Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 376 7e-102
seq74 284 4e-74
seq35238 264 3e-68
seq652 253 6e-65
seq569 244 3e-62
seq86 205 3e-50
seq57 159 1e-36
seq359 114 4e-23
seq49 93.3 1e-16
seq203 75.2 3e-11
seq85 75.2 3e-11
>seq3956
Length=4762
Score = 376 bits (416), Expect = 7e-102
Identities = 299/353 (85%), Gaps = 5/353 (1%)
Strand=Plus/Plus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
||||| | ||||||| |||||||| | ||| ||||||||| |||| ||||||||||
Sbjct 2 AGGATTGGCCCGCGTTCGATTAGCTGGATGGCGGGGTAACGGCCCACCATGGCGACGATC 61
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
|||| | |||||||| || | |||||||||| |||||||||||| |||||||||||
Sbjct 62 GATAGCTGGTCTGAGAGGATGGCCAGCCACATTGGGACTGAGACACGGCCCAAACTCCTA 121
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||
Sbjct 122 CGGGAGGCAGCAGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCG 181
Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAG-GAAGATAATGACGGTA- 387
|||| ||||| |||||| |||| |||||||||| | | || | || |||||||||||||
Sbjct 182 TGAGTGATGACGGCCTTAGGGTTGTAAAGCTCT-TTCGCACGCGACGATAATGACGGTAG 240
Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447
| ||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 241 CGTGA-GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTA 299
Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
||||| | |||||| ||| |||||||||||||||||||| || |||||||
Sbjct 300 GCGTTGTTCGGAATCACT-GGGCGTAAAGGGTGCGTAGGCGGGCATTTAAGTC 351
>seq74
Length=10145792
Score = 284 bits (314), Expect = 4e-74
Identities = 270/343 (79%), Gaps = 3/343 (1%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||||||| |||||||||||||| ||| | |||||||||||||| |||||||||| |
Sbjct 514602 CGCGTCTAATTAGCTAGTTGGTGAGGCATTAGCTTACCAAGGCGATGATCAGTAGCTGGT 514543
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| ||||| |||||| ||| |||||||||||| ||| ||||||| |||||||||
Sbjct 514542 CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTATGGGAGGCAG 514483
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||||||| ||||||||||| ||||| |||| ||| | ||
Sbjct 514482 CAGTGGGGAATTTTTCGCAATGGGCGAAAGCCTGATGGAGCAATGCCGTGTGGAGGTAGA 514423
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| |||||||| || ||| | | | ||||| ||||||| || || |||
Sbjct 514422 AGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGATATCTGGGGAAT 514363
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
|||| ||||||||| ||||| ||| |||||||||| ||| || |||||||||||
Sbjct 514362 AAGCATCGGCTAACTCTATGCCAATAGCTGCGGTAATACAGAGGATGCAAGCGTTATCCG 514303
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|||| | | |||| ||||| || |||||| | || |||||||
Sbjct 514302 GAATGA-TTGGGCATAAAGCGTATGTAGGTAGCTTTTTAAGTC 514261
>seq35238
Length=927
Score = 264 bits (292), Expect = 3e-68
Identities = 253/321 (79%), Gaps = 5/321 (2%)
Strand=Plus/Plus
Query 174 TAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGTGATC 233
|||||||| |||||| |||| |||||| | | ||| |||| | || || |||||
Sbjct 1 TAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATC 60
Query 234 GGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGGAATATT 293
|||||| ||| |||||||||||| || ||||| ||||| |||||||||||||||| ||
Sbjct 61 AGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGGAATCTT 120
Query 294 GCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TTCGGGT 351
| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | | | |
Sbjct 121 GGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCT 180
Query 352 CGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCCGGCTA 409
|||||||||| || || | | ||| ||||| | ||| ||||| |||||||||||||
Sbjct 181 TGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCCCGGCTA 240
Query 410 ACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGG 469
||| |||||||||||||||||||| ||| |||||| || ||| | |||||| ||| |||
Sbjct 241 ACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGG 299
Query 470 CGTAAAGGGTGCGTAGGTGGT 490
||||||||| |||||| |||
Sbjct 300 CGTAAAGGGCACGTAGGCGGT 320
>seq652
Length=2384379
Score = 253 bits (280), Expect = 6e-65
Identities = 262/341 (77%), Gaps = 3/341 (1%)
Strand=Plus/Plus
Query 162 CGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCT 221
||| |||||||||||||||| || || |||||||||||||| ||||||||| || |
Sbjct 207375 CGTTTGATTAGCTAGTTGGTGAGACAATAGCTTACCAAGGCGATAATCAGTAGCTGATCC 207434
Query 222 GAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCA 281
||||| ||||| |||||| ||| | |||||||||| ||||||||| | |||||||||||
Sbjct 207435 AAGAGGATGATCAGCCACACTGGGATTGAGACACGGCCCAAACTCCAATGGGAGGCAGCA 207494
Query 282 GTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAG 341
||| ||||| || |||||||||||||||||||| || || |||||||| | |||
Sbjct 207495 GTGTGGAATTTTCCACAATGGGCAAAAGCCTGACAGAGTAATGCCGCGTGGAGGTAAAAG 207554
Query 342 GCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTACTTGAGGAGGAA 399
|||| |||||| | || ||| | | | | |||| |||||||||| || | | ||
Sbjct 207555 GCCTACGGGTCATGAACTTCTTTTCCCGAAGAAGTAGCAATGACGGTATCTGGGAAATAA 207614
Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459
|| ||||||| | |||| | || ||||||||||| ||| || |||||||||| ||
Sbjct 207615 GCATCGGCTAATTCTGTGCTAACACCCGCGGTAATATAGAGGATGCAAGCGTTATCCCGA 207674
Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
|| | | |||||||||| || || | ||| || |||||||
Sbjct 207675 ATGA-TTGGGCGTAAAGCGTATGTGGATGGCTTTTTAAGTC 207714
>seq569
Length=4400913
Score = 244 bits (270), Expect = 3e-62
Identities = 261/341 (77%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
||| |||||||||||||||||| ||| || ||||||||||||| |||||||||| |
Sbjct 254403 CGCATCTGATTAGCTAGTTGGTGAGGCAATAACTTACCAAGGCGATGATCAGTAGCTGGT 254462
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||||||||| |||||| ||| ||||||||| || |||||| ||||| ||||||||
Sbjct 254463 CCGAGAGGGTGATCAGCCACACTGGGACTGAGACATGGCCCAAACCCCTACAGGAGGCAG 254522
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || | |||| ||| ||||| ||| | |||| | || ||| | ||
Sbjct 254523 CAGTGGGGAATTTTTCGCAATAGGCGAAAGCTTGACGGTGCAATGTCGTGTGGAGGTAGA 254582
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGG 397
||||| || ||||| || ||| | | || ||||| |||||||||| || |||
Sbjct 254583 AGGCCCACGAGTCGTGAACTTCTTTTCCCAGAGAAGAAGCAATGACGGTATCTGGGGAAT 254642
Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457
||| ||||||||| ||||||||| |||||||||||| ||| | |||||||| |
Sbjct 254643 AAGTATCGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATACAAGCGTTATTCT 254702
Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAG 498
||| | | ||| ||||| || |||||| | || |||||
Sbjct 254703 AAATGA-TTGGGTGTAAAACGTATGTAGGTAGCTT-TTAAG 254741
>seq86
Length=7715951
Score = 205 bits (226), Expect = 3e-50
Identities = 239/323 (74%), Gaps = 16/323 (5%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|| |||||||||||||||| || |||||| |||| |||||||| ||||| ||||
Sbjct 6354887 CGTGTCTGATTAGCTAGTTAGTGAGGTAATAACTTATCAAGGCGATGATCAATAGCTAGT 6354828
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
|||||||| ||||| ||||||||| |||||||||||| |||||| ||||||||||||||
Sbjct 6354827 CTGAGAGGATGATCAACCACATTGGGACTGAGACACGGCCCAAACACCTACGGGAGGCAG 6354768
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
|||||||| || || | |||||||||||||||||| | || || ||| |||| | ||
Sbjct 6354767 CAGTGGGGTATTTTTCGCAATGGGCAAAAGCCTGACGGAGTAATGCCACGTGGAGGTAGA 6354708
Query 340 AGGCCTTCGGGTCGTAAA-------------GCTCTGTCCTCAAG--GAAGATAATGACG 384
|| || ||||| | || | | | || ||| |||| ||||||
Sbjct 6354707 AGACCCATGGGTCATCAACTTTTTTTTTTTTTTTTTTTTCTGAAGAAGAAG-CAATGACA 6354649
Query 385 GTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 444
||| || ||| |||| ||||||||| |||||| || |||| ||||||| ||| |
Sbjct 6354648 GTATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAACAACCGCAGTAATACAGAGGATG 6354589
Query 445 CTAGCGTTATCCGGAATTACTGG 467
| ||||||||| | ||| | |||
Sbjct 6354588 CAAGCGTTATCTGAAATGATTGG 6354566
>seq57
Length=727578
Score = 159 bits (176), Expect = 1e-36
Identities = 138/171 (81%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|| ||||||||||||||||| |||| || |||||||||| ||| ||||| ||| || |
Sbjct 288258 GCATCTGATTAGCTAGTTGGCAAGGCAATAGCTTACCAAGACGATGATCAATAGTTGATC 288317
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||| |||| |||||| | |||||||||||||| ||| ||||||| |||||| |||
Sbjct 288318 CAAGAGGATGATAAGCCACACTAGAACTGAGACACGGCCCAGACTCCTAAGGGAGGTAGC 288377
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
| || ||||| || ||||||||| ||||||||| | ||||| || || ||
Sbjct 288378 AATGAGGAATTTTCTACAATGGGCGAAAGCCTGACGGAGCAATGCTGCATG 288428
Score = 158 bits (174), Expect = 4e-36
Identities = 150/192 (78%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|| |||||||||||||||||| ||| ||| | |||||||| ||| ||||| ||| | |
Sbjct 311652 GCATCTGATTAGCTAGTTGGTGAGGCAACAGGTTACCAAGACGATGATCAATAGTTGGTC 311711
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
| ||| ||||| |||||| | | |||||||||||| | |||||||| ||||| ||
Sbjct 311712 CAAAAGGATGATCAGCCACACTAGGACTGAGACACGGCCTAAACTCCTTAGGGAGTTTGC 311771
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
| | |||||| || |||||||||| ||||||||| | ||||| |||||||| | |||
Sbjct 311772 AATAGGGAATTTTTCACAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAAGTAGAA 311831
Query 341 GGCCTTCGGGTC 352
|||| ||||||
Sbjct 311832 GGCCCACGGGTC 311843
>seq359
Length=2044
Score = 114 bits (126), Expect = 4e-23
Identities = 113/145 (78%), Gaps = 2/145 (1%)
Strand=Plus/Minus
Query 267 CTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCC 326
|||||||||||||||||||||||| || | |||||||| ||||||||| | ||||| |||
Sbjct 145 CTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCC 86
Query 327 GCGTGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACG 384
||||| | |||||||| |||||| | || ||| | | || ||||| |||||||
Sbjct 85 GCGTGGAGGTAGAAGGCCTACGGGTCCTGAACTTCTTTTCCCAGAGAAGAAGCAATGACG 26
Query 385 GTACTTGAGGAGGAAGCCCCGGCTA 409
||| || ||| |||| ||||||
Sbjct 25 GTATCTGGGGAATAAGCATCGGCTA 1
>seq49
Length=4798478
Score = 93.3 bits (102), Expect = 1e-16
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 166 TGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGA 225
|||||||||||||||| ||| || ||||| || || || ||||||| || | | ||||
Sbjct 2020299 TGATTAGCTAGTTGGTGAGGCAATAGCTTATCATGGAGATGATCAGTTGCTGGTCCGAGA 2020358
Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTG 284
| |||| | |||||||| | |||||||||| ||| ||| ||||| |||| ||| ||
Sbjct 2020359 GAATGATTAGGCACATTGGGATTGAGACACGGCCCATACTAATACGGAAGGCGGCATTG 2020417
>seq203
Length=8626763
Score = 75.2 bits (82), Expect = 3e-11
Identities = 91/123 (74%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
|||| ||| ||| |||||||||||| || ||| ||| |||||||||| || ||||
Sbjct 5723740 AGGAGGGACTCGCATCTGATTAGCTAATTCCCGAGGCAACAACTTACCAAGGTGATGATC 5723799
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
|||||||| ||||| || |||||| | | ||||||||| || ||| ||| ||
Sbjct 5723800 AGTAGCCGGTACAAGAGGACAATTAGCCACACTAGGACTGAGACATGGCCCAGACT--TA 5723857
Query 270 CGG 272
|||
Sbjct 5723858 CGG 5723860
>seq85
Length=5226098
Score = 75.2 bits (82), Expect = 3e-11
Identities = 83/111 (75%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||||| ||||| |||||| | | | ||||| | | |||||||| ||||||||
Sbjct 3576948 TGAGAGGATGATCAGCCACACTAGGATCAAGACATGACCACGACTCCTACATGAGGCAGC 3576889
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331
|||||| ||| || | |||||| | ||| | ||| | ||||| ||||| ||
Sbjct 3576888 AGTGGGAAATTTTCCTCAATGGACGAAAACTTGACGGAGCAATGCCGCATG 3576838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497055233024
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