Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3956 311 1e-82 seq74 259 7e-67 seq276 223 5e-56 seq569 203 5e-50 seq31330 187 4e-45 seq652 183 5e-44 seq447 129 9e-28 seq134 82.4 1e-13 seq116 80.6 4e-13 seq24 80.6 4e-13 seq920 77.0 5e-12 >seq3956 Length=4762 Score = 311 bits (344), Expect = 1e-82 Identities = 234/275 (85%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| ||| |||| |||||||||||||||||||||||||| ||| || ||||| ||| Sbjct 4708 CGAGGTGGGTTTCGAGCTTAGATGCCTTCAGCTCTTATCCCGTCCGCACATAGCTACCCT 4649 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || ||| |||| ||||| ||| |||||||||| || | |||||||||||||||| Sbjct 4648 GCACTGCGGCTGGCGCCACAACAGGTCCACCAGAGGTGCGTTCGTCCCGGTCCTCTCGTA 4589 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||||| ||||||||| | |||||| |||||| | |||||||||||||||||||| Sbjct 4588 CTAGGGACAAATCCTCTCAATTCTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCA 4529 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || ||||||| ||||||||||| |||||||||||| Sbjct 4528 CGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 4469 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || ||||||||||||| || |||||||||||| Sbjct 4468 CTTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 4434 >seq74 Length=10145792 Score = 259 bits (286), Expect = 7e-67 Identities = 214/260 (82%), Gaps = 1/260 (0%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 ||||||||| |||||| |||||| ||| |||| ||| |||||| | | | | |||| Sbjct 508098 CTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCA 508157 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | ||||||| |||||||||| |||| || |||||||||||||||| ||| || |||| Sbjct 508158 CGATAACTGGTACACCAGAGGTGCGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCT 508217 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||||| || |||||||| |||||| ||||||||||||||| ||||||||||||||| Sbjct 508218 CTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCC 508277 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 ||||| ||| || ||||||||||||||||||||||||||||| || |||| |||||||| Sbjct 508278 AGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTATAGCCCCAG 508337 Query 256 GATGAGACGAGCCGACATCG 275 | | || |||||||||||| Sbjct 508338 GTGGCGAAGAGCCGACATCG 508357 >seq276 Length=2778623 Score = 223 bits (246), Expect = 5e-56 Identities = 214/273 (78%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63 || |||||| ||||||||| |||||| |||||| ||| |||| ||| || ||| Sbjct 1913385 GGTGGGCTTACTACTTAGATGCTTTCAGCAATTATCCACTCCGCACTTGGCTACCTAGCG 1913326 Query 64 ATGCACTTG-GCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | || ||| | ||||||| |||||||||| ||| ||| |||||||||||||| Sbjct 1913325 TTTACCATGAGCACGATAACTGGTACACCAGAGGTGCATCCTTCCTGGTCCTCTCGTACT 1913266 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | | | || ||||||||| || |||||||| |||||| ||||| ||||||||| | Sbjct 1913265 AGGAAAAGGTCCTCTCAATGCTCTAACGCCCACATCGGATATGGACCAAACTGTCTCACA 1913206 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| | | || ||||||||| ||||||||||||||||||| || | Sbjct 1913205 ACGTTCTGAACCCAGCTCACATACCGCTTTAATGGACGAACAGCCCAACCCTTGGAACAT 1913146 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||| ||| | || |||||||||||| Sbjct 1913145 ACTACAGCCCTAGGTGGTGAAGAGCCGACATCG 1913113 >seq569 Length=4400913 Score = 203 bits (224), Expect = 5e-50 Identities = 201/259 (78%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAG 76 |||||||| || ||| |||| | |||| |||| ||| |||| | | | | | |||| Sbjct 260868 TTAGATGCTTTTAGCAGTTATTCGCTCCACACTTGGCTACCCAACGTTTACCGTGGGCAT 260809 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | |||||||||||||||||| ||| | || |||||||||||||| ||| || ||||| Sbjct 260808 CATAACTGGTGCACCAGAGGTGCATCCTTTCCAGTCCTCTCGTACTAGGGAAAGGTCCTC 260749 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 | || || |||||||| || ||| ||||||||||||||| | | |||||||||||| Sbjct 260748 TTAATGCTCTAACGCCCACATCGAATATGGACCGAACTGTCTCACAATGTTCTGAACCCA 260689 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 |||| ||| | ||||||||||| || |||||||| |||| || |||| |||||||| | Sbjct 260688 GCTCACGTACAGCTTTAATGGGCAAATAGCCCAACTCTTGAAACATACTACAGCCCCAAG 260629 Query 257 ATGAGACGAGCCGACATCG 275 | || |||||||||||| Sbjct 260628 TGGCGAAGAGCCGACATCG 260610 >seq31330 Length=2953 Score = 187 bits (206), Expect = 4e-45 Identities = 192/251 (76%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| | Sbjct 1762 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 1821 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 1822 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 1881 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 1882 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 1941 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || |||| || |||||||| || ||||||||||| | |||| |||||||||| || | Sbjct 1942 ACCACTTTGATCGGCGAACAACCGAACCCTTGGGAACCTTTTCACCCCCAGGATGTGATG 2001 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 2002 AGTCGACATCG 2012 >seq652 Length=2384379 Score = 183 bits (202), Expect = 5e-44 Identities = 198/259 (76%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 18 TTAGATGCCTTCAGCTCTTATC--CCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74 |||||||| |||||| ||| | || || ||| ||| |||||| | | | | ||| Sbjct 213351 TTAGATGCTTTCAGCAGGTATTTGCTTTGCA--CTTGGCTACCCAGCGTTTACCATGGGC 213294 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 | | ||||||| ||||| |||| |||| || ||||||||| |||||| ||| || ||| Sbjct 213293 ACGATAACTGGTACACCAAAGGTGCGTCCTTCTCGGTCCTCTTGTACTAGGGAAAGGTCC 213234 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||||| || |||||||| | |||| ||||| ||||||||| |||| |||| || | Sbjct 213233 TCTCAATGCTCTAACGCCCACACCAGATATGGACCAAACTGTCTCACGACATTCTAAAGC 213174 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 || || | | | ||||| ||||||||||||||||||||||| || |||| |||||||| Sbjct 213173 CAACTTACATATCGCTTTATTGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCA 213114 Query 255 GGATGAGACGAGCCGACAT 273 || | || |||||||||| Sbjct 213113 GGTGGCGAAGAGCCGACAT 213095 >seq447 Length=788482 Score = 129 bits (142), Expect = 9e-28 Identities = 191/268 (71%), Gaps = 11/268 (4%) Strand=Plus/Minus Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGG-CAG 76 ||| |||| ||| || |||| | || | | || ||| || ||| || | ||| || Sbjct 398348 TTAAATGCTTTCGGCAGTTATTCGCTCTATATTTGGCTACCTAGCGATTACCGTGGGCAC 398289 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 | ||| ||||| |||||| ||| ||| |||||||||||||| || | | ||| Sbjct 398288 GATAACCAATGCACTAGAGGTGCATCCTTCCTAGTCCTCTCGTACTAGAGAAAAGTACTC 398229 Query 137 TCAAATT--------TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188 ||||||| || | |||||| | |||| | ||||| || |||| |||| ||| Sbjct 398228 TCAAATTCTCGATGCTCTAATGCCCACACCAGATATGAACCGAGCTATCTCACGACCTTC 398169 Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248 | ||| |||||| | | || |||||||||| ||||| |||||||||| | || |||| || Sbjct 398168 TAAACTCAGCTCACATACCGCTTTAATGGGTGAACACCCCAACCCTTTGAACATACTACA 398109 Query 249 GCCCCAGGATGA-GACGAGCCGACATCG 275 |||| ||| ||| || ||| ||||||| Sbjct 398108 GCCCTAGG-TGATGAAGAGTTGACATCG 398082 >seq134 Length=15115857 Score = 82.4 bits (90), Expect = 1e-13 Identities = 121/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164 ||||| |||||| | ||||||| || ||||||||| || ||| |||| | | | Sbjct 12620857 TCCCGACCCTCTCATGCTAAGGAAAGGTCCTCTCAATGATCTAGCGCTCACGCTGAACAT 12620798 Query 165 G-GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223 |||| | ||| ||| | | | | ||||||||||||| | | |||||||||||| || Sbjct 12620797 TAGACCAAGCTGCCTCACAATGCTTCGAACCCAGCTCGCCTTCTGCTTTAATGGGCGGAC 12620738 Query 224 AGCCCAACCCTTGGGA-CCTACTTCAGCCCCAGGATGAGACGAGCCGAC 271 ||||||||||| || || | |||||||| | | | |||||||| Sbjct 12620737 CGCCCAACCCTTAAGAGTATAATACAGCCCCAAAAGGCAAAGAGCCGAC 12620689 >seq116 Length=10441785 Score = 80.6 bits (88), Expect = 4e-13 Identities = 117/164 (71%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 || || |||||| || |||||| |||| | |||||| ||| |||||||| |||| Sbjct 10357252 CGGGGTGGGCTTACTACTGAGATGCTTTCAACAGTTATCCGCTCCGCACTTAGCTACCCA 10357311 Query 61 GC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119 || | | | | |||| | |||| || ||| || ||| ||| ||||| ||||||||| Sbjct 10357312 GCATTTACCGTGGGCACAATAACTAGTACACTAGGGGTGCATCCTTCCCGCTCCTCTCGT 10357371 Query 120 ACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163 |||| ||| | ||||||||| || || ||||| ||||| Sbjct 10357372 ACTAGGGAAAAGTCCTCTCAATGCTCTAACACCCACACTGGATA 10357415 Score = 73.4 bits (80), Expect = 6e-11 Identities = 109/152 (72%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 || |||||| |||||| ||||| |||| |||| | | || ||| | | | | |||| Sbjct 10180656 CTGAGATGCTTTCAGCAGTTATCTGCTCCACACTTGGTTACCTAGCATTTACCGTGGGCA 10180715 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135 | |||||| |||||| ||| |||| || ||||||||||||||| ||| | |||| Sbjct 10180716 TGATGACTGGTACACCAG-GGTGCGTCCTTCTTGGTCCTCTCGTACTAGGGAAAAGTCCT 10180774 Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGA 167 ||||| || || ||||| | |||| ||| Sbjct 10180775 CTCAATGCTCTAACACCCACACCAGATATGGA 10180806 >seq24 Length=10012559 Score = 80.6 bits (88), Expect = 4e-13 Identities = 117/164 (71%), Gaps = 1/164 (1%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 || || |||||| || |||||| || || |||||| ||| |||| ||| |||| Sbjct 285475 CGGGGTGGGCTTGCTACTGAGATGCTTTTAGTAGTTATCCACTCCGCACTTGGCTACCCA 285534 Query 61 GC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119 || | | || | |||| | ||||||| |||||| ||| || | ||| ||||||||||| Sbjct 285535 GCGTTTACAGTGGGCACAATAACTGGTACACCAGGGGTGCGTTCTTCCTGGTCCTCTCGT 285594 Query 120 ACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163 |||| ||| | | ||||||| | | |||||| |||||| Sbjct 285595 ACTAGGGAAAAGTTCTCTCAATGCTTTAATGCCCACATCGGATA 285638 Score = 75.2 bits (82), Expect = 2e-11 Identities = 102/141 (72%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||| | |||||| || |||||| || || |||||| |||| |||| ||| |||| Sbjct 360473 CGAAGTGGGCTTACTACTGAGATGCTTTTAGTATTTATCCACTCCACACTTGGCTACCCA 360532 Query 61 GC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119 | | | | | |||| | |||| || |||||| | | || | ||||||||||||||| Sbjct 360533 TCATTTACTGTGGGCACAATAACTAGTACACCAGGGATGCGTTCTTCCCGGTCCTCTCGT 360592 Query 120 ACTAAGGACAGCTCCTCTCAA 140 |||| ||| | ||||||||| Sbjct 360593 ACTAGGGAAAAGTCCTCTCAA 360613 >seq920 Length=30821 Score = 77.0 bits (84), Expect = 5e-12 Identities = 88/117 (75%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 ||||| ||| |||||||| |||||| | ||||||||||| || ||||||||| | | Sbjct 433 GATAGAAACCATACTGTCTCACGACGTATTTAACCCAGCTCGTGTAGCTCTTTAATTGAC 374 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCA-GCCCCAGGATGAGACGAGCCGACATCG 275 |||||| | ||||||| | || || || | | ||||||| ||||||||||| Sbjct 373 GAACAGTCAAACCCTTCGTGACTCCTGCATTCACGTGGATGAGCTAAGCCGACATCG 317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780524851936