Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3956 206 6e-51 seq24 187 6e-45 seq28361 174 4e-41 seq33854 167 5e-39 seq74 158 3e-36 seq652 122 2e-25 seq2764 104 5e-20 seq569 98.7 2e-18 seq78 96.9 8e-18 seq276 93.3 1e-16 seq91 91.5 3e-16 seq1323 80.6 6e-13 >seq3956 Length=4762 Score = 206 bits (228), Expect = 6e-51 Identities = 298/414 (72%), Gaps = 20/414 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||| || |||| | | ||| ||||| || Sbjct 3333 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCGAAGATTAACTTTACG 3274 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGAT-TCCCACC-CGTCACACGCTACTCATGCC 118 | |||||||||||| |||||| ||| | | ||| ||| || |||||||| | Sbjct 3273 CAGGAACCCTTGGACTTTCGGCG-ACGCTGTCTTTCACAGCGTTTGTCGTTACTCATGTC 3215 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGAC--A 176 |||||| |||| | | ||||| | | | | |||| | | ||| ||| | Sbjct 3214 AGCATTCGCACTTCCGATATCTCCAGGATGC---CTCGCGGCTGTCCCTTCACGGACCTA 3158 Query 177 CG--ACGCTCCCCTACC-----CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229 || ||||||| ||||| | | | | | ||| ||||||||| ||| Sbjct 3157 CGGAACGCTCCGCTACCGCTTGCGATCGCTCGCAAACCCAAAGCTTCGGCTCGCGGCTTG 3098 Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCACTC 284 ||||||| ||||| ||||||| | | | |||| ||||||||||| |||||| || Sbjct 3097 AGCCCCGGTACATCTTCGGCGCAGGAACCCTTGTCTAGACCAGTGAGCTGTTACGCTTTC 3038 Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344 ||| ||||||||||||||| ||||||||||||||||||| | | | ||||||||||| Sbjct 3037 TTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTCCCACATCCTTT 2978 Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 |||||| || | | | || ||||||||||||| || |||||| ||||||||||| Sbjct 2977 CCCACTTAGCCGCGAATTGGGGGCCTTAGCTGTTGGTCTGGGTTGTTTCCCTCT 2924 >seq24 Length=10012559 Score = 187 bits (206), Expect = 6e-45 Identities = 294/409 (72%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 3988848 CGACTACGCCGTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3988907 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 3988908 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3988967 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | || ||| ||||| || || | | Sbjct 3988968 ACATTCTCGCTTCCGCTTCG--TCCACCCCTGC-TCTTGCGGGTGCTTC-CCTCTAAGGC 3989023 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 3989024 GGAACGCTCCCCTACCGATGTATTTTGACA---TTCCACAGCTTCGGCAGATCGCTTA-G 3989079 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| | || || | | || || ||||||||||||||||||||||||||| Sbjct 3989080 CCCCGTT-CATCTTTGGTGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 3989138 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||| | ||||| | || | || |||||| ||||| Sbjct 3989139 GGTGGCTGCTTCTAGGCAAACCTCCTAGCTGTCT-CTGTACCCTACCTCCTTTATCACTG 3989197 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 3989198 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 3989246 Score = 187 bits (206), Expect = 6e-45 Identities = 294/409 (72%), Gaps = 19/409 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 3990972 CGACTACGCCGTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3991031 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 3991032 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3991091 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | || ||| ||||| || || | | Sbjct 3991092 ACATTCTCGCTTCCGCTTCG--TCCACCCCTGC-TCTTGCGGGTGCTTC-CCTCTAAGGC 3991147 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | | ||| | ||||||||||||| ||| |||| | Sbjct 3991148 GGAACGCTCCCCTACCGATGTATTTTGACA---TTCCACAGCTTCGGCAGATCGCTTA-G 3991203 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 3991204 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 3991262 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||| ||| ||||| | || | || |||||| ||||| Sbjct 3991263 GGTGGCTGCTTCTAGGCAAACCTCATGGCTGTCT-CTGTACCCTACCTCCTTTATCACTG 3991321 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| | ||||||| ||||||| Sbjct 3991322 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGAGCTGTTTTCCTCTCG 3991370 >seq28361 Length=1991474 Score = 174 bits (192), Expect = 4e-41 Identities = 156/193 (81%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| ||| ||| ||| |||| |||||| | ||| ||||||| | |||| || || Sbjct 604570 CCACAACTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCACTCGATCA 604627 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||||||| |||||| |||| | || |||||||| ||||||| Sbjct 604628 GTGAGCTATTACGCACTCTTTCAAGAATGGCTACTTCTAGGCAAACCTCCTAGTTGTCTC 604687 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||||||| || |||||| ||||||||||||||| ||| Sbjct 604688 TGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGACCTTAGCTGATGATCCGGG 604747 Query 387 CTGTTTCCCTCTC 399 ||||||||||||| Sbjct 604748 CTGTTTCCCTCTC 604760 >seq33854 Length=1984 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 659 GCTTCGGTGAATCACTTGAGCCCGGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 715 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 716 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 775 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 776 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 835 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 836 GTTTCCCTCTCG 847 >seq74 Length=10145792 Score = 158 bits (174), Expect = 3e-36 Identities = 153/194 (79%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||| ||||||||| |||| |||| |||| | | ||| |||| || | | || || || Sbjct 509713 CCATAGCTTCGGCAGATAGCTTA-GCCCTGTT-CATCTTCGGTGCAAGAGCGCTCGATCA 509770 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||||||||||||||| ||||| |||| |||| |||||| | | ||||| Sbjct 509771 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTACTTCTAAGCAAACCTCATAGCTGTCTC 509830 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | || |||||| || |||| ||| |||||||||||||||| ||||| ||| Sbjct 509831 TGCACCCTTACCTCCTTTATCAGTGAGCAGCCATTTAGGGGCCTTAGCTGGTGATCCGGG 509890 Query 387 CTGTTTCCCTCTCG 400 ||||||| |||||| Sbjct 509891 CTGTTTCTCTCTCG 509904 >seq652 Length=2384379 Score = 122 bits (134), Expect = 2e-25 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| || ||||| || ||| ||| | | ||| | | || | || Sbjct 211767 CCACAGCTTCGGCAAATCGCTTAATCCT-GCT-CATCTTTGACGCAAGAGCGATTAATCA 211710 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||| |||||||| |||||| ||| | | |||||||| | | || Sbjct 211709 GTGAGCTATTACGCACTTTTTCAAGGGTGGCTGTTTCTACACAAACCTCCTAGCTACCTC 211650 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 ||| | | || |||||| ||| || || ||||||||| |||||| ||||| ||| Sbjct 211649 TGCACCCCTACCTCCTTTATCACAAAGCAGTCATTTAGGGGCCGTAGCTGGTGATCCGGG 211590 Query 387 CTGTTTCCCTCTCG 400 |||||||||||||| Sbjct 211589 CTGTTTCCCTCTCG 211576 >seq2764 Length=4463 Score = 104 bits (114), Expect = 5e-20 Identities = 202/288 (70%), Gaps = 18/288 (6%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 3653 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3594 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGT-CACACGCTACTCATGCCT 119 ||||||||||| | |||| | | |||||| |||| | || |||||| ||| Sbjct 3593 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3534 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||| | | || | ||| ||||| || || | | Sbjct 3533 ACATTCTCGCTTCCGCTTC--GTCCACCGC-CGCTCGCGCGGTTGCTTC-CCCCTAAGGC 3478 Query 178 G--ACGCTCCCCTACCCAACCA----CACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| ||| || Sbjct 3477 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTT-AG 3422 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACG 279 ||||| | ||| ||||||| | | || || ||||||||||||||| Sbjct 3421 CCCCG-TTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACG 3375 >seq569 Length=4400913 Score = 98.7 bits (108), Expect = 2e-18 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268 ||| |||| | ||| |||| |||||| | ||| ||||| | | || || |||| Sbjct 259279 ACAACTTCAGTAGATCGCTTA-GCCCCGTT-CATCTTCGGCACAAGAGTGCTCGATCAGT 259222 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||||||||||||||||| ||||| |||| | || |||||||| | ||| | Sbjct 259221 GAGCTATTACGCACTCTTTCAAGAGTGGCTACTTCTAGGCAAACCTCCTAACTATCTCTG 259162 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 || | || |||||| ||||||| | ||| |||||||||||| | ||| ||| Sbjct 259161 CACCCATACCTCCTTTATCACTGAGCAGTTATTTAAGGGCCTTAGCTGGTAATCCAAGCT 259102 Query 389 GTTTCCCTCTC 399 ||||||| || Sbjct 259101 ATTTCCCTTTC 259091 >seq78 Length=2934372 Score = 96.9 bits (106), Expect = 8e-18 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||| ||| ||| ||| |||| ||| || | ||| ||||||| | | || | || Sbjct 153639 CCACAACTTAGGCAGATCGCTTA-GCCTCGTT-CATCTTCGGCGCAAGAGCGCTCAATCA 153696 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||| ||||||||||||||| |||| |||||||||| | || || ||| ||| ||||| Sbjct 153697 ATGAGTTATTACGCACTCTTTTAAGGGTGGCTGCTTCTAGGCAAATCTCTTGGCTGTCTC 153756 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTT 371 || | | || |||||| || |||| | || ||||||||||| Sbjct 153757 TACACCCCTACCTCCTTTATCATCGAGTGATCATTTAGGGGCCTT 153801 >seq276 Length=2778623 Score = 93.3 bits (102), Expect = 1e-16 Identities = 235/347 (68%), Gaps = 18/347 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || || |||| |||||| | ||||||||| | || ||| | || Sbjct 1911985 CGACTACGTCTTTCAGCCTGATCTTAGGCCTTGACTCACCCTTCGTGGATGAACCTTGCC 1911926 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | || | | | |||||| |||| | || |||||| ||| Sbjct 1911925 GAGGAACCCTTAGGCTTTCAGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCA 1911866 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| ||| | |||| | || | ||| ||||| || |||| | Sbjct 1911865 ACATTCTCGCTTCCGCTTCA--TTCACCCCTGC-TCTCGCGGGTGCTTC-CCTCTGAGGC 1911810 Query 178 GA--CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 || ||||||||||| | | ||| | ||| |||||| || || |||| | Sbjct 1911809 GAAACGCTCCCCTACTGATGTATTTTGACA---TCCCATAGCTTCAGCAAATCGCTTA-G 1911754 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 || | | ||| ||||| | | || || |||| |||||||||||||||||||||| Sbjct 1911753 CCTTGTT-CATCTTCGGCACAAGAGTGCTCGATCAGTAAGCTATTACGCACTCTTTCAAG 1911695 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338 | |||||||||| | || |||||||||| ||||| ||| | | ||| Sbjct 1911694 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACA 1911648 >seq91 Length=4251426 Score = 91.5 bits (100), Expect = 3e-16 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||||||||| ||| || | |||||||| | | || ||||| ||| | ||| Sbjct 1612826 AGTGAGCTATTACGCACTTTTTGAAAGGTGGCTGCTACTAGGCAGACCTCGTGGCTATCT 1612767 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| || ||| ||||| || |||| | | ||||||||||||||| |||||| | Sbjct 1612766 CTGCACCTTCACCTCCTTCATCAGTGAGCGATTATTTAGGGGCCTTAGCTAATGATCCAG 1612707 Query 386 GCTGTTTC 393 || |||| Sbjct 1612706 GCCATTTC 1612699 >seq1323 Length=1871497 Score = 80.6 bits (88), Expect = 6e-13 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 277 ACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336 ||| ||||||| |||| |||||||||| | || ||||| | |||||||| ||| | | Sbjct 1589773 ACGTACTCTTTTAAGGGTGGCTGCTTCTAGGCAAACCTTCCGGTTGTCTTTGCACCCTTA 1589832 Query 337 CATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | |||||| ||||||| | |||||||||||| ||| ||||| | ||| Sbjct 1589833 CCTCCTTTATCACTGAGCAGTCTTTTAGGGGCCTTAACTGGTGATCCGAGCT 1589884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177171636224