Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq74 194 3e-47 seq3956 181 2e-43 seq569 158 2e-36 seq86 150 4e-34 seq652 143 5e-32 seq35238 125 1e-26 seq57 116 7e-24 seq49 87.8 4e-15 seq276 84.2 4e-14 seq359 77.0 6e-12 >seq74 Length=10145792 Score = 194 bits (214), Expect = 3e-47 Identities = 228/305 (75%), Gaps = 19/305 (6%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||||| ||| Sbjct 514436 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCATAG 514495 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 514496 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 514555 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||| | ||||||||||| ||||| | ||||||||| || | Sbjct 514556 CATCGCCTTGGTAAGCTAATGCCTCACCAACTAGCTAATTAGACGCGAGCCCCTCCTCGG 514615 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | | || | ||| || || Sbjct 514616 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TAGGGGGTGTT-GCAGC 514658 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| || || |||||||| || ||| |||||||||||||||| Sbjct 514659 CGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 514717 Query 300 CCACT 304 ||||| Sbjct 514718 CCACT 514722 >seq3956 Length=4762 Score = 181 bits (200), Expect = 2e-43 Identities = 147/178 (83%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| || | |||||||| |||||| ||||||||||||||||||||| Sbjct 178 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 119 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| ||||||||||||||||||||||||||| | || |||||||| || |||| |||| Sbjct 118 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGGCCATCCTCTCAGACCAGCTATCGAT 59 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178 ||||| | |||||||| ||| | | ||| | | ||||||| |||| ||| ||| || Sbjct 58 CGTCGCCATGGTGGGCCGTTACCCCGCCATCCAGCTAATCGAACGCGGGCCAATCCTT 1 >seq569 Length=4400913 Score = 158 bits (174), Expect = 2e-36 Identities = 211/291 (73%), Gaps = 18/291 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||| | |||| || |||| | || || |||||||||||||||| ||||| || |||||| Sbjct 254557 TCAAGCTTTCGCCTATTGCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCA 254498 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| |||||| Sbjct 254497 TGTCTCAGTCCCAGTGTGGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 254438 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 | |||| ||||||||||| |||||| | |||||||| || | || ||| || Sbjct 254437 AAGTTATTGCCTCACCAACTAGCTAATCAGATGCGAGCCCCTCCTCGGGCAGATTCCTCC 254378 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| ||||| | | || | ||||||||| | |||||| Sbjct 254377 TT------------TTGC--TCCTCAGCC--TAGGGGGTATTAGCAGCCATTTCCAGCTA 254334 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCA 302 || |||| ||| || || ||||| || ||| ||||||||||||| ||||| Sbjct 254333 TTGTTCCCCTCCCAAGGGTAGGTT-CTTACGCGTTACTCACCCGTTCGCCA 254284 >seq86 Length=7715951 Score = 150 bits (166), Expect = 4e-34 Identities = 128/158 (81%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| ||| ||||||| | || || |||||||||||||||||||||| || ||||||| Sbjct 6354733 TCAGGCTTTTGCCCATTGCGAAAAATACCCCACTGCTGCCTCCCGTAGGTGTTTGGGCCG 6354792 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||||||||| | ||| |||||||| | |||| |||| ||| |||| | Sbjct 6354793 TGTCTCAGTCCCAATGTGGTTGATCATCCTCTCAGACTAGCTATTGATCATCGCCTTGAT 6354852 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170 | ||||| ||||| ||||| |||||| | | ||||| Sbjct 6354853 AAGTTATTACCTCACTAACTAGCTAATCAGACACGAGC 6354890 >seq652 Length=2384379 Score = 143 bits (158), Expect = 5e-32 Identities = 203/281 (72%), Gaps = 17/281 (6%) Strand=Plus/Minus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| ||| ||||||||| || || || |||||||||||||| | ||||| ||||||| Sbjct 207527 TCAGGCTTTTGCCCATTGTGGAAAATTCCACACTGCTGCCTCCCATTGGAGTTTGGGCCG 207468 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||| ||||| |||||| | ||| ||||| | | ||||| ||| ||| |||||| Sbjct 207467 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTTGGATCAGCTACTGATTATCGCCTTGGT 207408 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192 |||||| |||||||||||| |||||| || ||| || || | ||| || || | Sbjct 207407 AAGCTATTGTCTCACCAACTAGCTAATCAAACGTGAGGCCCTCCT--CGCGCGAATTCCT 207350 Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252 | ||| ||||| | | |||| |||||||||| |||||| | || Sbjct 207349 ---------CCTTTTGC--TCCTCAGCC--TATGGGGTATTAGCGGCCGTTTCTAGCTGT 207303 Query 253 TATT-CCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCAC 292 | || || ||| || || ||||| |||| | ||||||||| Sbjct 207302 TGTTCCCCCTCCCAAGGGTAGGTT-CTCATGCGTTACTCAC 207263 >seq35238 Length=927 Score = 125 bits (138), Expect = 1e-26 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 147 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 88 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 87 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 28 Query 127 CTTGGTGGGCTATTATCTCACCAACTA 153 |||||| || ||| || |||||||| Sbjct 27 CTTGGTCAGCCTTTACCTGACCAACTA 1 >seq57 Length=727578 Score = 116 bits (128), Expect = 7e-24 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| |||||||| || || || || |||| |||||| ||||||||| Sbjct 288417 GCTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCTCATTGCTACCTCCCTTAGGAGTCT 288358 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||| | | |||||| ||| ||||| | | ||| |||| ||| Sbjct 288357 GGGCCGTGTCTCAGTTCTAGTGTGGCTTATCATCCTCTTGGATCAACTATTGATCATCGT 288298 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||||| |||||| || ||||||| |||||| Sbjct 288297 CTTGGTAAGCTATTGCCTTGCCAACTAGCTAATC 288264 Score = 111 bits (122), Expect = 3e-22 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||||| || || ||| | ||| ||||| || Sbjct 311817 GGCATTGCTCCGTCAGGCTTTCGCCCATTGTGAAAAATTCCCTATTGCAAACTCCCTAAG 311758 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||| | |||||||||||||||| | |||||| | ||| ||| | | || ||| ||| Sbjct 311757 GAGTTTAGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTTTTGGACCAACTATTGAT 311698 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCAT 174 | ||| |||||| || || ||||||||||| |||||| | || ||| ||| Sbjct 311697 CATCGTCTTGGTAACCTGTTGCCTCACCAACTAGCTAATCAGATGCAAGCTCAT 311644 >seq49 Length=4798478 Score = 87.8 bits (96), Expect = 4e-15 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 43 CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCT 102 || ||| |||| ||||| ||| |||||||||||||| |||||||||| | ||| || Sbjct 2020417 CAATGCCGCCTTCCGTATTAGTATGGGCCGTGTCTCAATCCCAATGTGCCTAATCATTCT 2020358 Query 103 CTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 ||| | || || || |||| || | || | |||||| ||||||||||| |||||| Sbjct 2020357 CTCGGACCAGCAACTGATCATCTCCATGATAAGCTATTGCCTCACCAACTAGCTAATC 2020300 >seq276 Length=2778623 Score = 84.2 bits (92), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 7 GCTGCATCAGGG-TTTCCCCCATTGTGCAATATCCCCCACTGCTGC--CTCCCGTAGGAG 63 |||| || ||| |||| ||| |||| ||| || | |||||||||| ||||| | |||| Sbjct 838800 GCTGGATTTGGGCTTTCGCCCGTTGTCCAAGATTCTCCACTGCTGCTGCTCCCATGGGAG 838859 Query 64 TCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 || |||| ||||||||||||||||||||| | ||| Sbjct 838860 TCCGGGCGGTGTCTCAGTCCCAATGTGGCTGATCA 838894 >seq359 Length=2044 Score = 77.0 bits (84), Expect = 6e-12 Identities = 121/171 (71%), Gaps = 18/171 (11%) Strand=Plus/Plus Query 135 GCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG-ATAAATCTTT 193 |||||| ||||||||||| |||||| | ||||||||| || | ||| || || || Sbjct 158 GCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTT 217 Query 194 GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTT 253 ||| ||||| | | || | ||||||||| |||||||| ||| Sbjct 218 T------------TGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTT 261 Query 254 ATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 |||| ||| || |||||||| || ||| ||||||||||||||||||||| Sbjct 262 GTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998036822016