Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq3956 131 1e-28 seq276 82.4 5e-14 seq24 82.4 5e-14 seq652 78.8 7e-13 seq35146 73.4 3e-11 >seq3956 Length=4762 Score = 131 bits (144), Expect = 1e-28 Identities = 114/139 (82%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 4372 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGGACCACCGGATCACTATGACCGA 4313 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| ||||||| | ||| ||||||| ||| ||| ||| |||||||||||| Sbjct 4312 CTTTCGTCTCTGCTCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCG 4253 Query 121 CACTAC-GATTTCCGACCG 138 || || |||||||||||| Sbjct 4252 -ACGACCGATTTCCGACCG 4235 >seq276 Length=2778623 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||| ||||| |||||||||| || ||| || ||||||| | || Sbjct 1913051 TAACTTTTATCCGTTTAGCGACGGCCCTTCCACTCGGCACCATCGAATCACTAAGGCCGA 1912992 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||| | |||||| | || | ||| ||| |||||| | |||||||| ||||||| Sbjct 1912991 CTTTTGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTTTGCCTTTGCACT 1912934 >seq24 Length=10012559 Score = 82.4 bits (90), Expect = 5e-14 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| || || || ||||||| | || Sbjct 3987789 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGAATCACTAAGGCCGA 3987848 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || | ||| ||| |||||| | ||| |||| ||||||| Sbjct 3987849 CTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 3987906 >seq652 Length=2384379 Score = 78.8 bits (86), Expect = 7e-13 Identities = 88/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || ||||||||||| |||||| |||| ||||| || ||| |||||||||| | || Sbjct 213031 TAACTTTTATCCGTGGAGCGACGGCCTTTCCACTCGACACCATCGGATCACTAAGGCCAA 212972 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT 118 |||||| |||||| | || ||| ||| |||||| | ||| |||| ||||||| Sbjct 212971 CTTTCGTCCCTGCTCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACT 212914 >seq35146 Length=11046 Score = 73.4 bits (80), Expect = 3e-11 Identities = 87/117 (74%), Gaps = 7/117 (6%) Strand=Plus/Minus Query 4 CTTTTATCCGTTGAGCGATGGCCCTTCCAT----TCATAGC---CACCGGATCACTATGA 56 |||| ||||||| ||||| |||||| ||| | | || | ||||||||||| | Sbjct 5325 CTTTGATCCGTTTAGCGACGGCCCTACCACCAGGTAACCGCTTTCGCCGGATCACTAAGT 5266 Query 57 CCTGCTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 ||| |||||| |||||||| | ||||| ||||||| | ||||| ||||| || || Sbjct 5265 CCTACTTTCGTATCTGCTCGACTTGTTTGTCTCGCAGTTAAGCATCCTTTTACCTTT 5209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351879959200