Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq3956 376 7e-102 seq74 284 4e-74 seq35238 264 3e-68 seq652 253 6e-65 seq569 244 3e-62 seq86 205 3e-50 seq57 159 1e-36 seq359 114 4e-23 seq49 93.3 1e-16 seq203 75.2 3e-11 seq85 75.2 3e-11 >seq3956 Length=4762 Score = 376 bits (416), Expect = 7e-102 Identities = 299/353 (85%), Gaps = 5/353 (1%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 ||||| | ||||||| |||||||| | ||| ||||||||| |||| |||||||||| Sbjct 2 AGGATTGGCCCGCGTTCGATTAGCTGGATGGCGGGGTAACGGCCCACCATGGCGACGATC 61 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||| | |||||||| || | |||||||||| |||||||||||| ||||||||||| Sbjct 62 GATAGCTGGTCTGAGAGGATGGCCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTA 121 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 ||||||||||||||||||||||||| ||||||||| ||||||||| |||| | |||||| Sbjct 122 CGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCG 181 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG-GAAGATAATGACGGTA- 387 |||| ||||| |||||| |||| |||||||||| | | || | || ||||||||||||| Sbjct 182 TGAGTGATGACGGCCTTAGGGTTGTAAAGCTCT-TTCGCACGCGACGATAATGACGGTAG 240 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 | ||| || |||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 241 CGTGA-GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTA 299 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | |||||| ||| |||||||||||||||||||| || ||||||| Sbjct 300 GCGTTGTTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGCATTTAAGTC 351 >seq74 Length=10145792 Score = 284 bits (314), Expect = 4e-74 Identities = 270/343 (79%), Gaps = 3/343 (1%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||| |||||||||||||| ||| | |||||||||||||| |||||||||| | Sbjct 514602 CGCGTCTAATTAGCTAGTTGGTGAGGCATTAGCTTACCAAGGCGATGATCAGTAGCTGGT 514543 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| |||||||||||| ||| ||||||| ||||||||| Sbjct 514542 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAG 514483 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||||| ||||| |||| ||| | || Sbjct 514482 CAGTGGGGAATTTTTCGCAATGGGCGAAAGCCTGATGGAGCAATGCCGTGTGGAGGTAGA 514423 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| |||||||| || ||| | | | ||||| ||||||| || || ||| Sbjct 514422 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGATATCTGGGGAAT 514363 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||| ||| |||||||||| ||| || ||||||||||| Sbjct 514362 AAGCATCGGCTAACTCTATGCCAATAGCTGCGGTAATACAGAGGATGCAAGCGTTATCCG 514303 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | | |||| ||||| || |||||| | || ||||||| Sbjct 514302 GAATGA-TTGGGCATAAAGCGTATGTAGGTAGCTTTTTAAGTC 514261 >seq35238 Length=927 Score = 264 bits (292), Expect = 3e-68 Identities = 253/321 (79%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233 |||||||| |||||| |||| |||||| | | ||| |||| | || || ||||| Sbjct 1 TAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATC 60 Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293 |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||||| || Sbjct 61 AGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTT 120 Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGT 351 | ||||||||| |||||| ||| |||||| |||||||| || ||||| | | | | | Sbjct 121 GGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCT 180 Query 352 CGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409 |||||||||| || || | | ||| ||||| | ||| ||||| ||||||||||||| Sbjct 181 TGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTA 240 Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469 ||| |||||||||||||||||||| ||| |||||| || ||| | |||||| ||| ||| Sbjct 241 ACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGG 299 Query 470 CGTAAAGGGTGCGTAGGTGGT 490 ||||||||| |||||| ||| Sbjct 300 CGTAAAGGGCACGTAGGCGGT 320 >seq652 Length=2384379 Score = 253 bits (280), Expect = 6e-65 Identities = 262/341 (77%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221 ||| |||||||||||||||| || || |||||||||||||| ||||||||| || | Sbjct 207375 CGTTTGATTAGCTAGTTGGTGAGACAATAGCTTACCAAGGCGATAATCAGTAGCTGATCC 207434 Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281 ||||| ||||| |||||| ||| | |||||||||| ||||||||| | ||||||||||| Sbjct 207435 AAGAGGATGATCAGCCACACTGGGATTGAGACACGGCCCAAACTCCAATGGGAGGCAGCA 207494 Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341 ||| ||||| || |||||||||||||||||||| || || |||||||| | ||| Sbjct 207495 GTGTGGAATTTTCCACAATGGGCAAAAGCCTGACAGAGTAATGCCGCGTGGAGGTAAAAG 207554 Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAA 399 |||| |||||| | || ||| | | | | |||| |||||||||| || | | || Sbjct 207555 GCCTACGGGTCATGAACTTCTTTTCCCGAAGAAGTAGCAATGACGGTATCTGGGAAATAA 207614 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||| | |||| | || ||||||||||| ||| || |||||||||| || Sbjct 207615 GCATCGGCTAATTCTGTGCTAACACCCGCGGTAATATAGAGGATGCAAGCGTTATCCCGA 207674 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 || | | |||||||||| || || | ||| || ||||||| Sbjct 207675 ATGA-TTGGGCGTAAAGCGTATGTGGATGGCTTTTTAAGTC 207714 >seq569 Length=4400913 Score = 244 bits (270), Expect = 3e-62 Identities = 261/341 (77%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||| |||||||||||||||||| ||| || ||||||||||||| |||||||||| | Sbjct 254403 CGCATCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAGTAGCTGGT 254462 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||||||||| |||||| ||| ||||||||| || |||||| ||||| |||||||| Sbjct 254463 CCGAGAGGGTGATCAGCCACACTGGGACTGAGACATGGCCCAAACCCCTACAGGAGGCAG 254522 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||| ||| ||||| ||| | |||| | || ||| | || Sbjct 254523 CAGTGGGGAATTTTTCGCAATAGGCGAAAGCTTGACGGTGCAATGTCGTGTGGAGGTAGA 254582 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397 ||||| || ||||| || ||| | | || ||||| |||||||||| || ||| Sbjct 254583 AGGCCCACGAGTCGTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 254642 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||| ||||||||| ||||||||| |||||||||||| ||| | |||||||| | Sbjct 254643 AAGTATCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATACAAGCGTTATTCT 254702 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498 ||| | | ||| ||||| || |||||| | || ||||| Sbjct 254703 AAATGA-TTGGGTGTAAAACGTATGTAGGTAGCTT-TTAAG 254741 >seq86 Length=7715951 Score = 205 bits (226), Expect = 3e-50 Identities = 239/323 (74%), Gaps = 16/323 (5%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 || |||||||||||||||| || |||||| |||| |||||||| ||||| |||| Sbjct 6354887 CGTGTCTGATTAGCTAGTTAGTGAGGTAATAACTTATCAAGGCGATGATCAATAGCTAGT 6354828 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| ||||||||| |||||||||||| |||||| |||||||||||||| Sbjct 6354827 CTGAGAGGATGATCAACCACATTGGGACTGAGACACGGCCCAAACACCTACGGGAGGCAG 6354768 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||||| || || | |||||||||||||||||| | || || ||| |||| | || Sbjct 6354767 CAGTGGGGTATTTTTCGCAATGGGCAAAAGCCTGACGGAGTAATGCCACGTGGAGGTAGA 6354708 Query 340 AGGCCTTCGGGTCGTAAA-------------GCTCTGTCCTCAAG--GAAGATAATGACG 384 || || ||||| | || | | | || ||| |||| |||||| Sbjct 6354707 AGACCCATGGGTCATCAACTTTTTTTTTTTTTTTTTTTTCTGAAGAAGAAG-CAATGACA 6354649 Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444 ||| || ||| |||| ||||||||| |||||| || |||| ||||||| ||| | Sbjct 6354648 GTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAACAACCGCAGTAATACAGAGGATG 6354589 Query 445 CTAGCGTTATCCGGAATTACTGG 467 | ||||||||| | ||| | ||| Sbjct 6354588 CAAGCGTTATCTGAAATGATTGG 6354566 >seq57 Length=727578 Score = 159 bits (176), Expect = 1e-36 Identities = 138/171 (81%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || ||||||||||||||||| |||| || |||||||||| ||| ||||| ||| || | Sbjct 288258 GCATCTGATTAGCTAGTTGGCAAGGCAATAGCTTACCAAGACGATGATCAATAGTTGATC 288317 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||| |||| |||||| | |||||||||||||| ||| ||||||| |||||| ||| Sbjct 288318 CAAGAGGATGATAAGCCACACTAGAACTGAGACACGGCCCAGACTCCTAAGGGAGGTAGC 288377 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 | || ||||| || ||||||||| ||||||||| | ||||| || || || Sbjct 288378 AATGAGGAATTTTCTACAATGGGCGAAAGCCTGACGGAGCAATGCTGCATG 288428 Score = 158 bits (174), Expect = 4e-36 Identities = 150/192 (78%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 || |||||||||||||||||| ||| ||| | |||||||| ||| ||||| ||| | | Sbjct 311652 GCATCTGATTAGCTAGTTGGTGAGGCAACAGGTTACCAAGACGATGATCAATAGTTGGTC 311711 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 | ||| ||||| |||||| | | |||||||||||| | |||||||| ||||| || Sbjct 311712 CAAAAGGATGATCAGCCACACTAGGACTGAGACACGGCCTAAACTCCTTAGGGAGTTTGC 311771 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 | | |||||| || |||||||||| ||||||||| | ||||| |||||||| | ||| Sbjct 311772 AATAGGGAATTTTTCACAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAAGTAGAA 311831 Query 341 GGCCTTCGGGTC 352 |||| |||||| Sbjct 311832 GGCCCACGGGTC 311843 >seq359 Length=2044 Score = 114 bits (126), Expect = 4e-23 Identities = 113/145 (78%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 267 CTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326 |||||||||||||||||||||||| || | |||||||| ||||||||| | ||||| ||| Sbjct 145 CTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCC 86 Query 327 GCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG 384 ||||| | |||||||| |||||| | || ||| | | || ||||| ||||||| Sbjct 85 GCGTGGAGGTAGAAGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACG 26 Query 385 GTACTTGAGGAGGAAGCCCCGGCTA 409 ||| || ||| |||| |||||| Sbjct 25 GTATCTGGGGAATAAGCATCGGCTA 1 >seq49 Length=4798478 Score = 93.3 bits (102), Expect = 1e-16 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 166 TGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||||||||||||| ||| || ||||| || || || ||||||| || | | |||| Sbjct 2020299 TGATTAGCTAGTTGGTGAGGCAATAGCTTATCATGGAGATGATCAGTTGCTGGTCCGAGA 2020358 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284 | |||| | |||||||| | |||||||||| ||| ||| ||||| |||| ||| || Sbjct 2020359 GAATGATTAGGCACATTGGGATTGAGACACGGCCCATACTAATACGGAAGGCGGCATTG 2020417 >seq203 Length=8626763 Score = 75.2 bits (82), Expect = 3e-11 Identities = 91/123 (74%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| ||| ||| |||||||||||| || ||| ||| |||||||||| || |||| Sbjct 5723740 AGGAGGGACTCGCATCTGATTAGCTAATTCCCGAGGCAACAACTTACCAAGGTGATGATC 5723799 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||||||| ||||| || |||||| | | ||||||||| || ||| ||| || Sbjct 5723800 AGTAGCCGGTACAAGAGGACAATTAGCCACACTAGGACTGAGACATGGCCCAGACT--TA 5723857 Query 270 CGG 272 ||| Sbjct 5723858 CGG 5723860 >seq85 Length=5226098 Score = 75.2 bits (82), Expect = 3e-11 Identities = 83/111 (75%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| | | | ||||| | | |||||||| |||||||| Sbjct 3576948 TGAGAGGATGATCAGCCACACTAGGATCAAGACATGACCACGACTCCTACATGAGGCAGC 3576889 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 |||||| ||| || | |||||| | ||| | ||| | ||||| ||||| || Sbjct 3576888 AGTGGGAAATTTTCCTCAATGGACGAAAACTTGACGGAGCAATGCCGCATG 3576838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497055233024