Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq74 194 3e-47
seq3956 181 2e-43
seq569 158 2e-36
seq86 150 4e-34
seq652 143 5e-32
seq35238 125 1e-26
seq57 116 7e-24
seq49 87.8 4e-15
seq276 84.2 4e-14
seq359 77.0 6e-12
>seq74
Length=10145792
Score = 194 bits (214), Expect = 3e-47
Identities = 228/305 (75%), Gaps = 19/305 (6%)
Strand=Plus/Plus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| ||||||| |||| ||||||| | || || ||||||||||||||||| |||
Sbjct 514436 GGCATTGCTCCATCAGGCTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCATAG 514495
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| |||
Sbjct 514496 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 514555
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| ||| |||||| |||| | ||||||||||| ||||| | ||||||||| || |
Sbjct 514556 CATCGCCTTGGTAAGCTAATGCCTCACCAACTAGCTAATTAGACGCGAGCCCCTCCTCGG 514615
Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239
|| ||| || || ||| ||||| | | || | ||| || ||
Sbjct 514616 GCGGATTCCTCCTT------------TTGC--TCCTCAGCC--TAGGGGGTGTT-GCAGC 514658
Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299
|||||||| ||| |||| || || |||||||| || ||| ||||||||||||||||
Sbjct 514659 CGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 514717
Query 300 CCACT 304
|||||
Sbjct 514718 CCACT 514722
>seq3956
Length=4762
Score = 181 bits (200), Expect = 2e-43
Identities = 147/178 (83%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | |||| |||||| || | |||||||| |||||| |||||||||||||||||||||
Sbjct 178 GGCATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAG 119
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| ||||||||||||||||||||||||||| | || |||||||| || |||| ||||
Sbjct 118 GAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGGCCATCCTCTCAGACCAGCTATCGAT 59
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTT 178
||||| | |||||||| ||| | | ||| | | ||||||| |||| ||| ||| ||
Sbjct 58 CGTCGCCATGGTGGGCCGTTACCCCGCCATCCAGCTAATCGAACGCGGGCCAATCCTT 1
>seq569
Length=4400913
Score = 158 bits (174), Expect = 2e-36
Identities = 211/291 (73%), Gaps = 18/291 (6%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||| | |||| || |||| | || || |||||||||||||||| ||||| || ||||||
Sbjct 254557 TCAAGCTTTCGCCTATTGCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCA 254498
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| ||||||
Sbjct 254497 TGTCTCAGTCCCAGTGTGGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 254438
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191
| |||| ||||||||||| |||||| | |||||||| || | || ||| ||
Sbjct 254437 AAGTTATTGCCTCACCAACTAGCTAATCAGATGCGAGCCCCTCCTCGGGCAGATTCCTCC 254378
Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251
|| ||| ||||| | | || | ||||||||| | ||||||
Sbjct 254377 TT------------TTGC--TCCTCAGCC--TAGGGGGTATTAGCAGCCATTTCCAGCTA 254334
Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCA 302
|| |||| ||| || || ||||| || ||| ||||||||||||| |||||
Sbjct 254333 TTGTTCCCCTCCCAAGGGTAGGTT-CTTACGCGTTACTCACCCGTTCGCCA 254284
>seq86
Length=7715951
Score = 150 bits (166), Expect = 4e-34
Identities = 128/158 (81%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| ||| ||||||| | || || |||||||||||||||||||||| || |||||||
Sbjct 6354733 TCAGGCTTTTGCCCATTGCGAAAAATACCCCACTGCTGCCTCCCGTAGGTGTTTGGGCCG 6354792
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||||||||||||||| | ||| |||||||| | |||| |||| ||| |||| |
Sbjct 6354793 TGTCTCAGTCCCAATGTGGTTGATCATCCTCTCAGACTAGCTATTGATCATCGCCTTGAT 6354852
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGC 170
| ||||| ||||| ||||| |||||| | | |||||
Sbjct 6354853 AAGTTATTACCTCACTAACTAGCTAATCAGACACGAGC 6354890
>seq652
Length=2384379
Score = 143 bits (158), Expect = 5e-32
Identities = 203/281 (72%), Gaps = 17/281 (6%)
Strand=Plus/Minus
Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72
||||| ||| ||||||||| || || || |||||||||||||| | ||||| |||||||
Sbjct 207527 TCAGGCTTTTGCCCATTGTGGAAAATTCCACACTGCTGCCTCCCATTGGAGTTTGGGCCG 207468
Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132
||||||| ||||| |||||| | ||| ||||| | | ||||| ||| ||| ||||||
