Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 311 1e-82
seq74 259 7e-67
seq276 223 5e-56
seq569 203 5e-50
seq31330 187 4e-45
seq652 183 5e-44
seq447 129 9e-28
seq134 82.4 1e-13
seq116 80.6 4e-13
seq24 80.6 4e-13
seq920 77.0 5e-12
>seq3956
Length=4762
Score = 311 bits (344), Expect = 1e-82
Identities = 234/275 (85%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
||||| ||| |||| |||||||||||||||||||||||||| ||| || ||||| |||
Sbjct 4708 CGAGGTGGGTTTCGAGCTTAGATGCCTTCAGCTCTTATCCCGTCCGCACATAGCTACCCT 4649
Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120
|| ||| |||| ||||| ||| |||||||||| || | ||||||||||||||||
Sbjct 4648 GCACTGCGGCTGGCGCCACAACAGGTCCACCAGAGGTGCGTTCGTCCCGGTCCTCTCGTA 4589
Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180
||| ||||| ||||||||| | |||||| |||||| | ||||||||||||||||||||
Sbjct 4588 CTAGGGACAAATCCTCTCAATTCTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCA 4529
Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
|||||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||||
Sbjct 4528 CGACGTTCTGAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGAC 4469
Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| || ||||||||||||| || ||||||||||||
Sbjct 4468 CTTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 4434
>seq74
Length=10145792
Score = 259 bits (286), Expect = 7e-67
Identities = 214/260 (82%), Gaps = 1/260 (0%)
Strand=Plus/Plus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
||||||||| |||||| |||||| ||| |||| ||| |||||| | | | | ||||
Sbjct 508098 CTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCA 508157
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| ||||||| |||||||||| |||| || |||||||||||||||| ||| || ||||
Sbjct 508158 CGATAACTGGTACACCAGAGGTGCGTCCTTCTCGGTCCTCTCGTACTAGGGAAAGGTCCT 508217
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195
||||| || |||||||| |||||| ||||||||||||||| |||||||||||||||
Sbjct 508218 CTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCC 508277
Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255
||||| ||| || ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 508278 AGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTATAGCCCCAG 508337
Query 256 GATGAGACGAGCCGACATCG 275
| | || ||||||||||||
Sbjct 508338 GTGGCGAAGAGCCGACATCG 508357
>seq276
Length=2778623
Score = 223 bits (246), Expect = 5e-56
Identities = 214/273 (78%), Gaps = 1/273 (0%)
Strand=Plus/Minus
Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCT 63
|| |||||| ||||||||| |||||| |||||| ||| |||| ||| || |||
Sbjct 1913385 GGTGGGCTTACTACTTAGATGCTTTCAGCAATTATCCACTCCGCACTTGGCTACCTAGCG 1913326
Query 64 ATGCACTTG-GCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122
| | || ||| | ||||||| |||||||||| ||| ||| ||||||||||||||
Sbjct 1913325 TTTACCATGAGCACGATAACTGGTACACCAGAGGTGCATCCTTCCTGGTCCTCTCGTACT 1913266
Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182
| | | || ||||||||| || |||||||| |||||| ||||| ||||||||| |
Sbjct 1913265 AGGAAAAGGTCCTCTCAATGCTCTAACGCCCACATCGGATATGGACCAAACTGTCTCACA 1913206
Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242
|||||||||||||||||| | | || ||||||||| ||||||||||||||||||| || |
Sbjct 1913205 ACGTTCTGAACCCAGCTCACATACCGCTTTAATGGACGAACAGCCCAACCCTTGGAACAT 1913146
Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
||| |||||| ||| | || ||||||||||||
Sbjct 1913145 ACTACAGCCCTAGGTGGTGAAGAGCCGACATCG 1913113
>seq569
Length=4400913
Score = 203 bits (224), Expect = 5e-50
Identities = 201/259 (78%), Gaps = 1/259 (0%)
Strand=Plus/Minus
Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCAG 76
|||||||| || ||| |||| | |||| |||| ||| |||| | | | | | ||||
Sbjct 260868 TTAGATGCTTTTAGCAGTTATTCGCTCCACACTTGGCTACCCAACGTTTACCGTGGGCAT 260809
Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136
| |||||||||||||||||| ||| | || |||||||||||||| ||| || |||||
Sbjct 260808 CATAACTGGTGCACCAGAGGTGCATCCTTTCCAGTCCTCTCGTACTAGGGAAAGGTCCTC 260749
Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196
| || || |||||||| || ||| ||||||||||||||| | | ||||||||||||
Sbjct 260748 TTAATGCTCTAACGCCCACATCGAATATGGACCGAACTGTCTCACAATGTTCTGAACCCA 260689
Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256
|||| ||| | ||||||||||| || |||||||| |||| || |||| |||||||| |
Sbjct 260688 GCTCACGTACAGCTTTAATGGGCAAATAGCCCAACTCTTGAAACATACTACAGCCCCAAG 260629
Query 257 ATGAGACGAGCCGACATCG 275
| || ||||||||||||
Sbjct 260628 TGGCGAAGAGCCGACATCG 260610
>seq31330
Length=2953
Score = 187 bits (206), Expect = 4e-45
Identities = 192/251 (76%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88
|||| || | || | | ||||||||| ||| || ||| |||||| ||||| ||| |
Sbjct 1762 CAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 1821
Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147
|||| ||||| | ||| ||| |||||||||||||| || ||||||| || | |||
Sbjct 1822 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTCTCCCT 1881
Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204
|| || ||| |||||| ||||||||||||| ||||||||| |||||| ||| |||
Sbjct 1882 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 1941
Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264
|| |||| || |||||||| || ||||||||||| | |||| |||||||||| || |
Sbjct 1942 ACCACTTTGATCGGCGAACAACCGAACCCTTGGGAACCTTTTCACCCCCAGGATGTGATG 2001
Query 265 AGCCGACATCG 275
|| ||||||||
Sbjct 2002 AGTCGACATCG 2012
>seq652
Length=2384379
Score = 183 bits (202), Expect = 5e-44
Identities = 198/259 (76%), Gaps = 5/259 (2%)
Strand=Plus/Minus
Query 18 TTAGATGCCTTCAGCTCTTATC--CCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGC 74
|||||||| |||||| ||| | || || ||| ||| |||||| | | | | |||
Sbjct 213351 TTAGATGCTTTCAGCAGGTATTTGCTTTGCA--CTTGGCTACCCAGCGTTTACCATGGGC 213294
Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134
| | ||||||| ||||| |||| |||| || ||||||||| |||||| ||| || |||
Sbjct 213293 ACGATAACTGGTACACCAAAGGTGCGTCCTTCTCGGTCCTCTTGTACTAGGGAAAGGTCC 213234
Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194
|||||| || |||||||| | |||| ||||| ||||||||| |||| |||| || |
Sbjct 213233 TCTCAATGCTCTAACGCCCACACCAGATATGGACCAAACTGTCTCACGACATTCTAAAGC 213174
Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254
|| || | | | ||||| ||||||||||||||||||||||| || |||| ||||||||
Sbjct 213173 CAACTTACATATCGCTTTATTGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCA 213114
Query 255 GGATGAGACGAGCCGACAT 273
|| | || ||||||||||
Sbjct 213113 GGTGGCGAAGAGCCGACAT 213095
>seq447
Length=788482
Score = 129 bits (142), Expect = 9e-28
Identities = 191/268 (71%), Gaps = 11/268 (4%)
Strand=Plus/Minus
Query 18 TTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGG-CAG 76
||| |||| ||| || |||| | || | | || ||| || ||| || | ||| ||
Sbjct 398348 TTAAATGCTTTCGGCAGTTATTCGCTCTATATTTGGCTACCTAGCGATTACCGTGGGCAC 398289
Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136
| ||| ||||| |||||| ||| ||| |||||||||||||| || | | |||
Sbjct 398288 GATAACCAATGCACTAGAGGTGCATCCTTCCTAGTCCTCTCGTACTAGAGAAAAGTACTC 398229
Query 137 TCAAATT--------TCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTC 188
||||||| || | |||||| | |||| | ||||| || |||| |||| |||
Sbjct 398228 TCAAATTCTCGATGCTCTAATGCCCACACCAGATATGAACCGAGCTATCTCACGACCTTC 398169
Query 189 TGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCA 248
| ||| |||||| | | || |||||||||| ||||| |||||||||| | || |||| ||
Sbjct 398168 TAAACTCAGCTCACATACCGCTTTAATGGGTGAACACCCCAACCCTTTGAACATACTACA 398109
Query 249 GCCCCAGGATGA-GACGAGCCGACATCG 275
|||| ||| ||| || ||| |||||||
Sbjct 398108 GCCCTAGG-TGATGAAGAGTTGACATCG 398082
>seq134
Length=15115857
Score = 82.4 bits (90), Expect = 1e-13
