Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 233 3e-59
seq35238 129 1e-27
seq74 129 1e-27
seq569 125 1e-26
seq652 100 5e-19
seq86 73.4 7e-11
>seq3956
Length=4762
Score = 233 bits (258), Expect = 3e-59
Identities = 221/282 (78%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||||||| ||| ||||||||||||||| | | |||| | ||||||||||||| |||||
Sbjct 527 CCCACGCTGTCGTGCCTCAGCGTCAGTTCCGGACCAGTGAGCCGCCTTCGCCACCGGTGT 468
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|| | || ||||||||| |||||||| |||||| || | |||| | ||||| | | ||
Sbjct 467 TCTTGCGAATATCTACGAATTTCACCTCTACACTCGCAGTTCCACTCACCTCTTCCGGAC 408
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|||||| | |||| |||| |||| ||||||||| | |||||| ||||||
Sbjct 407 TCAAGACATCCAGTATCAAGGGCAGTTCCGAGGTTGAGCCTCGGGATTTCACCCCTGACT 348
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| | ||||||||| | |||||||| |||| | | |||| | |||||| ||| ||| ||
Sbjct 347 TAAATGCCCGCCTACGCACCCTTTACGCCCAGTGATTCCGAACAACGCTAGCCCCCTTCG 288
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282
|||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 287 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGGGCTTCTTC 246
>seq35238
Length=927
Score = 129 bits (142), Expect = 1e-27
Identities = 205/290 (71%), Gaps = 12/290 (4%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
|||| |||||||| | ||||||| || |||| | | |||||||| ||| |
Sbjct 504 CCCATGCTTTCGCACACCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCCT 445
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||| |||| |||| || |||||||| ||||||||| |||||| | ||||| |||
Sbjct 444 TCCTTCGTAGATCTCCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 385
Query 121 TCAAGAAAAACAGTTTCAAATGCAG---GCTATGGGTTGAGCCCAT-AGTTTTCACATCT 176
||||| || ||||| | ||| || | ||| | | | ||||| | |
Sbjct 384 TCAAGTGAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTGAACTTTCA-ACCC 326
Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235
|| ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| |
Sbjct 325 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 272
Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
| ||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct 271 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 222
>seq74
Length=10145792
Score = 129 bits (142), Expect = 1e-27
Identities = 202/288 (70%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||||| || || |||||| | | |||||| || |||||| |||||||| |
Sbjct 514090 GCTTTCGCCTCTTAGTGTCAGTGTCAGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 514149
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || ||||||||||||||| || ||| | |||||| |||| || | | |||| ||
Sbjct 514150 CCGATCTCTACGCATTTCACCACTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCCAG 514209
Query 126 AAAAACAGTTTCAAATGCAGGCTATG---GGTTGAGCCCATAGTTTTCACATCTGACTTG 182
|||||| | || |||| |||||||||| | ||| || | |||||
Sbjct 514210 CTTGGTAGTTTCCATCGC---CTATCTACGGTTGAGCCCTGGGATTTGACGGCGGACTTA 514266
Query 183 CCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA 242
| |||||| | ||||| |||||| | |||||||||||||||| ||| |||
Sbjct 514267 AAAAGCTACCTACATACGCTTTATGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTA 514326
Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||| ||| ||||| ||||||||| ||||||||| ||| ||
Sbjct 514327 TTACCGCAGCTATTGGCATAGAGTTAGCCGATGCTTATTCCCCAGATA 514374
>seq569
Length=4400913
Score = 125 bits (138), Expect = 1e-26
Identities = 202/288 (70%), Gaps = 7/288 (2%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||| | ||||| |||||| | | ||| || || |||||| |||||||| |
Sbjct 254914 GCTTTCACCTCTCAGTGTCAGTGTCGGCCCAACAGAGTGCTTTCGCCGTTGGTGTTCTTT 254855
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| | |||||||||||||| ||| ||| | |||||| ||||| || | | |||| ||
Sbjct 254854 CTGGTCTCTACGCATTTCACTGCTCCACCGGAAATTCCCTTTGCCCCTACCGTACTCTAG 254795
Query 126 AAAAACAGTTTCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTGACTTG 182
| |||||| | || |||| |||||||||||| | ||| ||| | |||
Sbjct 254794 CTTGATAGTTTCCACCGC---CTATCCGGGGTTGAGCCCAGGGATTTGACAGCAAGCTTA 254738
Query 183 CCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA 242
| |||||| | |||||||||||| | | | |||||||||| ||| |||
Sbjct 254737 AAAGCTA-CCTACATACGTTTTACACCCAATCATTTAGAATAACGCTTGTATCCTCTGTA 254679
Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
||||||||| ||||||||| ||||||||| |||||||| ||| ||
Sbjct 254678 TTACCGCGGTTGCTGGCACAGAGTTAGCCGATACTTATTCCCCAGATA 254631
>seq652
Length=2384379
Score = 100 bits (110), Expect = 5e-19
Identities = 193/285 (68%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65
|||||||| |||| |||||| | | | |||| || |||||| |||||||| |
Sbjct 207885 GCTTTCGCCTCTCAATGTCAGTGTCAGCCTAGCAGAGTGCTTTCGCCGTTGGTGTTCTTT 207826
Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125
| || ||||| |||||||||||| ||| | |||||| |||| || | |||| |
Sbjct 207825 CTGATCTCTACACATTTCACCGCTCCACCGGAAATTCCCTCTGCCCCTACTATACTCCAA 207766
Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185
|||||| | | | | |||||||||| | ||| || | |||||
Sbjct 207765 CTTGGTAGTTTCCACTACCTGTCCAGGGTTGAGCCTTGGGATTTGACGGCAGACTTAAAA 207706
Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245
|| | ||| | |||||| |||||| | || ||||||||||||| ||| |||||
Sbjct 207705 AGCCATCCACATACGCTTTACGCCCAATCATTCGGGATAACGCTTGCATCCTCTATATTA 207646
Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|||||| || | |||| | ||||||| ||||||| | ||| ||
Sbjct 207645 CCGCGGGTGTTAGCACAGAATTAGCCGATGCTTATTTCCCAGATA 207601
>seq86
Length=7715951
Score = 73.4 bits (80), Expect = 7e-11
Identities = 70/90 (78%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 201 CTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCA 260
||||| ||||| | | | |||||||||||| ||| ||||||| |||| || |||||
Sbjct 6354558 CTTTATGTCCAATCATTTCAGATAACGCTTGCATCCTCTGTATTACTGCGGTTGTTGGCA 6354617
Query 261 CGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
| ||||||||| ||||||||| ||| ||
Sbjct 6354618 CAGAGTTAGCCGATGCTTATTCCCCAGATA 6354647
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828507937096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |