Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq2764 132 9e-29
seq24 118 2e-24
seq3956 113 8e-23
seq77 111 3e-22
seq74 111 3e-22
seq569 98.7 2e-18
seq9242 96.9 6e-18
seq33854 80.6 5e-13
seq134 77.0 6e-12
>seq2764
Length=4463
Score = 132 bits (146), Expect = 9e-29
Identities = 178/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 2334 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 2393
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||||
Sbjct 2394 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 2445
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 2446 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 2503
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 2504 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 2563
Query 249 CCT 251
|||
Sbjct 2564 CCT 2566
>seq24
Length=10012559
Score = 118 bits (130), Expect = 2e-24
Identities = 174/242 (72%), Gaps = 11/242 (5%)
Strand=Plus/Minus
Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70
|||||| ||| ||| | || ||| ||||| ||||||| | | | ||| || ||
Sbjct 3992349 GTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCAACTAAATGCTTCGAGG 3992290
Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130
||| | ||| | | | |||||| ||||| |||||| || |||| ||| | |
Sbjct 3992289 AGTT-GAAAATAAGCGTAGATCCGAAGATTCCCGAATAGGTCAACC------TTTCGAAC 3992237
Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189
||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||||
Sbjct 3992236 --TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTA 3992180
Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249
|| ||||||||||| ||| | ||||||| ||||| | |||||||||||||| |||
Sbjct 3992179 GCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGACGAGCGAAATGGGAGCAGC 3992120
Query 250 CT 251
||
Sbjct 3992119 CT 3992118
>seq3956
Length=4762
Score = 113 bits (124), Expect = 8e-23
Identities = 91/109 (83%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68
||||||||||||||||| | | |||||||||||||||| ||| |||||||||| | ||
Sbjct 1905 TGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCGGGG 1964
Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117
|||| || |||| ||||||||| | ||| |||||||||||||||||
Sbjct 1965 GGAG-CCGCGAACAGGCTTTGATCCCCGGATCTCCGAATGGGGAAACCC 2012
Score = 86.0 bits (94), Expect = 1e-14
Identities = 82/101 (81%), Gaps = 3/101 (3%)
Strand=Plus/Plus
Query 139 CTGAATACATAGGTATGCAAAG-CGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197
|||||| ||||||| | ||||| ||||| || |||||||||||||| |||| | |||
Sbjct 2116 CTGAATCCATAGGT-TCCAAAGGCGAACCGGGGGAACTGAAACATCTCAGTACCCCGAGG 2174
Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238
||| || ||||| ||||| ||| ||||||||||||||||
Sbjct 2175 AAAGGACATCAA-CGAGACTCCGTCAGTAGTGGCGAGCGAA 2214
>seq77
Length=8408033
Score = 111 bits (122), Expect = 3e-22
Identities = 168/236 (71%), Gaps = 11/236 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| | ||||| ||| | ||| ||||
Sbjct 2151708 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCATAGTAAGCGACGAAATGCTTCGGG 2151767
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| ||| |
Sbjct 2151768 GAGTT-GAAAATAAGCGTAGATCCGAAGATTCCCGAATAGGTCAACC------TTTCGAA 2151820
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| | |||| ||| ||| ||| |||| || ||| ||||||||||||||||| |||
Sbjct 2151821 CTGT---TGCTAAATCCATGAGTAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 2151877
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
||| ||||||||||| ||| | ||||||| ||||| | ||||||||||||||
Sbjct 2151878 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGACGAGCGAAATGGGA 2151933
>seq74
Length=10145792
Score = 111 bits (122), Expect = 3e-22
Identities = 173/243 (71%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| || || ||| ||||| ||||||| ||| | ||| || |
Sbjct 510883 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGAG 510824
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | |||| | ||||| || ||| || |||| ||| |
Sbjct 510823 GAGTT-GAAAATAAGTGTAGATCTGGAGATTCCCAAATAGGTCAACC------TTTCGAA 510771
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| |||| |||||||||||| |||
Sbjct 510770 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGTACTGAAACATCTTAGT 510714
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| || | ||||||| ||||| |||||||||||||||| ||
Sbjct 510713 AGCCAGAGGAAAAGAAAGTAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAACAG 510654
Query 249 CCT 251
|||
Sbjct 510653 CCT 510651
>seq569
Length=4400913
Score = 98.7 bits (108), Expect = 2e-18
Identities = 92/116 (79%), Gaps = 1/116 (1%)
Strand=Plus/Plus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||| ||| ||| || | |||| || ||| ||||||||||||||||| |||||| |
Sbjct 258228 TGCTAAATCCATGGGCAAGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGA 258287
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
|||||| ||| ||| | ||||||| ||||| |||||||||||||||| |||||
Sbjct 258288 GGAAAATAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 258343
>seq9242
Length=5984466
Score = 96.9 bits (106), Expect = 6e-18
Identities = 171/245 (70%), Gaps = 11/245 (4%)
Strand=Plus/Minus
Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67
||||||||| ||| ||| || || ||| ||||| |||||| ||| | ||| ||
Sbjct 618403 ATGGTGGATACCTAGGCACCTAGAGACGAGGAAGGGTGTAGTAAGCGACGAAATGCTTCG 618344
Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127
||||| | ||| | | ||| | ||||| | |||| || || | ||| |
Sbjct 618343 AGGAGTT-GAAAATAAGTGTAGATTTGGAGATTCCTGAATAGGTCAATC------TTTCG 618291
Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186
| ||| |||||||| | | || |||| || ||| ||||||||||||||||| |
Sbjct 618290 AAC--TGC-TGCTGAATCCTTGGGCGGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 618234
Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246
|||||| ||||||||||| ||| | |||||| ||||| |||||||||||||| |
Sbjct 618233 GTAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCGGCGAGCGAAATGGAAGC 618174
Query 247 AGCCT 251
|||||
Sbjct 618173 AGCCT 618169
>seq33854
Length=1984
Score = 80.6 bits (88), Expect = 5e-13
Identities = 64/77 (83%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228
|||||||||||||||| ||||||| ||||| |||||||||||||| ||| |||||
Sbjct 1829 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 1770
Query 229 GGCGAGCGAAATGGGAT 245
||||||||| | ||||
Sbjct 1769 GGCGAGCGAGAGCGGAT 1753
>seq134
Length=15115857
Score = 77.0 bits (84), Expect = 6e-12
Identities = 82/107 (77%), Gaps = 1/107 (1%)
Strand=Plus/Plus
Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197
|||||| ||| |||| |||| || || ||||||||||||| || |||||| | |
Sbjct 3252397 CTGAATCCATGGGTAGGCAAGAGACAATCTGGCGAACTGAAACGCCTTAGTAGCCAAAAG 3252456
Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|||||||| ||| | |||||| | ||| ||||||||||||||||
Sbjct 3252457 AAAAGAAAGCAAAAGCAATTCCCGTAATAGCGGCGAGCGAAATGGGA 3252503
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918065922816
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |