Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq247 113 4e-23
seq652 102 7e-20
seq74 82.4 6e-14
seq569 78.8 8e-13
>seq247
Length=549549
Score = 113 bits (124), Expect = 4e-23
Identities = 123/161 (76%), Gaps = 2/161 (1%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60
|||||||||| | ||||||| ||| | ||| ||| ||| ||||||| ||||||||
Sbjct 257289 CGAGTTGCAGCTTGCAATCCGAACTGAGGATGGGTTTT-TGGAGTTAGCTCACCCTCGCG 257231
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | || || | ||| ||||||||| ||||||| |||| |||||||| ||
Sbjct 257230 AGATCGCATCCTTTTGTTCCAACCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 257171
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||| ||||||||||||||| ||||||||||||| || ||||
Sbjct 257170 TGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 257130
>seq652
Length=2384379
Score = 102 bits (112), Expect = 7e-20
Identities = 120/160 (75%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCGG 61
|||||| || || ||||||| ||| | ||| || | ||| ||||||| || ||| ||
Sbjct 208437 GAGTTGTAGCCTGCAATCCGAACTGAGG-ACAGGTTTTTGGAGTTAGCTCACCTTCGTGG 208379
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | | |||| ||| ||||||||| |||||| |||| | |||||| |||||
Sbjct 208378 GATCTGGACCCTTTGTCCCGACCATTGTAGCACGTGTATCGCCCAAGGCATAAGAGCCAT 208319
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| |||||||||||| || ||||
Sbjct 208318 GATGACTTGACGTCATCCTTACCTTCCTCCGGCTTATCAC 208279
>seq74
Length=10145792
Score = 82.4 bits (90), Expect = 6e-14
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95
||| ||| ||||||| | ||||| || | ||| |||| ||| |||||||| ||
Sbjct 513571 TTTTTGGAGTTAGCTCACTCTCGCAGGATCGCGACCCTTTGTCCTGGCCATTGTAGCACA 513630
Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155
|||| ||| ||||| || ||||| ||||||||||||||| ||||||||||| | |
Sbjct 513631 TGTGTCGCCTAGGGCATAAAGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCAGCT 513690
Query 156 TGTCA 160
| |||
Sbjct 513691 TATCA 513695
>seq569
Length=4400913
Score = 78.8 bits (86), Expect = 8e-13
Identities = 116/161 (72%), Gaps = 4/161 (2%)
Strand=Plus/Minus
Query 3 GAGTTGCAGACTACAATCCGGACTACGAT-ACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60
||||||||| || |||| || || ||| || || | || ||||||| ||||||||
Sbjct 255467 GAGTTGCAGCCTGCAATTCGAAC--CGAGGACGGGTTTTTAGAGTTAGCTCACCCTCGCG 255410
Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120
| | ||| |||| ||| ||||||| ||||||| || ||||||| ||
Sbjct 255409 AGATTGCGACCCTTTGTCCCGGTCATTGTAGCACGTGTGTCACCTAGGGGATAAGGGGCA 255350
Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
| | ||||||| ||||||| ||||||||||||| || ||||
Sbjct 255349 TAATGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCAC 255309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415853404720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |