Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq5649 176 5e-42 seq6951 172 7e-41 seq10646 158 1e-36 seq2566 158 1e-36 seq2225 156 5e-36 seq2030 82.4 9e-14 seq1871 80.6 3e-13 seq1165 80.6 3e-13 seq9029 75.2 1e-11 seq650 75.2 1e-11 seq195 75.2 1e-11 seq2690 73.4 5e-11 >seq5649 Length=13326 Score = 176 bits (194), Expect = 5e-42 Identities = 156/189 (83%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 11 AACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGT 70 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| Sbjct 9893 AACCAACAAAATAGGCAGCGACGTCCTATTCTATTATTCCATGCTAATGTATTCGAGCGA 9834 Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCAC-ACC 129 | |||||||||||||||||||||||| |||| ||||||||||||||||| | ||| || Sbjct 9833 AGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGGTTCCCCATCACGCCC 9774 Query 130 AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATG--CAGTACTCGCCGTG 186 | |||| ||||| ||||| ||| ||| | |||| | | | |||||| ||| ||| Sbjct 9773 AGTGAAGGGCAT-GAGGCTCCCCAGAAGGAAAGGCTCAG-ACGGACCAGTACACGCGGTG 9716 Query 187 AGGCGGACC 195 ||||||||| Sbjct 9715 AGGCGGACC 9707 >seq6951 Length=503 Score = 172 bits (190), Expect = 7e-41 Identities = 157/193 (81%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||| Sbjct 245 CTAGAAACCAACAAAATAGAACCACACGTCCTATTCCATTATTCCATGCTAATGTATTCG 186 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||| ||||||||| || |||||| | Sbjct 185 AGCAAATGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCTTGATTCCTCACTA 126 Query 126 C-ACCAATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGT-AATGCAGTACTCGC 182 | ||| |||| |||||| || || |||||| | | || | || | |||||| ||| Sbjct 125 CGCCCAGTGAAGGGCATA-GGATTCCCCAAGAAGAAAGGTTCAGTCGAACCAGTACACGC 67 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 66 GGTGAGGCGGACC 54 >seq10646 Length=592 Score = 158 bits (174), Expect = 1e-36 Identities = 110/124 (89%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| | | ||||||||||||||||||||||||||||||||| Sbjct 189 CTAGAAACCAACAAAATAGAACCTCT-GTCCTATTCTATTATTCCATGCTAATGTATTCG 131 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCA 125 || | |||||||||||||||||||||||| |||||||||||||||||||||| | || Sbjct 130 AGCAAAGGCCTGCTTTGAACACTCTAATTTTTTCAAGGTAAAAGTCCTGGTTCCCCGACA 71 Query 126 CACC 129 |||| Sbjct 70 CACC 67 >seq2566 Length=12546 Score = 158 bits (174), Expect = 1e-36 Identities = 153/193 (79%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCA-CGTCCTATTCTATTATTCCATGCTAATGTATTC 64 ||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct 12288 CTAGAAACCAACAAAATAGAACCACAACGTCCTATTCTATTATTCCATGCTAATGTATTC 12229 Query 65 GGGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGC 124 | || | |||||||||||||||||||||||| |||| ||||||||| || |||||| | Sbjct 12228 GAGCAAATGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCTTGATTCCTCAAC 12169 Query 125 AC-ACCAATGAAGG-CATACGGGCTCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGC 182 || ||| | |||| || || || | | || ||| | | | |||||||||| Sbjct 12168 ACTCCCAGTAAAGGAAATGCGATTTCTCAAGAAGAAAGGCCCAATTGACACAGTACTCGC 12109 Query 183 CGTGAGGCGGACC 195 |||||||||||| Sbjct 12108 GGTGAGGCGGACC 12096 >seq2225 Length=7605 Score = 156 bits (172), Expect = 5e-36 Identities = 152/190 (80%), Gaps = 8/190 (4%) Strand=Plus/Minus Query 11 AACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCGT 70 ||||||||||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct 527 AACCAACAAAATAGGCAGCGACGTCCTATTCTATTATTCCATGCTAATGTATTCGAGCAA 468 Query 71 AAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCAC-ACC 129 | |||||||||||||||||||||||| |||| |||||||||||| |||| | ||| || Sbjct 467 ATGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGTCCTGTTTCCCCAACACGCCC 408 Query 130 AATGAA-GGCATACGGGCTCACCAAGAGGTAGGGCTGGGTAATG---CAGTACTCGCCGT 185 | |||| ||||| || || || ||| | |||| || | |||||| ||| || Sbjct 407 AGTGAAGGGCAT-GAGGTTCCACAGAAGGAAAGGCT--CAAACGGACCAGTACACGCGGT 351 Query 186 GAGGCGGACC 195 |||||||||| Sbjct 350 GAGGCGGACC 341 >seq2030 Length=1036 Score = 82.4 bits (90), Expect = 9e-14 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 415 CCAACACAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 357 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 || |||||||| ||||||||||| |||| |||| ||| Sbjct 356 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAGT 318 >seq1871 Length=3978 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 3180 CCAACACAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 3238 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 3239 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 3276 >seq1165 Length=8953 Score = 80.6 bits (88), Expect = 3e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 385 CCAACACAATAGGATCGAAA-TCCTATGATGTTATCCCATGCTAATGTATCCAGAGCGTA 327 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 326 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 289 >seq9029 Length=255 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 148 CCAACACAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 206 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || | |||||| ||||||||||| |||| |||| || Sbjct 207 GGCTTTCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 244 >seq650 Length=1207 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | ||||| Sbjct 542 CCAACACAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTA 600 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||| | ||||||||||| |||| |||| || Sbjct 601 GGCTTGCTTTAAGCACTCTAATTTCTTCAAAGTAACAG 638 >seq195 Length=1358929 Score = 75.2 bits (82), Expect = 1e-11 Identities = 77/98 (79%), Gaps = 2/98 (2%) Strand=Plus/Minus Query 13 CCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTA 71 |||||| |||||| || | |||||| | |||| |||||||||||||| | | | ||| Sbjct 1294566 CCAACACAATAGGACCGGAA-TCCTATGATGTTATCCCATGCTAATGTATACAGAGTGTA 1294508 Query 72 AGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAG 109 || |||||||| ||||||||||| |||| |||| || Sbjct 1294507 GGCTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACAG 1294470 >seq2690 Length=1481129 Score = 73.4 bits (80), Expect = 5e-11 Identities = 63/77 (82%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 34 TCCTATTCTATTATTCCATGCTAATGTATTCGG-GCGTAAGCCTGCTTTGAACACTCTAA 92 |||||| | |||| |||||||||||||| | | ||||| || |||||||| |||||||| Sbjct 639750 TCCTATGATGTTATCCCATGCTAATGTATACAGAGCGTAGGCTTGCTTTGAGCACTCTAA 639691 Query 93 TTTTCTCAAGGTAAAAG 109 ||| |||| |||| || Sbjct 639690 TTTCTTCAAAGTAACAG 639674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594990255984