Identities = 121/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 105 TCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAG 164
||||| |||||| | ||||||| || ||||||||| || ||| |||| | | |
Sbjct 12620857 TCCCGACCCTCTCATGCTAAGGAAAGGTCCTCTCAATGATCTAGCGCTCACGCTGAACAT 12620798
Query 165 G-GACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAAC 223
|||| | ||| ||| | | | | ||||||||||||| | | |||||||||||| ||
Sbjct 12620797 TAGACCAAGCTGCCTCACAATGCTTCGAACCCAGCTCGCCTTCTGCTTTAATGGGCGGAC 12620738
Query 224 AGCCCAACCCTTGGGA-CCTACTTCAGCCCCAGGATGAGACGAGCCGAC 271
||||||||||| || || | |||||||| | | | ||||||||
Sbjct 12620737 CGCCCAACCCTTAAGAGTATAATACAGCCCCAAAAGGCAAAGAGCCGAC 12620689
>seq116
Length=10441785
Score = 80.6 bits (88), Expect = 4e-13
Identities = 117/164 (71%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
|| || |||||| || |||||| |||| | |||||| ||| |||||||| ||||
Sbjct 10357252 CGGGGTGGGCTTACTACTGAGATGCTTTCAACAGTTATCCGCTCCGCACTTAGCTACCCA 10357311
Query 61 GC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119
|| | | | | |||| | |||| || ||| || ||| ||| ||||| |||||||||
Sbjct 10357312 GCATTTACCGTGGGCACAATAACTAGTACACTAGGGGTGCATCCTTCCCGCTCCTCTCGT 10357371
Query 120 ACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163
|||| ||| | ||||||||| || || ||||| |||||
Sbjct 10357372 ACTAGGGAAAAGTCCTCTCAATGCTCTAACACCCACACTGGATA 10357415
Score = 73.4 bits (80), Expect = 6e-11
Identities = 109/152 (72%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75
|| |||||| |||||| ||||| |||| |||| | | || ||| | | | | ||||
Sbjct 10180656 CTGAGATGCTTTCAGCAGTTATCTGCTCCACACTTGGTTACCTAGCATTTACCGTGGGCA 10180715
Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCT 135
| |||||| |||||| ||| |||| || ||||||||||||||| ||| | ||||
Sbjct 10180716 TGATGACTGGTACACCAG-GGTGCGTCCTTCTTGGTCCTCTCGTACTAGGGAAAAGTCCT 10180774
Query 136 CTCAAATTTCCTACGCCCACGACGGATAGGGA 167
||||| || || ||||| | |||| |||
Sbjct 10180775 CTCAATGCTCTAACACCCACACCAGATATGGA 10180806
>seq24
Length=10012559
Score = 80.6 bits (88), Expect = 4e-13
Identities = 117/164 (71%), Gaps = 1/164 (1%)
Strand=Plus/Plus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
|| || |||||| || |||||| || || |||||| ||| |||| ||| ||||
Sbjct 285475 CGGGGTGGGCTTGCTACTGAGATGCTTTTAGTAGTTATCCACTCCGCACTTGGCTACCCA 285534
Query 61 GC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119
|| | | || | |||| | ||||||| |||||| ||| || | ||| |||||||||||
Sbjct 285535 GCGTTTACAGTGGGCACAATAACTGGTACACCAGGGGTGCGTTCTTCCTGGTCCTCTCGT 285594
Query 120 ACTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATA 163
|||| ||| | | ||||||| | | |||||| ||||||
Sbjct 285595 ACTAGGGAAAAGTTCTCTCAATGCTTTAATGCCCACATCGGATA 285638
Score = 75.2 bits (82), Expect = 2e-11
Identities = 102/141 (72%), Gaps = 1/141 (1%)
Strand=Plus/Plus
Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60
||| | |||||| || |||||| || || |||||| |||| |||| ||| ||||
Sbjct 360473 CGAAGTGGGCTTACTACTGAGATGCTTTTAGTATTTATCCACTCCACACTTGGCTACCCA 360532
Query 61 GC-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGT 119
| | | | | |||| | |||| || |||||| | | || | |||||||||||||||
Sbjct 360533 TCATTTACTGTGGGCACAATAACTAGTACACCAGGGATGCGTTCTTCCCGGTCCTCTCGT 360592
Query 120 ACTAAGGACAGCTCCTCTCAA 140
|||| ||| | |||||||||
Sbjct 360593 ACTAGGGAAAAGTCCTCTCAA 360613
>seq920
Length=30821
Score = 77.0 bits (84), Expect = 5e-12
Identities = 88/117 (75%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219
||||| ||| |||||||| |||||| | ||||||||||| || ||||||||| | |
Sbjct 433 GATAGAAACCATACTGTCTCACGACGTATTTAACCCAGCTCGTGTAGCTCTTTAATTGAC 374
Query 220 GAACAGCCCAACCCTTGGGACCTACTTCA-GCCCCAGGATGAGACGAGCCGACATCG 275
|||||| | ||||||| | || || || | | ||||||| |||||||||||
Sbjct 373 GAACAGTCAAACCCTTCGTGACTCCTGCATTCACGTGGATGAGCTAAGCCGACATCG 317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780524851936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |