Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq3956 260 3e-67 seq74 228 2e-57 seq569 190 5e-46 seq652 170 5e-40 seq57 165 2e-38 seq35238 163 7e-38 seq86 163 7e-38 seq359 104 6e-20 seq85 96.9 8e-18 seq49 82.4 2e-13 >seq3956 Length=4762 Score = 260 bits (288), Expect = 3e-67 Identities = 173/192 (90%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| |||||| || ||| ||||||||||||||| ||||||||||||||||| Sbjct 210 CTTTACAACCCTAAGGCCGTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 151 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| || Sbjct 150 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 91 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||| Sbjct 90 TGGCTGGCCATCCTCTCAGACCAGCTATCGATCGTCGCCATGGTGGGCCGTTACCCCGCC 31 Query 184 AACTAGCTAATC 195 | | |||||||| Sbjct 30 ATCCAGCTAATC 19 >seq74 Length=10145792 Score = 228 bits (252), Expect = 2e-57 Identities = 294/403 (73%), Gaps = 31/403 (8%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || ||||| |||||||| | | ||| |||||| ||| |||||||||| |||||||| Sbjct 514405 TTCACGACCCGTGGGCCTTCTACCTCCACACGGCATTGCTCCATCAGGCTTTCGCCCATT 514464 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||| ||||||||||| |||||||||||| ||||||| Sbjct 514465 GCGAAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 514524 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||| ||||||||| |||| |||||| ||| || | | || | ||| Sbjct 514525 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTAATGCCTCACCA 514584 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 |||||||||| | | | | ||| || | || ||| ||| |||| Sbjct 514585 ACTAGCTAATTAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 514633 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||| || || |||||||||| ||| | ||| ||| |||| Sbjct 514634 TCCTCAGCC--TAGGGGGTGTT-GCAGCCGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCA 514690 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| ||| || || |||| Sbjct 514691 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 514736 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407 |||| |||||||||||||||| || || |||||||||||| Sbjct 514737 ---CCGTCCGACTTGCATGTGTTAAGCATGTCGCCAGCGTTCA 514776 >seq569 Length=4400913 Score = 190 bits (210), Expect = 5e-46 Identities = 289/410 (70%), Gaps = 30/410 (7%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 || || || || |||||||| | | ||| || ||| || | ||| |||| |||| ||| Sbjct 254600 TTCACGACTCGTGGGCCTTCTACCTCCACACGACATTGCACCGTCAAGCTTTCGCCTATT 254541 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||||||||||||||||| ||||| || ||| || ||||||||| ||||||| Sbjct 254540 GCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCATGTCTCAGTCCCAGTGT 254481 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||| |||||| ||||||||| |||| |||||| ||| | ||| || | ||| Sbjct 254480 GGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCA 254421 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| || | | | ||| | | ||| || | || | |||| Sbjct 254420 ACTAGCTAATCAGATGCGAGCCCCTCC--TCG-----GGC----AGATTCCTCCTTTTGC 254372 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | | || | ||||||||| || ||||||| || | ||||||| || | Sbjct 254371 TCCTCAGCC--TAGGGGGTATTAGCAGCCATTTCCAGCTATTGTTCCCCTCCCAAGGGTA 254314 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||| ||||| | ||| || || |||||| Sbjct 254313 GGTTCTTACGCGTTACTCACCCGTTCGCCATT------GGAAACACCA-----CTTCCT- 254266 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||||||||||||||| || |||||||||||||| ||||| Sbjct 254265 -----GTCCGACTTGCATGTGTTAAGCAGGCCGCCAGCGTTCATCCTGAG 254221 >seq652 Length=2384379 Score = 170 bits (188), Expect = 5e-40 Identities = 229/315 (73%), Gaps = 14/315 (4%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||| | | | |||||||||| || |||||||| |||||||||| || Sbjct 207564 ACCCGTAGGCCTTTTACCTCCACGCGGCATTACTCTGTCAGGCTTTTGCCCATTGTGGAA 207505 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 ||||| |||||||||||||| | ||||| ||| |||||||||| | |||||||||||| Sbjct 207504 AATTCCACACTGCTGCCTCCCATTGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGA 207445 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 ||||||||| || |||||| ||| |||||| ||| || ||| | | ||||||||| Sbjct 207444 TCATCCTCTTGGATCAGCTACTGATTATCGCCTTGGTAAGCTATTGTCTCACCAACTAGC 207385 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | || | | ||| || |||| ||| ||| |||| || | Sbjct 207384 TAATCAAACGTGAGGCCCTCC---------TCGCGCGAA-TTCCTCCT-TTTGCTCCTCA 207336 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAG-TGGTTATCCCCCTCCATCAGGCAGTTTC 309 | | |||| ||||||||| ||||||| || || | ||||||||| || || ||| Sbjct 