Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 131 1e-28
seq276 82.4 5e-14
seq24 82.4 5e-14
seq652 78.8 7e-13
seq35146 73.4 3e-11
>seq3956
Length=4762
Score = 131 bits (144), Expect = 1e-28
Identities = 114/139 (82%), Gaps = 2/139 (1%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 4372 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGGACCACCGGATCACTATGACCGA 4313
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| ||||||| | ||| ||||||| ||| ||| ||| ||||||||||||
Sbjct 4312 CTTTCGTCTCTGCTCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCG 4253
Query 121 CACTAC-GATTTCCGACCG 138
|| || ||||||||||||
Sbjct 4252 -ACGACCGATTTCCGACCG 4235
>seq276
Length=2778623
Score = 82.4 bits (90), Expect = 5e-14
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||| ||||| |||||||||| || ||| || ||||||| | ||
Sbjct 1913051 TAACTTTTATCCGTTTAGCGACGGCCCTTCCACTCGGCACCATCGAATCACTAAGGCCGA 1912992
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||| | |||||| | || | ||| ||| |||||| | |||||||| |||||||
Sbjct 1912991 CTTTTGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACT 1912934
>seq24
Length=10012559
Score = 82.4 bits (90), Expect = 5e-14
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||| |||||||||| || || || ||||||| | ||
Sbjct 3987789 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGAATCACTAAGGCCGA 3987848
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || | ||| ||| |||||| | ||| |||| |||||||
Sbjct 3987849 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 3987906
>seq652
Length=2384379
Score = 78.8 bits (86), Expect = 7e-13
Identities = 88/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| ||||||||||| |||||| |||| ||||| || ||| |||||||||| | ||
Sbjct 213031 TAACTTTTATCCGTGGAGCGACGGCCTTTCCACTCGACACCATCGGATCACTAAGGCCAA 212972
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118
|||||| |||||| | || ||| ||| |||||| | ||| |||| |||||||
Sbjct 212971 CTTTCGTCCCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 212914
>seq35146
Length=11046
Score = 73.4 bits (80), Expect = 3e-11
Identities = 87/117 (74%), Gaps = 7/117 (6%)
Strand=Plus/Minus
Query 4 CTTTTATCCGTTGAGCGATGGCCCTTCCAT----TCATAGC---CACCGGATCACTATGA 56
|||| ||||||| ||||| |||||| ||| | | || | ||||||||||| |
Sbjct 5325 CTTTGATCCGTTTAGCGACGGCCCTACCACCAGGTAACCGCTTTCGCCGGATCACTAAGT 5266
Query 57 CCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
||| |||||| |||||||| | ||||| ||||||| | ||||| ||||| || ||
Sbjct 5265 CCTACTTTCGTATCTGCTCGACTTGTTTGTCTCGCAGTTAAGCATCCTTTTACCTTT 5209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 351879959200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |