Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 390 3e-106
seq74 228 2e-57
seq652 212 2e-52
seq35238 201 3e-49
seq569 196 1e-47
seq23 125 2e-26
seq17 91.5 4e-16
seq6345 82.4 2e-13
seq920 77.0 8e-12
>seq3956
Length=4762
Score = 390 bits (432), Expect = 3e-106
Identities = 328/400 (82%), Gaps = 2/400 (1%)
Strand=Plus/Plus
Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68
|| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 246 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 305
Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128
| |||||| ||||||||||||||||||||||| || ||||||||| ||||||| |
Sbjct 306 TTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGCATTTAAGTCAGGGGTGAAATCCC 365
Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188
||||||||| ||| ||||| |||| |||| | | || |||| | | || || ||||
Sbjct 366 GAGGCTCAACCTCGGAACTGCCCTTGATACTGGATGTCTTGAGTCCGGAAGAGGTGAGTG 425
Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248
||| | | ||||||| |||||||| |||||||||| | | ||||||| ||||||||||||
Sbjct 426 GAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCGGTGGCGAAGGCG 485
Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308
||| |||| | | ||||||| ||||||| ||| ||||||||||||||||||||||||||
Sbjct 486 GCTCACTGGTCCGGAACTGACGCTGAGGCACGACAGCGTGGGGAGCAAACAGGATTAGAT 545
Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368
||||||||||||||||||||||||||||||| | || || ||| | | | ||
Sbjct 546 ACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGT-TGGGTGATTTATCACT-GA 603
Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
||| |||||| ||||| | || ||||| |||||||||||
Sbjct 604 GTGGCGCAGCTAACGCTTTGAGCATTCCGCCTGGGGAGTA 643
>seq74
Length=10145792
Score = 228 bits (252), Expect = 2e-57
Identities = 295/405 (73%), Gaps = 2/405 (0%)
Strand=Plus/Minus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|| ||| |||| ||||||||| ||||| ||| |||||||||| ||| || |||
Sbjct 514370 TGGGGAATAAGCATCGGCTAACTCTATGCCAATAGCTGCGGTAATACAGAGGATGCAAGC 514311
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||| ||||| || |||||| | || ||||||| | || |||
Sbjct 514310 GTTATCCGGAATGATTGGGCATAAAGCGTATGTAGGTAGCTTTTTAAGTCCGCCGTCAAA 514251
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| | ||||||||| | || | |||||| | ||| |||| | | |||||||
Sbjct 514250 TCCCAGGGCTCAACCGTAGATAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 514191
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||| | ||| || ||||||||||||||| || | | |||||||| ||||||
Sbjct 514190 GAGGGAATTTCCGGTGGAGTGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 514131
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
|| |||||| ||| ||||||||| || ||||||| ||||||| || |||||
Sbjct 514130 AGCACTCTGCTGGGCTGACACTGACACTAAGAGGCGAAAGCTAGGGGAGCGAATGGGATT 514071
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363
|||||||| |||||| ||| ||||||||| |||||||| | | | ||| || |
Sbjct 514070 AGATACCCCAGTAGTCTTAGCCATAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 514012
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | |||| | ||| ||||| ||||||| || |||||||||||
Sbjct 514011 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 513967
>seq652
Length=2384379
Score = 212 bits (234), Expect = 2e-52
Identities = 250/336 (74%), Gaps = 2/336 (1%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72
|||| ||||||| | |||| | || ||||||||||| ||| || ||||||||||
Sbjct 207613 AAGCATCGGCTAATTCTGTGCTAACACCCGCGGTAATATAGAGGATGCAAGCGTTATCCC 207672
Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132
|||| | ||||||||||| || || | ||| || ||||||| | || ||| | | ||
Sbjct 207673 GAATGATTGGGCGTAAAGCGTATGTGGATGGCTTTTTAAGTCTGCCGTCAAATCCCAAGG 207732
Query 133 CTCAACCCCGGGACTGCT-TTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191
||||| ||| |||| | | | |||||| | | | |||| || ||||||| ||||
Sbjct 207733 CTCAA-CCCTGGACAGGTAGTGGAAACTACCAAGTTGGAGTATAGTAGGGGCAGAGGGAA 207791
Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251
|| | ||| |||||||||||| ||||| || || | |||||||| |||||| ||
Sbjct 207792 TTTCCGGTGGAGCGGTGAAATGTGTAGAGATCAGAAAGAACACCAACGGCGAAAGCACTC 207851
Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311
|||| | ||| ||||||| |||| ||||||| || ||||||| ||||||||||||
Sbjct 207852 TGCTAGGCTGACACTGACATTGAGAGGCGAAAGCTAGGCGAGCAAATTGGATTAGATACC 207911
Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347
| ||| ||| ||||||||||||| ||||||||||
Sbjct 207912 CCAGTAATCCTAGCCGTAAACGATGGATACTAGGTG 207947
>seq35238
Length=927
Score = 201 bits (222), Expect = 3e-49
Identities = 252/343 (73%), Gaps = 16/343 (5%)
Strand=Plus/Plus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 218 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 277
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| || | | || | | ||
Sbjct 278 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGG-----TGAATC-GGGTTG 331
Query 122 AAAGGCTATGGCTC----AACCCCGGGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGC 174
|||| | | | | || ||| |||| | ||||| | || || |||||
Sbjct 332 AAAGTTCAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGA 388
Query 175 AGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACAC 234
|| || ||||||||| | |||||| |||||||| || |||| | | ||||| |
Sbjct 389 GACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGC 448
Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294
|| |||||||| ||| |||| || ||| ||| | ||||||| ||||||||
Sbjct 449 CAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGTGTGCGAAAGCATGGGGAGC 508
Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 509 GAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 551
>seq569
Length=4400913
Score = 196 bits (216), Expect = 1e-47
Identities = 282/394 (72%), Gaps = 9/394 (2%)
Strand=Plus/Plus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
||||||||| ||||||||| |||||||||||| ||| | |||||||| | ||| |
Sbjct 254649 CGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATACAAGCGTTATTCTAAATGA 254708
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
|||| ||||| || |||||| | || ||||| | || ||| | ||||||||
Sbjct 254709 TTGGGTGTAAAACGTATGTAGGTAGCTT-TTAAGCTTGCTGTCAAATCCCTGGGCTCAAC 254767
Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198
||||| || | |||||| |||||||| | | |||||||| |||||| | |
Sbjct 254768 CCCGGATAGGCGGTGGAAACTATCAAGCTAGAGTACGGTAGGGGCAAAGGGAATTTCCGG 254827
Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258
|| ||| |||||||||||||| | || | |||||||| |||||| || || |||
Sbjct 254828 TGGAGCAGTGAAATGCGTAGAGACCAGAAAGAACACCAACGGCGAAAGCACTCTGTTGGG 254887
Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318
| | |||||||||||| |||||| ||||||| || |||||||||||||| ||||
Sbjct 254888 CCGACACTGACACTGAGAGGTGAAAGCTAGGGGAGCGAATGGGATTAGATACCCTAGTAG 254947
Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG----GTGCCG 374
| | | |||||| ||| |||||||| | | ||| || || ||| ||| |
Sbjct 254948 TACTAGTTGTAAACAATGGATACTAGG-CACCGTGCGTAT---TGACCCGTGCAGTGTTG 255003
Query 375 CAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
||| ||||| ||||||| |||||||||||||
Sbjct 255004 TAGCTAACGCGTTAAGTATCTCACCTGGGGAGTA 255037
>seq23
Length=5704166
Score = 125 bits (138), Expect = 2e-26
Identities = 144/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213
|||||| | ||| |||| | ||||||| |||||| || ||| |||||| |||||
Sbjct 2949755 GAAACTACCAAGCTGGAGTATGGTAGGGGCAGAGGGAATTTCTGGTGGAGCGGTAAAATG 2949696
Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273
|||||| || | | ||| |||| || ||| || |||| | | | ||| ||||||
Sbjct 2949695 CGTAGAGATCGGAAAGAATACCAACGGTGAAAGCACTCTGCTAGGCCGACACTAACACTG 2949636
Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333
|| ||||||| |||||| || ||||||||||||| ||||||| ||||||||||
Sbjct 2949635 AGAGGCGAAAGCTAGGGGAGTGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACG 2949576
Query 334 ATGAATACTAGGTG 347
||| ||||||||||
Sbjct 2949575 ATGGATACTAGGTG 2949562
>seq17
Length=1205220
Score = 91.5 bits (100), Expect = 4e-16
Identities = 196/291 (67%), Gaps = 4/291 (1%)
Strand=Plus/Minus
Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78
||||||||| |||||| |||| | |||||||| ||| | | |||| ||| ||| |
Sbjct 1123175 CGGCTAACTCTGTGCCAACAGCTGTGGTAATACAGAGGATACGAATGTTACCCGAAATGA 1123116
Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138
| ||||||||| || | ||||| || ||||||| | || ||| |||| |||
Sbjct 1123115 TTAGGCGTAAAGCGTTTGCAGGTGACTTTTTAAGTCTGCCGTCAAATCTCGAGGCTTAAC 1123056
Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG--GGGCAAGTGGAATTCCT 196
|| | || | |||||| | |||||||| ||||| |||||| | ||||
Sbjct 1123055 CCTAGACAGGCGATGGAAACTACCAAGCTAGAGT--AGGAGACGGGCAAAGGAAATTTTC 1122998
Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256
||| || ||||||||||||| | || | | |||| ||| | || || ||||||
Sbjct 1122997 GGTGGAGTGGTGAAATGCGTAAAGATCAAAAAGAACGCCAACAACAAAAGCACTTTGCTG 1122938
Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307
| | || || |||||| |||||| ||| ||||||| |||| ||
Sbjct 1122937 GGCCAACACCGATACTGAGAGGCGAAAGTTAGGGAAGCAAACGAGATTCGA 1122887
>seq6345
Length=1336
Score = 82.4 bits (90), Expect = 2e-13
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321
||||||||| ||||| |||| || |||| |||||| ||||||||||||||| |||||||
Sbjct 887 TAACTGACATTGAGGGACGAAGGCCTGGGTAGCAAATAGGATTAGATACCCTAGTAGTCC 828
Query 322 ACGCCGTAAACGATGAAT 339
| || | ||| ||||||
Sbjct 827 AGGCAGAAAATTATGAAT 810
>seq920
Length=30821
Score = 77.0 bits (84), Expect = 8e-12
Identities = 63/77 (82%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 263 AACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 322
|||||||| ||||| |||| || ||||||||||| |||||||| |||||| |||||||
Sbjct 23071 AACTGACATTGAGGGACGAAGGCTAGGGGAGCAAACCGGATTAGAGACCCTGTTAGTCCA 23130
Query 323 CGCCGTAAACGATGAAT 339
|| | ||| ||||||
Sbjct 23131 AGCAGAAAATTATGAAT 23147
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202762323968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |