Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq2566 277 2e-72 seq10646 275 6e-72 seq6951 264 1e-68 seq5649 235 6e-60 seq2225 212 6e-53 seq2030 132 5e-29 seq9029 127 2e-27 seq1871 127 2e-27 seq1165 127 2e-27 seq195 127 2e-27 seq650 122 9e-26 seq109 114 1e-23 seq23 80.6 3e-13 >seq2566 Length=12546 Score = 277 bits (306), Expect = 2e-72 Identities = 178/192 (93%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || ||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 12174 GGAATCAAGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATA 12233 Query 61 CATTACCATGGAATAATAGAATAGGACG-TGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 ||||| |||||||||||||||||||||| || ||||||||||||| |||||||||||||| Sbjct 12234 CATTAGCATGGAATAATAGAATAGGACGTTGTGGTTCTATTTTGTTGGTTTCTAGGACCG 12293 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 |||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| Sbjct 12294 -CCGTAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATT 12352 Query 180 CTTGGATTTATT 191 |||||||||||| Sbjct 12353 CTTGGATTTATT 12364 >seq10646 Length=592 Score = 275 bits (304), Expect = 6e-72 Identities = 177/191 (93%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| Sbjct 77 GGAACCAGGACTTTTACCTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATA 136 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||||||||||||| | ||||||||||||| |||||||||||||| Sbjct 137 CATTAGCATGGAATAATAGAATAGGAC-AGAGGTTCTATTTTGTTGGTTTCTAGGACCG- 194 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 | |||||||| |||| ||||||||||||| ||| |||||||||||||| ||||||||||| Sbjct 195 CTGTAATGATTAATAGGGATAGTCGGGGGCGTCCGTATTCAATTGTCAGAGGTGAAATTC 254 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 255 TTGGATTTATT 265 >seq6951 Length=503 Score = 264 bits (292), Expect = 1e-68 Identities = 174/191 (91%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| || ||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 132 GGAATCAAGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATA 191 Query 61 CATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC 120 ||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||| Sbjct 192 CATTAGCATGGAATAATGGAATAGGACGTGTGGTTCTATTTTGTTGGTTTCTAGGACCG- 250 Query 121 CCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTC 180 |||||||||| |||| ||| ||||||||| | |||||||||| |||| ||||||||||| Sbjct 251 CCGTAATGATTAATAGGGACAGTCGGGGGCATTAGTATTCAATAGTCAGAGGTGAAATTC 310 Query 181 TTGGATTTATT 191 ||||||||||| Sbjct 311 TTGGATTTATT 321 >seq5649 Length=13326 Score = 235 bits (260), Expect = 6e-60 Identities = 167/188 (89%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| Sbjct 9785 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTCGCTCGAATA 9844 Query 61 CATTACCATGGAATAATAGAATAGGACGT-GCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 ||||| ||||||||||||||||||||||| || | ||||||||| |||| |||| Sbjct 9845 CATTAGCATGGAATAATAGAATAGGACGTCGCTG-CCTATTTTGTTGGTTCATAGG--TA 9901 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 ||||||||||||||| ||| ||||||||||||||||| ||| ||||| |||||||||| Sbjct 9902 GCCGTAATGATAAATAGGGACAGTCGGGGGTGTCAGTACTCAGGTGTCAGAGGTGAAATT 9961 Query 180 CTTGGATT 187 |||||||| Sbjct 9962 CTTGGATT 9969 >seq2225 Length=7605 Score = 212 bits (234), Expect = 6e-53 Identities = 162/188 (86%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 1 GGAACCAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATA 60 |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 419 GGAAACAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCATTTGCTCGAATA 478 Query 61 CATTACCATGGAATAATAGAATAGGACGT-GCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 ||||| ||||||||||||||||||||||| || | ||||||||| |||| |||| Sbjct 479 CATTAGCATGGAATAATAGAATAGGACGTCGCTG-CCTATTTTGTTGGTTCATAGG--TA 535 Query 120 CCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATT 179 |||||||||| |||| || |||||| |||||| || |||| ||||| |||||||||| Sbjct 536 GCCGTAATGATCAATAGGGCCGGTCGGGTGTGTCAATACTCAAGTGTCAGAGGTGAAATT 595 Query 180 CTTGGATT 187 |||||||| Sbjct 596 CTTGGATT 603 >seq2030 Length=1036 Score = 132 bits (146), Expect = 5e-29 Identities = 141/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCA 68 ||| |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| || Sbjct 318 ACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCA 377 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||| |||| | |||||| | |||| ||||| ||| || | ||| || |||||| Sbjct 378 TGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATG 435 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| ||||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 436 ATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTT 495 Query 189 AT 190 || Sbjct 496 AT 497 >seq9029 Length=255 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||| | |||| |||| | |||||||| ||| Sbjct 244 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGAAAGCCTACGCTCTGTATACATTAGCAT 185 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 184 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 127 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 126 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 67 Query 190 T 190 | Sbjct 66 T 66 >seq1871 Length=3978 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 3276 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACATTAGCAT 3217 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 3216 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 3159 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||| ||||| | ||||| || |||| |||||||||||||||||||| Sbjct 3158 TTAACAGGGACAGTTGGGGGCATTTGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 3099 Query 190 T 190 | Sbjct 3098 T 3098 >seq1165 Length=8953 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 289 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 348 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | || | ||||| ||| || | ||| || ||||||| Sbjct 349 GGGATAACATCATAGGATTT-CGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 406 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 407 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 466 Query 190 T 190 | Sbjct 467 T 467 >seq195 Length=1358929 Score = 127 bits (140), Expect = 2e-27 Identities = 139/181 (77%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||| ||| Sbjct 1294470 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACACTCTGTATACATTAGCAT 1294529 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 1294530 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 1294587 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 1294588 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 1294647 Query 190 T 190 | Sbjct 1294648 T 1294648 Score = 89.7 bits (98), Expect = 5e-16 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 58 ATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGAC 117 |||||||| ||||| |||| | |||||| | |||| ||||| ||| || | | ||| Sbjct 1238854 ATACATTAGCATGGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTTGGGAT 1238912 Query 118 CGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAA 177 || |||||||| || | ||| ||||||||| | |||| || |||| |||||||| Sbjct 1238913 CGGA-GTAATGATTAACAGGGACAGTCGGGGGCATTCATATTTCATAGTCAGAGGTGAAA 1238971 Query 178 TTCTTGGATTTAT 190 ||||||||||||| Sbjct 1238972 TTCTTGGATTTAT 1238984 >seq650 Length=1207 Score = 122 bits (134), Expect = 9e-26 Identities = 138/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | | |||||| |||| |||| | |||||||| ||| Sbjct 638 CTGTTACTTTGAAGAAATTAGAGTGCTTAAAGCAAGCCTACGCTCTGTATACATTAGCAT 579 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 578 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 521 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || || | |||||||||||||||||||| Sbjct 520 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTTAGAGGTGAAATTCTTGGATTTA 461 Query 190 T 190 | Sbjct 460 T 460 >seq109 Length=8785251 Score = 114 bits (126), Expect = 1e-23 Identities = 137/181 (76%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || || ||||||| ||||||||| | |||||||| ||| |||| | |||||||| ||| Sbjct 7096393 CTGTTGCTTTGAAGAAATTAGAGTGCTCAAAGCAAACCTACGCTCTGTATACATTAGCAT 7096334 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | |||||| | |||| ||||| ||| || | ||| || ||||||| Sbjct 7096333 GGGATAACATCATAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 7096276 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| | |||||||| | ||||| || |||| ||||||||||||||||||| Sbjct 7096275 TTAACAGGGACAATCGGGGGTATTCGTATTTCATAGTCA--GGTGAAATTCTTGGATTTA 7096218 Query 190 T 190 | Sbjct 7096217 T 7096217 >seq23 Length=5704166 Score = 80.6 bits (88), Expect = 3e-13 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTAC---CAT 69 |||||||||| ||||||||| |||||| | |||| |||| | |||||||| ||| Sbjct 4845890 TTACTTTGAAGAAATTAGAGTACTCAAAGTAAGCCTATGCTATGTATACATTATTAGCAT 4845949 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | ||||| | |||| ||||| ||| || | ||| | ||||| | Sbjct 4845950 GGGATAACATCGTAGGAT-TCCGGTCCTATTGTGTTGGCCTTCGGGATCAAA-GTAATAA 4846007 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | || | || || ||| | | | |||||| || |||| ||||||||||||| ||||| Sbjct 4846008 TTAACAGGGTTATTCGAGAGCATTAGTATTTCATAGTCATAGGTGAAATTCTTAGATTT 4846066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511819575040