207335 GCC--TATGGGGTATTAGCGGCCGTTTCTAGCTGTTGTTCCCCCTCCCAAGGGTAGGTTC 207278 Query 310 CCAGACATTACTCAC 324 || | |||||||| Sbjct 207277 TCATGCGTTACTCAC 207263 >seq57 Length=727578 Score = 165 bits (182), Expect = 2e-38 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||| || ||||| | | | || || |||| ||| | |||||||| |||||||| Sbjct 288454 TTTACAACTCGTGAGCCTTTTACCTCCATGCAGCATTGCTCCGTCAGGCTTTCGCCCATT 288395 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || || ||||| || |||| |||||| ||||||||||| |||||||||||||| ||||| Sbjct 288394 GTAGAAAATTCCTCATTGCTACCTCCCTTAGGAGTCTGGGCCGTGTCTCAGTTCTAGTGT 288335 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||| ||||||||| || || ||| |||| ||| || ||| || ||| || |||| Sbjct 288334 GGCTTATCATCCTCTTGGATCAACTATTGATCATCGTCTTGGTAAGCTATTGCCTTGCCA 288275 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 288274 ACTAGCTAATC 288264 Score = 149 bits (164), Expect = 2e-33 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||||| || Sbjct 311842 ACCCGTGGGCCTTCTACTTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGTGAAA 311783 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||| | ||| ||||| |||||| | | |||||||||||| | |||||||||| Sbjct 311782 AATTCCCTATTGCAAACTCCCTAAGGAGTTTAGGCCGTGTCTCAGTCCTAGTGTGGCTGA 311723 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 ||||||| | ||||| ||| |||| ||| || ||| | || || | ||||||||| Sbjct 311722 TCATCCTTTTGGACCAACTATTGATCATCGTCTTGGTAACCTGTTGCCTCACCAACTAGC 311663 Query 191 TAATC 195 ||||| Sbjct 311662 TAATC 311658 >seq35238 Length=927 Score = 163 bits (180), Expect = 7e-38 Identities = 149/187 (80%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 187 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 128 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 127 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 68 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 67 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 8 Query 182 CCAACTA 188 ||||||| Sbjct 7 CCAACTA 1 >seq86 Length=7715951 Score = 163 bits (180), Expect = 7e-38 Identities = 143/178 (80%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 || ||||| | | |||| ||||| || | |||||||| |||||||| | || || ||| Sbjct 6354703 GGTCTTCTACCTCCACGTGGCATTACTCCGTCAGGCTTTTGCCCATTGCGAAAAATACCC 6354762 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||||||||||||||||||| || ||| |||||||||||| ||| ||||| || ||||||| Sbjct 6354763 CACTGCTGCCTCCCGTAGGTGTTTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCT 6354822 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||||||| ||||| |||| |||||| | | | |||||| | | |||||||||||| Sbjct 6354823 CTCAGACTAGCTATTGATCATCGCCTTGATAAGTTATTACCTCACTAACTAGCTAATC 6354880 >seq359 Length=2044 Score = 104 bits (114), Expect = 6e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 61 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 120 Query 71 TATTCCCCACTGCTGCCTCCCGTAG 95 |||||||||||||||||||||||| Sbjct 121 AATTCCCCACTGCTGCCTCCCGTAG 145 Score = 95.1 bits (104), Expect = 3e-17 Identities = 113/154 (73%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| |||||||||| ||| | ||||||| ||||| ||| | | |||| Sbjct 236 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 295 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||||||||||| ||| || || |||| |||| |||||||| Sbjct 296 TCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 338 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || ||||||||||||||| ||||| Sbjct 339 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 372 >seq85 Length=5226098 Score = 96.9 bits (106), Expect = 8e-18 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82 ||| | | || ||||||| ||| | ||| | || || |||||| | || ||| ||||||| Sbjct 3576830 TCTACCTCCATGCGGCATTGCTCCGTCAAGTTTTCGTCCATTGAGGAAAATTTCCCACTG 3576889 Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142 ||||||| ||||||||| | | ||||| | | |||||||||| ||||||||||| Sbjct 3576890 CTGCCTCATGTAGGAGTCGTGGTCATGTCTTGATCCTAGTGTGGCTGATCATCCTCTCAT 3576949 Query 143 ACCAGCTAGGG 153 | |||||| || Sbjct 3576950 AGCAGCTATGG 3576960 >seq49 Length=4798478 Score = 82.4 bits (90), Expect = 2e-13 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 || ||| |||| ||||| ||| ||| |||||||||| | ||| |||| || |||| || Sbjct 2020417 CAATGCCGCCTTCCGTATTAGTATGGGCCGTGTCTCAATCCCAATGTGCCTAATCATTCT 2020358 Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 ||| ||||||| | |||| || || | | || ||| || | |||||||||||||| Sbjct 2020357 CTCGGACCAGCAACTGATCATCTCCATGATAAGCTATTGCCTCACCAACTAGCTAATC 2020300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221955339776