Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001884.1
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
seq2566 277 2e-72
seq10646 275 6e-72
seq6951 264 1e-68
seq5649 235 6e-60
seq2225 212 6e-53
seq2030 132 5e-29
seq9029 127 2e-27
seq1871 127 2e-27
seq1165 127 2e-27
seq195 127 2e-27
seq650 122 9e-26
seq109 114 1e-23
seq23 80.6 3e-13
>seq2566
Length=12546
Score = 277 bits (306), Expect = 2e-72
Identities = 178/192 (93%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 12174 GGAATCAAGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATA 12233
Query 61 CATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119
||||| |||||||||||||||||||||| || ||||||||||||| ||||||||||||||
Sbjct 12234 CATTAGCATGGAATAATAGAATAGGACGTTGTGGTTCTATTTTGTTGGTTTCTAGGACCG 12293
Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179
|||||||||| |||| ||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 12294 -CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATT 12352
Query 180 CTTGGATTTATT 191
||||||||||||
Sbjct 12353 CTTGGATTTATT 12364
>seq10646
Length=592
Score = 275 bits (304), Expect = 6e-72
Identities = 177/191 (93%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 77 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 136
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||
Sbjct 137 CATTAGCATGGAATAATAGAATAGGAC-AGAGGTTCTATTTTGTTGGTTTCTAGGACCG- 194
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
| |||||||| |||| ||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct 195 CTGTAATGATTAATAGGGATAGTCGGGGGCGTCCGTATTCAATTGTCAGAGGTGAAATTC 254
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 255 TTGGATTTATT 265
>seq6951
Length=503
Score = 264 bits (292), Expect = 1e-68
Identities = 174/191 (91%), Gaps = 1/191 (1%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 132 GGAATCAAGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATA 191
Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120
||||| ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||
Sbjct 192 CATTAGCATGGAATAATGGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 250
Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180
|||||||||| |||| ||| ||||||||| | |||||||||| |||| |||||||||||
Sbjct 251 CCGTAATGATTAATAGGGACAGTCGGGGGCATTAGTATTCAATAGTCAGAGGTGAAATTC 310
Query 181 TTGGATTTATT 191
|||||||||||
Sbjct 311 TTGGATTTATT 321
>seq5649
Length=13326
Score = 235 bits (260), Expect = 6e-60
Identities = 167/188 (89%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 9785 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTCGCTCGAATA 9844
Query 61 CATTACCATGGAATAATAGAATAGGACGT-GCGGTTCTATTTTGTAGGTTTCTAGGACCG 119
||||| ||||||||||||||||||||||| || | ||||||||| |||| ||||
Sbjct 9845 CATTAGCATGGAATAATAGAATAGGACGTCGCTG-CCTATTTTGTTGGTTCATAGG--TA 9901
Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179
||||||||||||||| ||| ||||||||||||||||| ||| ||||| ||||||||||
Sbjct 9902 GCCGTAATGATAAATAGGGACAGTCGGGGGTGTCAGTACTCAGGTGTCAGAGGTGAAATT 9961
Query 180 CTTGGATT 187
||||||||
Sbjct 9962 CTTGGATT 9969
>seq2225
Length=7605
Score = 212 bits (234), Expect = 6e-53
Identities = 162/188 (86%), Gaps = 4/188 (2%)
Strand=Plus/Plus
Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 419 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATA 478
Query 61 CATTACCATGGAATAATAGAATAGGACGT-GCGGTTCTATTTTGTAGGTTTCTAGGACCG 119
||||| ||||||||||||||||||||||| || | ||||||||| |||| ||||
Sbjct 479 CATTAGCATGGAATAATAGAATAGGACGTCGCTG-CCTATTTTGTTGGTTCATAGG--TA 535
Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179
|||||||||| |||| || |||||| |||||| || |||| ||||| ||||||||||
Sbjct 536 GCCGTAATGATCAATAGGGCCGGTCGGGTGTGTCAATACTCAAGTGTCAGAGGTGAAATT 595
Query 180 CTTGGATT 187
||||||||
Sbjct 596 CTTGGATT 603
>seq2030
Length=1036
Score = 132 bits (146), Expect = 5e-29
Identities = 141/182 (77%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68
||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||
Sbjct 318 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 377
Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128
||| |||| | |||||| | |||| ||||| ||| || | ||| || ||||||
Sbjct 378 TGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATG 435
Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
|| || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 436 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 495
Query 189 AT 190
||
Sbjct 496 AT 497
>seq9029
Length=255
Score = 127 bits (140), Expect = 2e-27
Identities = 139/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||| | |||| |||| | |||||||| |||
Sbjct 244 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGAAAGCCTACGCTCTGTATACATTAGCAT 185
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 184 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 127
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 126 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 67
Query 190 T 190
|
Sbjct 66 T 66
>seq1871
Length=3978
Score = 127 bits (140), Expect = 2e-27
Identities = 139/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 3276 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 3217
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 3216 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 3159
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||| ||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 3158 TTAACAGGGACAGTTGGGGGCATTTGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 3099
Query 190 T 190
|
Sbjct 3098 T 3098
>seq1165
Length=8953
Score = 127 bits (140), Expect = 2e-27
Identities = 139/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| |||
Sbjct 289 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 348
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | || | ||||| ||| || | ||| || |||||||
Sbjct 349 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 406
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 407 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 466
Query 190 T 190
|
Sbjct 467 T 467
>seq195
Length=1358929
Score = 127 bits (140), Expect = 2e-27
Identities = 139/181 (77%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| |||
Sbjct 1294470 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCAT 1294529
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 1294530 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 1294587
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||||
Sbjct 1294588 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1294647
Query 190 T 190
|
Sbjct 1294648 T 1294648
Score = 89.7 bits (98), Expect = 5e-16
Identities = 101/133 (76%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117
|||||||| ||||| |||| | |||||| | |||| ||||| ||| || | | |||
Sbjct 1238854 ATACATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTTGGGAT 1238912
Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177
|| |||||||| || | ||| ||||||||| | |||| || |||| ||||||||
Sbjct 1238913 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAA 1238971
Query 178 TTCTTGGATTTAT 190
|||||||||||||
Sbjct 1238972 TTCTTGGATTTAT 1238984
>seq650
Length=1207
Score = 122 bits (134), Expect = 9e-26
Identities = 138/181 (76%), Gaps = 3/181 (2%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| |||||||||| ||||||||| | | |||||| |||| |||| | |||||||| |||
Sbjct 638 CTGTTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGCCTACGCTCTGTATACATTAGCAT 579
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 578 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 521
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| ||||||||| | ||||| || || | ||||||||||||||||||||
Sbjct 520 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTA 461
Query 190 T 190
|
Sbjct 460 T 460
>seq109
Length=8785251
Score = 114 bits (126), Expect = 1e-23
Identities = 137/181 (76%), Gaps = 5/181 (3%)
Strand=Plus/Minus
Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69
|| || ||||||| ||||||||| | |||||||| ||| |||| | |||||||| |||
Sbjct 7096393 CTGTTGCTTTGAAGAAATTAGAGTGCTCAAAGCAAACCTACGCTCTGTATACATTAGCAT 7096334
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | |||||| | |||| ||||| ||| || | ||| || |||||||
Sbjct 7096333 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 7096276
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189
| || | ||| | |||||||| | ||||| || |||| |||||||||||||||||||
Sbjct 7096275 TTAACAGGGACAATCGGGGGTATTCGTATTTCATAGTCA--GGTGAAATTCTTGGATTTA 7096218
Query 190 T 190
|
Sbjct 7096217 T 7096217
>seq23
Length=5704166
Score = 80.6 bits (88), Expect = 3e-13
Identities = 128/179 (72%), Gaps = 6/179 (3%)
Strand=Plus/Plus
Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTAC---CAT 69
|||||||||| ||||||||| |||||| | |||| |||| | |||||||| |||
Sbjct 4845890 TTACTTTGAAGAAATTAGAGTACTCAAAGTAAGCCTATGCTATGTATACATTATTAGCAT 4845949
Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129
|| |||| | ||||| | |||| ||||| ||| || | ||| | ||||| |
Sbjct 4845950 GGGATAACATCGTAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCAAA-GTAATAA 4846007
Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188
| || | || || ||| | | | |||||| || |||| ||||||||||||| |||||
Sbjct 4846008 TTAACAGGGTTATTCGAGAGCATTAGTATTTCATAGTCATAGGTGAAATTCTTAGATTT 4846066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511819575040
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