Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq3956 390 3e-106 seq74 228 2e-57 seq652 212 2e-52 seq35238 201 3e-49 seq569 196 1e-47 seq23 125 2e-26 seq17 91.5 4e-16 seq6345 82.4 2e-13 seq920 77.0 8e-12 >seq3956 Length=4762 Score = 390 bits (432), Expect = 3e-106 Identities = 328/400 (82%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 246 GAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTG 305 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT 128 | |||||| ||||||||||||||||||||||| || ||||||||| ||||||| | Sbjct 306 TTCGGAATCACTGGGCGTAAAGGGTGCGTAGGCGGGCATTTAAGTCAGGGGTGAAATCCC 365 Query 129 ATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTG 188 ||||||||| ||| ||||| |||| |||| | | || |||| | | || || |||| Sbjct 366 GAGGCTCAACCTCGGAACTGCCCTTGATACTGGATGTCTTGAGTCCGGAAGAGGTGAGTG 425 Query 189 GAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCG 248 ||| | | ||||||| |||||||| |||||||||| | | ||||||| |||||||||||| Sbjct 426 GAACTGCGAGTGTAGAGGTGAAATTCGTAGATATTCGCAAGAACACCGGTGGCGAAGGCG 485 Query 249 GCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGAT 308 ||| |||| | | ||||||| ||||||| ||| |||||||||||||||||||||||||| Sbjct 486 GCTCACTGGTCCGGAACTGACGCTGAGGCACGACAGCGTGGGGAGCAAACAGGATTAGAT 545 Query 309 ACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG 368 ||||||||||||||||||||||||||||||| | || || ||| | | | || Sbjct 546 ACCCTGGTAGTCCACGCCGTAAACGATGAATGCCAGCCGT-TGGGTGATTTATCACT-GA 603 Query 369 GTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| |||||| ||||| | || ||||| ||||||||||| Sbjct 604 GTGGCGCAGCTAACGCTTTGAGCATTCCGCCTGGGGAGTA 643 >seq74 Length=10145792 Score = 228 bits (252), Expect = 2e-57 Identities = 295/405 (73%), Gaps = 2/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| ||||| ||| |||||||||| ||| || ||| Sbjct 514370 TGGGGAATAAGCATCGGCTAACTCTATGCCAATAGCTGCGGTAATACAGAGGATGCAAGC 514311 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||| ||||| || |||||| | || ||||||| | || ||| Sbjct 514310 GTTATCCGGAATGATTGGGCATAAAGCGTATGTAGGTAGCTTTTTAAGTCCGCCGTCAAA 514251 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||||||||| | || | |||||| | ||| |||| | | ||||||| Sbjct 514250 TCCCAGGGCTCAACCGTAGATAGGCGATGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 514191 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| || ||||||||||||||| || | | |||||||| |||||| Sbjct 514190 GAGGGAATTTCCGGTGGAGTGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 514131 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| ||| ||||||||| || ||||||| ||||||| || ||||| Sbjct 514130 AGCACTCTGCTGGGCTGACACTGACACTAAGAGGCGAAAGCTAGGGGAGCGAATGGGATT 514071 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| |||||| ||| ||||||||| |||||||| | | | ||| || | Sbjct 514070 AGATACCCCAGTAGTCTTAGCCATAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 514012 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 514011 GTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 513967 >seq652 Length=2384379 Score = 212 bits (234), Expect = 2e-52 Identities = 250/336 (74%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||| | |||| | || ||||||||||| ||| || |||||||||| Sbjct 207613 AAGCATCGGCTAATTCTGTGCTAACACCCGCGGTAATATAGAGGATGCAAGCGTTATCCC 207672 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || || | ||| || ||||||| | || ||| | | || Sbjct 207673 GAATGATTGGGCGTAAAGCGTATGTGGATGGCTTTTTAAGTCTGCCGTCAAATCCCAAGG 207732 Query 133 CTCAACCCCGGGACTGCT-TTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||| ||| |||| | | | |||||| | | | |||| || ||||||| |||| Sbjct 207733 CTCAA-CCCTGGACAGGTAGTGGAAACTACCAAGTTGGAGTATAGTAGGGGCAGAGGGAA 207791 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || | ||| |||||||||||| ||||| || || | |||||||| |||||| || Sbjct 207792 TTTCCGGTGGAGCGGTGAAATGTGTAGAGATCAGAAAGAACACCAACGGCGAAAGCACTC 207851 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||| | ||| ||||||| |||| ||||||| || ||||||| |||||||||||| Sbjct 207852 TGCTAGGCTGACACTGACATTGAGAGGCGAAAGCTAGGCGAGCAAATTGGATTAGATACC 207911 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347 | ||| ||| ||||||||||||| |||||||||| Sbjct 207912 CCAGTAATCCTAGCCGTAAACGATGGATACTAGGTG 207947 >seq35238 Length=927 Score = 201 bits (222), Expect = 3e-49 Identities = 252/343 (73%), Gaps = 16/343 (5%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 218 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 277 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| || | | || | | || Sbjct 278 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGG-----TGAATC-GGGTTG 331 Query 122 AAAGGCTATGGCTC----AACCCCGGGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGC 174 |||| | | | | || ||| |||| | ||||| | || || ||||| Sbjct 332 AAAGTTCAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCA---CTTGAGTGA 388 Query 175 AGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACAC 234 || || ||||||||| | |||||| |||||||| || |||| | | ||||| | Sbjct 389 GACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAAGGC 448 Query 235 CAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 || |||||||| ||| |||| || ||| ||| | ||||||| |||||||| Sbjct 449 CAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGTGTGCGAAAGCATGGGGAGC 508 Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||| ||||||||||||||||||||||| |||||||||||||| Sbjct 509 GAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 551 >seq569 Length=4400913 Score = 196 bits (216), Expect = 1e-47 Identities = 282/394 (72%), Gaps = 9/394 (2%) Strand=Plus/Plus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||||||| |||||||||||| ||| | |||||||| | ||| | Sbjct 254649 CGGCTAACTCTGTGCCAGCAACCGCGGTAATACAGAGGATACAAGCGTTATTCTAAATGA 254708 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 |||| ||||| || |||||| | || ||||| | || ||| | |||||||| Sbjct 254709 TTGGGTGTAAAACGTATGTAGGTAGCTT-TTAAGCTTGCTGTCAAATCCCTGGGCTCAAC 254767 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 ||||| || | |||||| |||||||| | | |||||||| |||||| | | Sbjct 254768 CCCGGATAGGCGGTGGAAACTATCAAGCTAGAGTACGGTAGGGGCAAAGGGAATTTCCGG 254827 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 || ||| |||||||||||||| | || | |||||||| |||||| || || ||| Sbjct 254828 TGGAGCAGTGAAATGCGTAGAGACCAGAAAGAACACCAACGGCGAAAGCACTCTGTTGGG 254887 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 | | |||||||||||| |||||| ||||||| || |||||||||||||| |||| Sbjct 254888 CCGACACTGACACTGAGAGGTGAAAGCTAGGGGAGCGAATGGGATTAGATACCCTAGTAG 254947 Query 319 TCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCG----GTGCCG 374 | | | |||||| ||| |||||||| | | ||| || || ||| ||| | Sbjct 254948 TACTAGTTGTAAACAATGGATACTAGG-CACCGTGCGTAT---TGACCCGTGCAGTGTTG 255003 Query 375 CAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||| ||||| ||||||| ||||||||||||| Sbjct 255004 TAGCTAACGCGTTAAGTATCTCACCTGGGGAGTA 255037 >seq23 Length=5704166 Score = 125 bits (138), Expect = 2e-26 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 154 GAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATG 213 |||||| | ||| |||| | ||||||| |||||| || ||| |||||| ||||| Sbjct 2949755 GAAACTACCAAGCTGGAGTATGGTAGGGGCAGAGGGAATTTCTGGTGGAGCGGTAAAATG 2949696 Query 214 CGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTG 273 |||||| || | | ||| |||| || ||| || |||| | | | ||| |||||| Sbjct 2949695 CGTAGAGATCGGAAAGAATACCAACGGTGAAAGCACTCTGCTAGGCCGACACTAACACTG 2949636 Query 274 AGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACG 333 || ||||||| |||||| || ||||||||||||| ||||||| |||||||||| Sbjct 2949635 AGAGGCGAAAGCTAGGGGAGTGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACG 2949576 Query 334 ATGAATACTAGGTG 347 ||| |||||||||| Sbjct 2949575 ATGGATACTAGGTG 2949562 >seq17 Length=1205220 Score = 91.5 bits (100), Expect = 4e-16 Identities = 196/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| |||||| |||| | |||||||| ||| | | |||| ||| ||| | Sbjct 1123175 CGGCTAACTCTGTGCCAACAGCTGTGGTAATACAGAGGATACGAATGTTACCCGAAATGA 1123116 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 | ||||||||| || | ||||| || ||||||| | || ||| |||| ||| Sbjct 1123115 TTAGGCGTAAAGCGTTTGCAGGTGACTTTTTAAGTCTGCCGTCAAATCTCGAGGCTTAAC 1123056 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAG--GGGCAAGTGGAATTCCT 196 || | || | |||||| | |||||||| ||||| |||||| | |||| Sbjct 1123055 CCTAGACAGGCGATGGAAACTACCAAGCTAGAGT--AGGAGACGGGCAAAGGAAATTTTC 1122998 Query 197 AGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTG 256 ||| || ||||||||||||| | || | | |||| ||| | || || |||||| Sbjct 1122997 GGTGGAGTGGTGAAATGCGTAAAGATCAAAAAGAACGCCAACAACAAAAGCACTTTGCTG 1122938 Query 257 GACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGA 307 | | || || |||||| |||||| ||| ||||||| |||| || Sbjct 1122937 GGCCAACACCGATACTGAGAGGCGAAAGTTAGGGAAGCAAACGAGATTCGA 1122887 >seq6345 Length=1336 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 262 TAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCC 321 ||||||||| ||||| |||| || |||| |||||| ||||||||||||||| ||||||| Sbjct 887 TAACTGACATTGAGGGACGAAGGCCTGGGTAGCAAATAGGATTAGATACCCTAGTAGTCC 828 Query 322 ACGCCGTAAACGATGAAT 339 | || | ||| |||||| Sbjct 827 AGGCAGAAAATTATGAAT 810 >seq920 Length=30821 Score = 77.0 bits (84), Expect = 8e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 263 AACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 322 |||||||| ||||| |||| || ||||||||||| |||||||| |||||| ||||||| Sbjct 23071 AACTGACATTGAGGGACGAAGGCTAGGGGAGCAAACCGGATTAGAGACCCTGTTAGTCCA 23130 Query 323 CGCCGTAAACGATGAAT 339 || | ||| |||||| Sbjct 23131 AGCAGAAAATTATGAAT 23147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202762323968