||||||
Sbjct 258524 TTGCAAGGTGGTCC 258511
>seq77
Length=8408033
Score = 116 bits (128), Expect = 9e-24
Identities = 116/149 (78%), Gaps = 1/149 (1%)
Strand=Plus/Minus
Query 272 GGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTAC 331
|| |||| | ||||||||||||||| | |||||||||||| || ||||||||||||||
Sbjct 2152214 GGATTCATGTTCTATTTCACTCCCCAATG-GGGGTTCTTTTCACCCTTCCCTCACGGTAC 2152156
Query 332 TAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAG 391
|| ||| |||| ||||| ||| |||||||||||||| | | |||||| | |||||
Sbjct 2152155 TACTTCGCTATGGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCAC 2152096
Query 392 ACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
|| || | ||||| || | |||||||
Sbjct 2152095 ACGGGATTCCACGTGCCCCATGCTACTCG 2152067
>seq33854
Length=1984
Score = 102 bits (112), Expect = 2e-19
Identities = 102/130 (78%), Gaps = 3/130 (2%)
Strand=Plus/Plus
Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312
|||| |||| ||||| | | ||||| ||| ||| ||||||| | ||||||||||
Sbjct 1318 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 1376
Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372
| |||||||||||||||||| || | |||||||||| | || | || |||| ||| ||||
Sbjct 1377 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 1436
Query 373 ATGGTCCCCC 382
|||||||||
Sbjct 1437 GTGGTCCCCC 1446
>seq4891
Length=3437377
Score = 91.5 bits (100), Expect = 4e-16
Identities = 111/150 (74%), Gaps = 1/150 (1%)
Strand=Plus/Plus
Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309
|||| | |||||| | || ||||||| | ||||||||||||| | ||||||||
Sbjct 1166203 CTCCGATTGCTTGGGAGTTTATGGTTTCATGTTCTATTTCACTCCTTGGTG-GGGGTTCT 1166261
Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369
|||| || ||| |||||| ||||| ||| | ||| |||| ||| || || ||||||||
Sbjct 1166262 TTTCACCATTCTCTCACGATACTACTTCGCCATCAGTCATTCAAGAGCATGTAGCCTTGC 1166321
Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTT 399
| | || ||| | |||||| ||||| ||
Sbjct 1166322 AAGGTGATCCTTACTTATTCACACAAAATT 1166351
>seq23461
Length=104
Score = 84.2 bits (92), Expect = 5e-14
Identities = 61/71 (86%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368
||||| || |||||||||||||||| ||| |||| ||||| |||| ||||||||||||||
Sbjct 1 TTTTCACCCTTCCCTCACGGTACTACTTCGCTATGGGTCACTCAGGAGTATTTAGCCTTG 60
Query 369 GAGGATGGTCC 379
| | ||||||
Sbjct 61 TAAGGTGGTCC 71
>seq14
Length=5878743
Score = 80.6 bits (88), Expect = 7e-13
Identities = 89/119 (75%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361
|||| ||||| | | ||| ||||||| ||||| ||| |||| ||||| |||| |||||||
Sbjct 313080 GGGGCTCTTTACACTTTTTCCTCACGATACTACTTCGCTATAGGTCACTCAGGAGTATTT 313139
Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420
||||||| | | |||||| ||||| ||| || | | ||| || | |||||||
Sbjct 313140 AGCCTTGCAAGGTGGTCCTTGTTGATTCACACAGGATTCCACATGCCCCATGCTACTCG 313198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1241148355584
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