Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001946.1
Length=179
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 138 1e-30
seq31330 75.2 1e-11
>seq3956
Length=4762
Score = 138 bits (152), Expect = 1e-30
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||||||||||||||| | | |||||||||||||||||||| |||||| |||
Sbjct 4360 GTTGAGCGATGGCCCTTCCATGCGGGACCACCGGATCACTATGACCGACTTTCGTCTCTG 4301
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143
||||| ||| ||||||||||| || ||||||||||||||||| | |||| ||
Sbjct 4300 CTCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGACCGATTTC 4241
Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179
|||||| | ||| ||| ||| || |||||||||
Sbjct 4240 CGACCGGTCTGAGCCTACCATCGCGCGCCTCCGTTA 4205
>seq31330
Length=2953
Score = 75.2 bits (82), Expect = 1e-11
Identities = 82/109 (75%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83
||||||||| ||||||||| | | || ||||||||||||| || |||||| |||
Sbjct 2086 GTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTG 2145
Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAAC 132
|||| | ||| |||| |||||| || |||||| ||||| | || ||
Sbjct 2146 TTCGACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCAC 2194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 473433106912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |