Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 260 3e-67
seq74 228 2e-57
seq569 190 5e-46
seq652 170 5e-40
seq57 165 2e-38
seq35238 163 7e-38
seq86 163 7e-38
seq359 104 6e-20
seq85 96.9 8e-18
seq49 82.4 2e-13
>seq3956
Length=4762
Score = 260 bits (288), Expect = 3e-67
Identities = 173/192 (90%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| |||||| || ||| ||||||||||||||| |||||||||||||||||
Sbjct 210 CTTTACAACCCTAAGGCCGTCATCACTCACGCGGCATGGCTGGATCAGGCTTGCGCCCAT 151
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||| ||
Sbjct 150 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGTCCCAATG 91
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 90 TGGCTGGCCATCCTCTCAGACCAGCTATCGATCGTCGCCATGGTGGGCCGTTACCCCGCC 31
Query 184 AACTAGCTAATC 195
| | ||||||||
Sbjct 30 ATCCAGCTAATC 19
>seq74
Length=10145792
Score = 228 bits (252), Expect = 2e-57
Identities = 294/403 (73%), Gaps = 31/403 (8%)
Strand=Plus/Plus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || ||||| |||||||| | | ||| |||||| ||| |||||||||| ||||||||
Sbjct 514405 TTCACGACCCGTGGGCCTTCTACCTCCACACGGCATTGCTCCATCAGGCTTTCGCCCATT 514464
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || |||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 514465 GCGAAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 514524
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| |||||||||| ||||||||| |||| |||||| ||| || | | || | |||
Sbjct 514525 GGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTAATGCCTCACCA 514584
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
|||||||||| | | | | ||| || | || ||| ||| ||||
Sbjct 514585 ACTAGCTAATTAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGC 514633
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||| || || |||||||||| ||| | ||| ||| ||||
Sbjct 514634 TCCTCAGCC--TAGGGGGTGTT-GCAGCCGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCA 514690
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||||||||||| ||| || || ||||
Sbjct 514691 GGTTCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC--- 514736
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCA 407
|||| |||||||||||||||| || || ||||||||||||
Sbjct 514737 ---CCGTCCGACTTGCATGTGTTAAGCATGTCGCCAGCGTTCA 514776
>seq569
Length=4400913
Score = 190 bits (210), Expect = 5e-46
Identities = 289/410 (70%), Gaps = 30/410 (7%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|| || || || |||||||| | | ||| || ||| || | ||| |||| |||| |||
Sbjct 254600 TTCACGACTCGTGGGCCTTCTACCTCCACACGACATTGCACCGTCAAGCTTTCGCCTATT 254541
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || ||||||||||||||||||| ||||| || ||| || ||||||||| |||||||
Sbjct 254540 GCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCATGTCTCAGTCCCAGTGT 254481
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| ||| |||||| ||||||||| |||| |||||| ||| | ||| || | |||
Sbjct 254480 GGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATTGCCTCACCA 254421
Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244
||||||||||| || | | | ||| | | ||| || | || | ||||
Sbjct 254420 ACTAGCTAATCAGATGCGAGCCCCTCC--TCG-----GGC----AGATTCCTCCTTTTGC 254372
Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304
|| | | | || | ||||||||| || ||||||| || | ||||||| || |
Sbjct 254371 TCCTCAGCC--TAGGGGGTATTAGCAGCCATTTCCAGCTATTGTTCCCCTCCCAAGGGTA 254314
Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364
| ||| | | |||||||||||| ||||| | ||| || || ||||||
Sbjct 254313 GGTTCTTACGCGTTACTCACCCGTTCGCCATT------GGAAACACCA-----CTTCCT- 254266
Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| |||||||||||||||| || |||||||||||||| |||||
Sbjct 254265 -----GTCCGACTTGCATGTGTTAAGCAGGCCGCCAGCGTTCATCCTGAG 254221
>seq652
Length=2384379
Score = 170 bits (188), Expect = 5e-40
Identities = 229/315 (73%), Gaps = 14/315 (4%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||| | | | |||||||||| || |||||||| |||||||||| ||
Sbjct 207564 ACCCGTAGGCCTTTTACCTCCACGCGGCATTACTCTGTCAGGCTTTTGCCCATTGTGGAA 207505
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
||||| |||||||||||||| | ||||| ||| |||||||||| | ||||||||||||
Sbjct 207504 AATTCCACACTGCTGCCTCCCATTGGAGTTTGGGCCGTGTCTCAATCCCAGTGTGGCTGA 207445
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
||||||||| || |||||| ||| |||||| ||| || ||| | | |||||||||
Sbjct 207444 TCATCCTCTTGGATCAGCTACTGATTATCGCCTTGGTAAGCTATTGTCTCACCAACTAGC 207385
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
||||| | || | | ||| || |||| ||| ||| |||| || |
Sbjct 207384 TAATCAAACGTGAGGCCCTCC---------TCGCGCGAA-TTCCTCCT-TTTGCTCCTCA 207336
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAG-TGGTTATCCCCCTCCATCAGGCAGTTTC 309
| | |||| ||||||||| ||||||| || || | ||||||||| || || |||
Sbjct 207335 GCC--TATGGGGTATTAGCGGCCGTTTCTAGCTGTTGTTCCCCCTCCCAAGGGTAGGTTC 207278
Query 310 CCAGACATTACTCAC 324
|| | ||||||||
Sbjct 207277 TCATGCGTTACTCAC 207263
>seq57
Length=727578
Score = 165 bits (182), Expect = 2e-38
Identities = 151/191 (79%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|||||||| || ||||| | | | || || |||| ||| | |||||||| ||||||||
Sbjct 288454 TTTACAACTCGTGAGCCTTTTACCTCCATGCAGCATTGCTCCGTCAGGCTTTCGCCCATT 288395
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
|| || ||||| || |||| |||||| ||||||||||| |||||||||||||| |||||
Sbjct 288394 GTAGAAAATTCCTCATTGCTACCTCCCTTAGGAGTCTGGGCCGTGTCTCAGTTCTAGTGT 288335
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
|||| ||||||||| || || ||| |||| ||| || ||| || ||| || ||||
Sbjct 288334 GGCTTATCATCCTCTTGGATCAACTATTGATCATCGTCTTGGTAAGCTATTGCCTTGCCA 288275
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 288274 ACTAGCTAATC 288264
Score = 149 bits (164), Expect = 2e-33
Identities = 144/185 (78%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| |||||||| | | |||||||||| ||| | |||||||| ||||||||||| ||
Sbjct 311842 ACCCGTGGGCCTTCTACTTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGTGAAA 311783
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||||| | ||| ||||| |||||| | | |||||||||||| | ||||||||||
Sbjct 311782 AATTCCCTATTGCAAACTCCCTAAGGAGTTTAGGCCGTGTCTCAGTCCTAGTGTGGCTGA 311723
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
||||||| | ||||| ||| |||| ||| || ||| | || || | |||||||||
Sbjct 311722 TCATCCTTTTGGACCAACTATTGATCATCGTCTTGGTAACCTGTTGCCTCACCAACTAGC 311663
Query 191 TAATC 195
|||||
Sbjct 311662 TAATC 311658
>seq35238
Length=927
Score = 163 bits (180), Expect = 7e-38
Identities = 149/187 (80%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 187 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 128
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 127 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 68
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 67 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 8
Query 182 CCAACTA 188
|||||||
Sbjct 7 CCAACTA 1
>seq86
Length=7715951
Score = 163 bits (180), Expect = 7e-38
Identities = 143/178 (80%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77
|| ||||| | | |||| ||||| || | |||||||| |||||||| | || || |||
Sbjct 6354703 GGTCTTCTACCTCCACGTGGCATTACTCCGTCAGGCTTTTGCCCATTGCGAAAAATACCC 6354762
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
||||||||||||||||||| || ||| |||||||||||| ||| ||||| || |||||||
Sbjct 6354763 CACTGCTGCCTCCCGTAGGTGTTTGGGCCGTGTCTCAGTCCCAATGTGGTTGATCATCCT 6354822
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
||||||| ||||| |||| |||||| | | | |||||| | | ||||||||||||
Sbjct 6354823 CTCAGACTAGCTATTGATCATCGCCTTGATAAGTTATTACCTCACTAACTAGCTAATC 6354880
>seq359
Length=2044
Score = 104 bits (114), Expect = 6e-20
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | ||
Sbjct 61 ACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 120
Query 71 TATTCCCCACTGCTGCCTCCCGTAG 95
||||||||||||||||||||||||
Sbjct 121 AATTCCCCACTGCTGCCTCCCGTAG 145
Score = 95.1 bits (104), Expect = 3e-17
Identities = 113/154 (73%), Gaps = 17/154 (11%)
Strand=Plus/Plus
Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320
||||||||| |||||||||| ||| | ||||||| ||||| ||| | | ||||
Sbjct 236 GGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 295
Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380
|||||||||||||||| ||| || || |||| |||| ||||||||
Sbjct 296 TCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 338
Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||| || ||||||||||||||| |||||
Sbjct 339 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 372
>seq85
Length=5226098
Score = 96.9 bits (106), Expect = 8e-18
Identities = 100/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 23 TCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTG 82
||| | | || ||||||| ||| | ||| | || || |||||| | || ||| |||||||
Sbjct 3576830 TCTACCTCCATGCGGCATTGCTCCGTCAAGTTTTCGTCCATTGAGGAAAATTTCCCACTG 3576889
Query 83 CTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAG 142
||||||| ||||||||| | | ||||| | | |||||||||| |||||||||||
Sbjct 3576890 CTGCCTCATGTAGGAGTCGTGGTCATGTCTTGATCCTAGTGTGGCTGATCATCCTCTCAT 3576949
Query 143 ACCAGCTAGGG 153
| |||||| ||
Sbjct 3576950 AGCAGCTATGG 3576960
>seq49
Length=4798478
Score = 82.4 bits (90), Expect = 2e-13
Identities = 89/118 (75%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137
|| ||| |||| ||||| ||| ||| |||||||||| | ||| |||| || |||| ||
Sbjct 2020417 CAATGCCGCCTTCCGTATTAGTATGGGCCGTGTCTCAATCCCAATGTGCCTAATCATTCT 2020358
Query 138 CTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
||| ||||||| | |||| || || | | || ||| || | ||||||||||||||
Sbjct 2020357 CTCGGACCAGCAACTGATCATCTCCATGATAAGCTATTGCCTCACCAACTAGCTAATC 2020300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221955339776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |