Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq247 113 4e-23 seq652 102 7e-20 seq74 82.4 6e-14 seq569 78.8 8e-13 >seq247 Length=549549 Score = 113 bits (124), Expect = 4e-23 Identities = 123/161 (76%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| | ||||||| ||| | ||| ||| ||| ||||||| |||||||| Sbjct 257289 CGAGTTGCAGCTTGCAATCCGAACTGAGGATGGGTTTT-TGGAGTTAGCTCACCCTCGCG 257231 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || || | ||| ||||||||| ||||||| |||| |||||||| || Sbjct 257230 AGATCGCATCCTTTTGTTCCAACCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCA 257171 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||||| || |||| Sbjct 257170 TGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 257130 >seq652 Length=2384379 Score = 102 bits (112), Expect = 7e-20 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGA-TTAGCTCCCCCTCGCGG 61 |||||| || || ||||||| ||| | ||| || | ||| ||||||| || ||| || Sbjct 208437 GAGTTGTAGCCTGCAATCCGAACTGAGG-ACAGGTTTTTGGAGTTAGCTCACCTTCGTGG 208379 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | | |||| ||| ||||||||| |||||| |||| | |||||| ||||| Sbjct 208378 GATCTGGACCCTTTGTCCCGACCATTGTAGCACGTGTATCGCCCAAGGCATAAGAGCCAT 208319 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| |||||||||||| || |||| Sbjct 208318 GATGACTTGACGTCATCCTTACCTTCCTCCGGCTTATCAC 208279 >seq74 Length=10145792 Score = 82.4 bits (90), Expect = 6e-14 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||| ||||||| | ||||| || | ||| |||| ||| |||||||| || Sbjct 513571 TTTTTGGAGTTAGCTCACTCTCGCAGGATCGCGACCCTTTGTCCTGGCCATTGTAGCACA 513630 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| ||| ||||| || ||||| ||||||||||||||| ||||||||||| | | Sbjct 513631 TGTGTCGCCTAGGGCATAAAGGGCATGATGACTTGACGTCATCCTCACCTTCCTCCAGCT 513690 Query 156 TGTCA 160 | ||| Sbjct 513691 TATCA 513695 >seq569 Length=4400913 Score = 78.8 bits (86), Expect = 8e-13 Identities = 116/161 (72%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 3 GAGTTGCAGACTACAATCCGGACTACGAT-ACACTTTCTGGGA-TTAGCTCCCCCTCGCG 60 ||||||||| || |||| || || ||| || || | || ||||||| |||||||| Sbjct 255467 GAGTTGCAGCCTGCAATTCGAAC--CGAGGACGGGTTTTTAGAGTTAGCTCACCCTCGCG 255410 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | ||| |||| ||| ||||||| ||||||| || ||||||| || Sbjct 255409 AGATTGCGACCCTTTGTCCCGGTCATTGTAGCACGTGTGTCACCTAGGGGATAAGGGGCA 255350 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | | ||||||| ||||||| ||||||||||||| || |||| Sbjct 255349 TAATGACTTGATGTCATCCTCACCTTCCTCCGGCTTATCAC 255309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415853404720