Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 206 6e-51
seq24 187 6e-45
seq28361 174 4e-41
seq33854 167 5e-39
seq74 158 3e-36
seq652 122 2e-25
seq2764 104 5e-20
seq569 98.7 2e-18
seq78 96.9 8e-18
seq276 93.3 1e-16
seq91 91.5 3e-16
seq1323 80.6 6e-13
>seq3956
Length=4762
Score = 206 bits (228), Expect = 6e-51
Identities = 298/414 (72%), Gaps = 20/414 (5%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| |||||||||||||||| ||| || |||| | | ||| ||||| ||
Sbjct 3333 CGACTACGCCTTTCGGCCTCGCCTTAGGGGCCGGCTAACCCTGCGAAGATTAACTTTACG 3274
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGAT-TCCCACC-CGTCACACGCTACTCATGCC 118
| |||||||||||| |||||| ||| | | ||| ||| || |||||||| |
Sbjct 3273 CAGGAACCCTTGGACTTTCGGCG-ACGCTGTCTTTCACAGCGTTTGTCGTTACTCATGTC 3215
Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGAC--A 176
|||||| |||| | | ||||| | | | | |||| | | ||| ||| |
Sbjct 3214 AGCATTCGCACTTCCGATATCTCCAGGATGC---CTCGCGGCTGTCCCTTCACGGACCTA 3158
Query 177 CG--ACGCTCCCCTACC-----CAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTA 229
|| ||||||| ||||| | | | | | ||| ||||||||| |||
Sbjct 3157 CGGAACGCTCCGCTACCGCTTGCGATCGCTCGCAAACCCAAAGCTTCGGCTCGCGGCTTG 3098
Query 230 AGCCCCGCTACATTATCGGCGCGGAATCACTTG-----ACCAGTGAGCTATTACGCACTC 284
||||||| ||||| ||||||| | | | |||| ||||||||||| |||||| ||
Sbjct 3097 AGCCCCGGTACATCTTCGGCGCAGGAACCCTTGTCTAGACCAGTGAGCTGTTACGCTTTC 3038
Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTT 344
||| ||||||||||||||| ||||||||||||||||||| | | | |||||||||||
Sbjct 3037 TTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTTTTGGGATTCCCACATCCTTT 2978
Query 345 CCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398
|||||| || | | | || ||||||||||||| || |||||| |||||||||||
Sbjct 2977 CCCACTTAGCCGCGAATTGGGGGCCTTAGCTGTTGGTCTGGGTTGTTTCCCTCT 2924
>seq24
Length=10012559
Score = 187 bits (206), Expect = 6e-45
Identities = 294/409 (72%), Gaps = 19/409 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 3988848 CGACTACGCCGTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3988907
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 3988908 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3988967
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | || ||| ||||| || || | |
Sbjct 3988968 ACATTCTCGCTTCCGCTTCG--TCCACCCCTGC-TCTTGCGGGTGCTTC-CCTCTAAGGC 3989023
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | | ||| | ||||||||||||| ||| |||| |
Sbjct 3989024 GGAACGCTCCCCTACCGATGTATTTTGACA---TTCCACAGCTTCGGCAGATCGCTTA-G 3989079
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| | || || | | || || |||||||||||||||||||||||||||
Sbjct 3989080 CCCCGTT-CATCTTTGGTGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 3989138
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||| | ||||| | || | || |||||| |||||
Sbjct 3989139 GGTGGCTGCTTCTAGGCAAACCTCCTAGCTGTCT-CTGTACCCTACCTCCTTTATCACTG 3989197
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 3989198 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 3989246
Score = 187 bits (206), Expect = 6e-45
Identities = 294/409 (72%), Gaps = 19/409 (5%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 3990972 CGACTACGCCGTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3991031
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 3991032 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3991091
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | || ||| ||||| || || | |
Sbjct 3991092 ACATTCTCGCTTCCGCTTCG--TCCACCCCTGC-TCTTGCGGGTGCTTC-CCTCTAAGGC 3991147
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | | ||| | ||||||||||||| ||| |||| |
Sbjct 3991148 GGAACGCTCCCCTACCGATGTATTTTGACA---TTCCACAGCTTCGGCAGATCGCTTA-G 3991203
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 3991204 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 3991262
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||| ||| ||||| | || | || |||||| |||||
Sbjct 3991263 GGTGGCTGCTTCTAGGCAAACCTCATGGCTGTCT-CTGTACCCTACCTCCTTTATCACTG 3991321
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| | ||||||| |||||||
Sbjct 3991322 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGAGCTGTTTTCCTCTCG 3991370
>seq28361
Length=1991474
Score = 174 bits (192), Expect = 4e-41
Identities = 156/193 (81%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||| ||| ||| ||| |||| |||||| | ||| ||||||| | |||| || ||
Sbjct 604570 CCACAACTTTGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCACTCGATCA 604627
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||||||||||||||||| |||||| |||| | || |||||||| |||||||
Sbjct 604628 GTGAGCTATTACGCACTCTTTCAAGAATGGCTACTTCTAGGCAAACCTCCTAGTTGTCTC 604687
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | || |||||| ||||||| || |||||| ||||||||||||||| |||
Sbjct 604688 TGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGACCTTAGCTGATGATCCGGG 604747
Query 387 CTGTTTCCCTCTC 399
|||||||||||||
Sbjct 604748 CTGTTTCCCTCTC 604760
>seq33854
Length=1984
Score = 167 bits (184), Expect = 5e-39
Identities = 153/192 (80%), Gaps = 6/192 (3%)
Strand=Plus/Plus
Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268
||||||| | || |||| ||||| | |||||| |||| || ||| || |||||||
Sbjct 659 GCTTCGGTGAATCACTTGAGCCCGGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 715
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
|||||||||||| |||| ||||||||||||||||||||| |||||||||||||| ||
Sbjct 716 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 775
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| ||| |||||| ||||| ||| | ||||||| ||||||| | ||||||||||
Sbjct 776 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 835
Query 389 GTTTCCCTCTCG 400
||||||||||||
Sbjct 836 GTTTCCCTCTCG 847
>seq74
Length=10145792
Score = 158 bits (174), Expect = 3e-36
Identities = 153/194 (79%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||| ||||||||| |||| |||| |||| | | ||| |||| || | | || || ||
Sbjct 509713 CCATAGCTTCGGCAGATAGCTTA-GCCCTGTT-CATCTTCGGTGCAAGAGCGCTCGATCA 509770
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||||||||||||||||||| ||||| |||| |||| |||||| | | |||||
Sbjct 509771 GTGAGCTATTACGCACTCTTTCAAGGGTGGCTACTTCTAAGCAAACCTCATAGCTGTCTC 509830
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | || |||||| || |||| ||| |||||||||||||||| ||||| |||
Sbjct 509831 TGCACCCTTACCTCCTTTATCAGTGAGCAGCCATTTAGGGGCCTTAGCTGGTGATCCGGG 509890
Query 387 CTGTTTCCCTCTCG 400
||||||| ||||||
Sbjct 509891 CTGTTTCTCTCTCG 509904
>seq652
Length=2384379
Score = 122 bits (134), Expect = 2e-25
Identities = 145/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||||||||||| || ||||| || ||| ||| | | ||| | | || | ||
Sbjct 211767 CCACAGCTTCGGCAAATCGCTTAATCCT-GCT-CATCTTTGACGCAAGAGCGATTAATCA 211710
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
||||||||||||||||| |||||||| |||||| ||| | | |||||||| | | ||
Sbjct 211709 GTGAGCTATTACGCACTTTTTCAAGGGTGGCTGTTTCTACACAAACCTCCTAGCTACCTC 211650
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
||| | | || |||||| ||| || || ||||||||| |||||| ||||| |||
Sbjct 211649 TGCACCCCTACCTCCTTTATCACAAAGCAGTCATTTAGGGGCCGTAGCTGGTGATCCGGG 211590
Query 387 CTGTTTCCCTCTCG 400
||||||||||||||
Sbjct 211589 CTGTTTCCCTCTCG 211576
>seq2764
Length=4463
Score = 104 bits (114), Expect = 5e-20
Identities = 202/288 (70%), Gaps = 18/288 (6%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 3653 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 3594
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGT-CACACGCTACTCATGCCT 119
||||||||||| | |||| | | |||||| |||| | || |||||| |||
Sbjct 3593 GAGGAACCCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 3534
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||| | | || | ||| ||||| || || | |
Sbjct 3533 ACATTCTCGCTTCCGCTTC--GTCCACCGC-CGCTCGCGCGGTTGCTTC-CCCCTAAGGC 3478
Query 178 G--ACGCTCCCCTACCCAACCA----CACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| ||| ||
Sbjct 3477 GGAACGCTCCCCTACCGATGCATTTTGACA---TCCCACAGCTTCGGCAGATCGCTT-AG 3422
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACG 279
||||| | ||| ||||||| | | || || |||||||||||||||
Sbjct 3421 CCCCG-TTCATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACG 3375
>seq569
Length=4400913
Score = 98.7 bits (108), Expect = 2e-18
Identities = 138/191 (72%), Gaps = 2/191 (1%)
Strand=Plus/Minus
Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268
||| |||| | ||| |||| |||||| | ||| ||||| | | || || ||||
Sbjct 259279 ACAACTTCAGTAGATCGCTTA-GCCCCGTT-CATCTTCGGCACAAGAGTGCTCGATCAGT 259222
Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328
||||||||||||||||||||||| ||||| |||| | || |||||||| | ||| |
Sbjct 259221 GAGCTATTACGCACTCTTTCAAGAGTGGCTACTTCTAGGCAAACCTCCTAACTATCTCTG 259162
Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
|| | || |||||| ||||||| | ||| |||||||||||| | ||| |||
Sbjct 259161 CACCCATACCTCCTTTATCACTGAGCAGTTATTTAAGGGCCTTAGCTGGTAATCCAAGCT 259102
Query 389 GTTTCCCTCTC 399
||||||| ||
Sbjct 259101 ATTTCCCTTTC 259091
>seq78
Length=2934372
Score = 96.9 bits (106), Expect = 8e-18
Identities = 122/165 (74%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
||||| ||| ||| ||| |||| ||| || | ||| ||||||| | | || | ||
Sbjct 153639 CCACAACTTAGGCAGATCGCTTA-GCCTCGTT-CATCTTCGGCGCAAGAGCGCTCAATCA 153696
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||| ||||||||||||||| |||| |||||||||| | || || ||| ||| |||||
Sbjct 153697 ATGAGTTATTACGCACTCTTTTAAGGGTGGCTGCTTCTAGGCAAATCTCTTGGCTGTCTC 153756
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTT 371
|| | | || |||||| || |||| | || |||||||||||
Sbjct 153757 TACACCCCTACCTCCTTTATCATCGAGTGATCATTTAGGGGCCTT 153801
>seq276
Length=2778623
Score = 93.3 bits (102), Expect = 1e-16
Identities = 235/347 (68%), Gaps = 18/347 (5%)
Strand=Plus/Minus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
|||||||| || || |||| |||||| | ||||||||| | || ||| | ||
Sbjct 1911985 CGACTACGTCTTTCAGCCTGATCTTAGGCCTTGACTCACCCTTCGTGGATGAACCTTGCC 1911926
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | || | | | |||||| |||| | || |||||| |||
Sbjct 1911925 GAGGAACCCTTAGGCTTTCAGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCA 1911866
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| ||| | |||| | || | ||| ||||| || |||| |
Sbjct 1911865 ACATTCTCGCTTCCGCTTCA--TTCACCCCTGC-TCTCGCGGGTGCTTC-CCTCTGAGGC 1911810
Query 178 GA--CGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
|| ||||||||||| | | ||| | ||| |||||| || || |||| |
Sbjct 1911809 GAAACGCTCCCCTACTGATGTATTTTGACA---TCCCATAGCTTCAGCAAATCGCTTA-G 1911754
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
|| | | ||| ||||| | | || || |||| ||||||||||||||||||||||
Sbjct 1911753 CCTTGTT-CATCTTCGGCACAAGAGTGCTCGATCAGTAAGCTATTACGCACTCTTTCAAG 1911695
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACA 338
| |||||||||| | || |||||||||| ||||| ||| | | |||
Sbjct 1911694 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACA 1911648
>seq91
Length=4251426
Score = 91.5 bits (100), Expect = 3e-16
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325
|||||||||||||||||| ||| || | |||||||| | | || ||||| ||| | |||
Sbjct 1612826 AGTGAGCTATTACGCACTTTTTGAAAGGTGGCTGCTACTAGGCAGACCTCGTGGCTATCT 1612767
Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385
||| || ||| ||||| || |||| | | ||||||||||||||| |||||| |
Sbjct 1612766 CTGCACCTTCACCTCCTTCATCAGTGAGCGATTATTTAGGGGCCTTAGCTAATGATCCAG 1612707
Query 386 GCTGTTTC 393
|| ||||
Sbjct 1612706 GCCATTTC 1612699
>seq1323
Length=1871497
Score = 80.6 bits (88), Expect = 6e-13
Identities = 85/112 (76%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 277 ACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCA 336
||| ||||||| |||| |||||||||| | || ||||| | |||||||| ||| | |
Sbjct 1589773 ACGTACTCTTTTAAGGGTGGCTGCTTCTAGGCAAACCTTCCGGTTGTCTTTGCACCCTTA 1589832
Query 337 CATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388
| |||||| ||||||| | |||||||||||| ||| ||||| | |||
Sbjct 1589833 CCTCCTTTATCACTGAGCAGTCTTTTAGGGGCCTTAACTGGTGATCCGAGCT 1589884
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177171636224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |