Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq3956 233 3e-59 seq35238 129 1e-27 seq74 129 1e-27 seq569 125 1e-26 seq652 100 5e-19 seq86 73.4 7e-11 >seq3956 Length=4762 Score = 233 bits (258), Expect = 3e-59 Identities = 221/282 (78%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||| ||| ||||||||||||||| | | |||| | ||||||||||||| ||||| Sbjct 527 CCCACGCTGTCGTGCCTCAGCGTCAGTTCCGGACCAGTGAGCCGCCTTCGCCACCGGTGT 468 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 || | || ||||||||| |||||||| |||||| || | |||| | ||||| | | || Sbjct 467 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTTCCGGAC 408 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 |||||| | |||| |||| |||| ||||||||| | |||||| |||||| Sbjct 407 TCAAGACATCCAGTATCAAGGGCAGTTCCGAGGTTGAGCCTCGGGATTTCACCCCTGACT 348 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | ||||||||| | |||||||| |||| | | |||| | |||||| ||| ||| || Sbjct 347 TAAATGCCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAACAACGCTAGCCCCCTTCG 288 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 287 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 246 >seq35238 Length=927 Score = 129 bits (142), Expect = 1e-27 Identities = 205/290 (71%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| | Sbjct 504 CCCATGCTTTCGCACACCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCCT 445 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 444 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 385 Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCAT-AGTTTTCACATCT 176 ||||| || ||||| | ||| || | ||| | | | ||||| | | Sbjct 384 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTGAACTTTCA-ACCC 326 Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 || ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| | Sbjct 325 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 272 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 271 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 222 >seq74 Length=10145792 Score = 129 bits (142), Expect = 1e-27 Identities = 202/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| || || |||||| | | |||||| || |||||| |||||||| | Sbjct 514090 GCTTTCGCCTCTTAGTGTCAGTGTCAGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 514149 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||||||||||| || ||| | |||||| |||| || | | |||| || Sbjct 514150 CCGATCTCTACGCATTTCACCACTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 514209 Query 126 AAAAACAGTTTCAAATGCAGGCTATG---GGTTGAGCCCATAGTTTTCACATCTGACTTG 182 |||||| | || |||| |||||||||| | ||| || | ||||| Sbjct 514210 CTTGGTAGTTTCCATCGC---CTATCTACGGTTGAGCCCTGGGATTTGACGGCGGACTTA 514266 Query 183 CCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA 242 | |||||| | ||||| |||||| | |||||||||||||||| ||| ||| Sbjct 514267 AAAAGCTACCTACATACGCTTTATGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTA 514326 Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||| ||| ||||| ||||||||| ||||||||| ||| || Sbjct 514327 TTACCGCAGCTATTGGCATAGAGTTAGCCGATGCTTATTCCCCAGATA 514374 >seq569 Length=4400913 Score = 125 bits (138), Expect = 1e-26 Identities = 202/288 (70%), Gaps = 7/288 (2%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||| | ||||| |||||| | | ||| || || |||||| |||||||| | Sbjct 254914 GCTTTCACCTCTCAGTGTCAGTGTCGGCCCAACAGAGTGCTTTCGCCGTTGGTGTTCTTT 254855 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | | |||||||||||||| ||| ||| | |||||| ||||| || | | |||| || Sbjct 254854 CTGGTCTCTACGCATTTCACTGCTCCACCGGAAATTCCCTTTGCCCCTACCGTACTCTAG 254795 Query 126 AAAAACAGTTTCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTGACTTG 182 | |||||| | || |||| |||||||||||| | ||| ||| | ||| Sbjct 254794 CTTGATAGTTTCCACCGC---CTATCCGGGGTTGAGCCCAGGGATTTGACAGCAAGCTTA 254738 Query 183 CCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA 242 | |||||| | |||||||||||| | | | |||||||||| ||| ||| Sbjct 254737 AAAGCTA-CCTACATACGTTTTACACCCAATCATTTAGAATAACGCTTGTATCCTCTGTA 254679 Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||| ||||||||| ||||||||| |||||||| ||| || Sbjct 254678 TTACCGCGGTTGCTGGCACAGAGTTAGCCGATACTTATTCCCCAGATA 254631 >seq652 Length=2384379 Score = 100 bits (110), Expect = 5e-19 Identities = 193/285 (68%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 |||||||| |||| |||||| | | | |||| || |||||| |||||||| | Sbjct 207885 GCTTTCGCCTCTCAATGTCAGTGTCAGCCTAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 207826 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||| |||||||||||| ||| | |||||| |||| || | |||| | Sbjct 207825 CTGATCTCTACACATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACTATACTCCAA 207766 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 |||||| | | | | |||||||||| | ||| || | ||||| Sbjct 207765 CTTGGTAGTTTCCACTACCTGTCCAGGGTTGAGCCTTGGGATTTGACGGCAGACTTAAAA 207706 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || | ||| | |||||| |||||| | || ||||||||||||| ||| ||||| Sbjct 207705 AGCCATCCACATACGCTTTACGCCCAATCATTCGGGATAACGCTTGCATCCTCTATATTA 207646 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||| || | |||| | ||||||| ||||||| | ||| || Sbjct 207645 CCGCGGGTGTTAGCACAGAATTAGCCGATGCTTATTTCCCAGATA 207601 >seq86 Length=7715951 Score = 73.4 bits (80), Expect = 7e-11 Identities = 70/90 (78%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260 ||||| ||||| | | | |||||||||||| ||| ||||||| |||| || ||||| Sbjct 6354558 CTTTATGTCCAATCATTTCAGATAACGCTTGCATCCTCTGTATTACTGCGGTTGTTGGCA 6354617 Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||| ||||||||| ||| || Sbjct 6354618 CAGAGTTAGCCGATGCTTATTCCCCAGATA 6354647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828507937096