Sbjct 207467 TGTCTCAATCCCAGTGTGGCTGATCATCCTCTTGGATCAGCTACTGATTATCGCCTTGGT 207408
Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTT 192
|||||| |||||||||||| |||||| || ||| || || | ||| || || |
Sbjct 207407 AAGCTATTGTCTCACCAACTAGCTAATCAAACGTGAGGCCCTCCT--CGCGCGAATTCCT 207350
Query 193 TGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGT 252
| ||| ||||| | | |||| |||||||||| |||||| | ||
Sbjct 207349 ---------CCTTTTGC--TCCTCAGCC--TATGGGGTATTAGCGGCCGTTTCTAGCTGT 207303
Query 253 TATT-CCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCAC 292
| || || ||| || || ||||| |||| | |||||||||
Sbjct 207302 TGTTCCCCCTCCCAAGGGTAGGTT-CTCATGCGTTACTCAC 207263
>seq35238
Length=927
Score = 125 bits (138), Expect = 1e-26
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 147 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 88
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 87 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 28
Query 127 CTTGGTGGGCTATTATCTCACCAACTA 153
|||||| || ||| || ||||||||
Sbjct 27 CTTGGTCAGCCTTTACCTGACCAACTA 1
>seq57
Length=727578
Score = 116 bits (128), Expect = 7e-24
Identities = 118/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||||| |||| |||||||| || || || || |||| |||||| |||||||||
Sbjct 288417 GCTCCGTCAGGCTTTCGCCCATTGTAGAAAATTCCTCATTGCTACCTCCCTTAGGAGTCT 288358
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||| | | |||||| ||| ||||| | | ||| |||| |||
Sbjct 288357 GGGCCGTGTCTCAGTTCTAGTGTGGCTTATCATCCTCTTGGATCAACTATTGATCATCGT 288298
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
|||||| |||||| || ||||||| ||||||
Sbjct 288297 CTTGGTAAGCTATTGCCTTGCCAACTAGCTAATC 288264
Score = 111 bits (122), Expect = 3e-22
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||||| |||| ||||||||| || || ||| | ||| ||||| ||
Sbjct 311817 GGCATTGCTCCGTCAGGCTTTCGCCCATTGTGAAAAATTCCCTATTGCAAACTCCCTAAG 311758
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||| | |||||||||||||||| | |||||| | ||| ||| | | || ||| |||
Sbjct 311757 GAGTTTAGGCCGTGTCTCAGTCCTAGTGTGGCTGATCATCCTTTTGGACCAACTATTGAT 311698
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCAT 174
| ||| |||||| || || ||||||||||| |||||| | || ||| |||
Sbjct 311697 CATCGTCTTGGTAACCTGTTGCCTCACCAACTAGCTAATCAGATGCAAGCTCAT 311644
>seq49
Length=4798478
Score = 87.8 bits (96), Expect = 4e-15
Identities = 90/118 (76%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 43 CACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCT 102
|| ||| |||| ||||| ||| |||||||||||||| |||||||||| | ||| ||
Sbjct 2020417 CAATGCCGCCTTCCGTATTAGTATGGGCCGTGTCTCAATCCCAATGTGCCTAATCATTCT 2020358
Query 103 CTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
||| | || || || |||| || | || | |||||| ||||||||||| ||||||
Sbjct 2020357 CTCGGACCAGCAACTGATCATCTCCATGATAAGCTATTGCCTCACCAACTAGCTAATC 2020300
>seq276
Length=2778623
Score = 84.2 bits (92), Expect = 4e-14
Identities = 77/95 (81%), Gaps = 3/95 (3%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGG-TTTCCCCCATTGTGCAATATCCCCCACTGCTGC--CTCCCGTAGGAG 63
|||| || ||| |||| ||| |||| ||| || | |||||||||| ||||| | ||||
Sbjct 838800 GCTGGATTTGGGCTTTCGCCCGTTGTCCAAGATTCTCCACTGCTGCTGCTCCCATGGGAG 838859
Query 64 TCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98
|| |||| ||||||||||||||||||||| | |||
Sbjct 838860 TCCGGGCGGTGTCTCAGTCCCAATGTGGCTGATCA 838894
>seq359
Length=2044
Score = 77.0 bits (84), Expect = 6e-12
Identities = 121/171 (71%), Gaps = 18/171 (11%)
Strand=Plus/Plus
Query 135 GCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCG-ATAAATCTTT 193
|||||| ||||||||||| |||||| | ||||||||| || | ||| || || ||
Sbjct 158 GCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCCTT 217
Query 194 GGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTT 253
||| ||||| | | || | ||||||||| |||||||| |||
Sbjct 218 T------------TGC--TCCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTT 261
Query 254 ATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304
|||| ||| || |||||||| || ||| |||||||||||||||||||||
Sbjct 262 GTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 998036822016
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