Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq2764 132 9e-29 seq24 118 2e-24 seq3956 113 8e-23 seq77 111 3e-22 seq74 111 3e-22 seq569 98.7 2e-18 seq9242 96.9 6e-18 seq33854 80.6 5e-13 seq134 77.0 6e-12 >seq2764 Length=4463 Score = 132 bits (146), Expect = 9e-29 Identities = 178/243 (73%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| |||| Sbjct 2334 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 2393 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| |||| Sbjct 2394 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTTAACCT-----TTTGA-- 2445 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| ||| Sbjct 2446 -ACTGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 2503 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 2504 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 2563 Query 249 CCT 251 ||| Sbjct 2564 CCT 2566 >seq24 Length=10012559 Score = 118 bits (130), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 11 GTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGG 70 |||||| ||| ||| | || ||| ||||| ||||||| | | | ||| || || Sbjct 3992349 GTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCAACTAAATGCTTCGAGG 3992290 Query 71 AGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTC 130 ||| | ||| | | | |||||| ||||| |||||| || |||| ||| | | Sbjct 3992289 AGTT-GAAAATAAGCGTAGATCCGAAGATTCCCGAATAGGTCAACC------TTTCGAAC 3992237 Query 131 ATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTA 189 ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||| Sbjct 3992236 --TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTA 3992180 Query 190 GCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGC 249 || ||||||||||| ||| | ||||||| ||||| | |||||||||||||| ||| Sbjct 3992179 GCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGACGAGCGAAATGGGAGCAGC 3992120 Query 250 CT 251 || Sbjct 3992119 CT 3992118 >seq3956 Length=4762 Score = 113 bits (124), Expect = 8e-23 Identities = 91/109 (83%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 9 TGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGG 68 ||||||||||||||||| | | |||||||||||||||| ||| |||||||||| | || Sbjct 1905 TGGTGGATGCCTTGGCGCTGAGAGGCGATGAAGGACGTGGTACGCTGCGATAAGCCGGGG 1964 Query 69 GGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC 117 |||| || |||| ||||||||| | ||| ||||||||||||||||| Sbjct 1965 GGAG-CCGCGAACAGGCTTTGATCCCCGGATCTCCGAATGGGGAAACCC 2012 Score = 86.0 bits (94), Expect = 1e-14 Identities = 82/101 (81%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAAAG-CGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| ||||||| | ||||| ||||| || |||||||||||||| |||| | ||| Sbjct 2116 CTGAATCCATAGGT-TCCAAAGGCGAACCGGGGGAACTGAAACATCTCAGTACCCCGAGG 2174 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAA 238 ||| || ||||| ||||| ||| |||||||||||||||| Sbjct 2175 AAAGGACATCAA-CGAGACTCCGTCAGTAGTGGCGAGCGAA 2214 >seq77 Length=8408033 Score = 111 bits (122), Expect = 3e-22 Identities = 168/236 (71%), Gaps = 11/236 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| | || ||| ||||| | ||||| ||| | ||| |||| Sbjct 2151708 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCATAGTAAGCGACGAAATGCTTCGGG 2151767 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | | |||||| ||||| |||||| || |||| ||| | Sbjct 2151768 GAGTT-GAAAATAAGCGTAGATCCGAAGATTCCCGAATAGGTCAACC------TTTCGAA 2151820 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | |||| ||| ||| ||| |||| || ||| ||||||||||||||||| ||| Sbjct 2151821 CTGT---TGCTAAATCCATGAGTAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 2151877 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 ||| ||||||||||| ||| | ||||||| ||||| | |||||||||||||| Sbjct 2151878 AGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAGCGACGAGCGAAATGGGA 2151933 >seq74 Length=10145792 Score = 111 bits (122), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||| ||||| ||||||| ||| | ||| || | Sbjct 510883 GGTGGATACCTAGGCACCTAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGAG 510824 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||| | | |||| | ||||| || ||| || |||| ||| | Sbjct 510823 GAGTT-GAAAATAAGTGTAGATCTGGAGATTCCCAAATAGGTCAACC------TTTCGAA 510771 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | ||| |||||||| ||| || | |||| || ||| |||| |||||||||||| ||| Sbjct 510770 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGTACTGAAACATCTTAGT 510714 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| ||||||||||| || | ||||||| ||||| |||||||||||||||| || Sbjct 510713 AGCCAGAGGAAAAGAAAGTAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAACAG 510654 Query 249 CCT 251 ||| Sbjct 510653 CCT 510651 >seq569 Length=4400913 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195 |||| ||| ||| || | |||| || ||| ||||||||||||||||| |||||| | Sbjct 258228 TGCTAAATCCATGGGCAAGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGA 258287 Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251 |||||| ||| ||| | ||||||| ||||| |||||||||||||||| ||||| Sbjct 258288 GGAAAATAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCT 258343 >seq9242 Length=5984466 Score = 96.9 bits (106), Expect = 6e-18 Identities = 171/245 (70%), Gaps = 11/245 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 ||||||||| ||| ||| || || ||| ||||| |||||| ||| | ||| || Sbjct 618403 ATGGTGGATACCTAGGCACCTAGAGACGAGGAAGGGTGTAGTAAGCGACGAAATGCTTCG 618344 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGG 127 ||||| | ||| | | ||| | ||||| | |||| || || | ||| | Sbjct 618343 AGGAGTT-GAAAATAAGTGTAGATTTGGAGATTCCTGAATAGGTCAATC------TTTCG 618291 Query 128 GTCATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAA 186 | ||| |||||||| | | || |||| || ||| ||||||||||||||||| | Sbjct 618290 AAC--TGC-TGCTGAATCCTTGGGCGGGCAAGAGACAACCTGGCGAACTGAAACATCTTA 618234 Query 187 GTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATG 246 |||||| ||||||||||| ||| | |||||| ||||| |||||||||||||| | Sbjct 618233 GTAGCTAGAGGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGCGGCGAGCGAAATGGAAGC 618174 Query 247 AGCCT 251 ||||| Sbjct 618173 AGCCT 618169 >seq33854 Length=1984 Score = 80.6 bits (88), Expect = 5e-13 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| Sbjct 1829 GCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGAAATCAACCGAGACTCCGTTAGTAGC 1770 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 1769 GGCGAGCGAGAGCGGAT 1753 >seq134 Length=15115857 Score = 77.0 bits (84), Expect = 6e-12 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 139 CTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||| ||| |||| |||| || || ||||||||||||| || |||||| | | Sbjct 3252397 CTGAATCCATGGGTAGGCAAGAGACAATCTGGCGAACTGAAACGCCTTAGTAGCCAAAAG 3252456 Query 198 AAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244 |||||||| ||| | |||||| | ||| |||||||||||||||| Sbjct 3252457 AAAAGAAAGCAAAAGCAATTCCCGTAATAGCGGCGAGCGAAATGGGA 3252503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918065922816