Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 206 9e-51
seq31330 190 7e-46
seq24 161 3e-37
seq2764 150 6e-34
seq652 129 2e-27
seq35146 127 7e-27
seq569 127 7e-27
seq16029 118 4e-24
seq74 116 1e-23
seq276 107 7e-21
seq28361 102 3e-19
seq18 80.6 9e-13
>seq3956
Length=4762
Score = 206 bits (228), Expect = 9e-51
Identities = 201/259 (78%), Gaps = 21/259 (8%)
Strand=Plus/Minus
Query 306 CTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTG 365
|||| |||| |||| ||| | ||||||| || | ||| ||||||||| | || ||
Sbjct 3997 CTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGACTTCAATTTCACTGAGC-TG 3939
Query 366 TGGTTG-AGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 424
|||| ||||||| ||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 3938 ACGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 3879
Query 425 GGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTA 484
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||
Sbjct 3878 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATT- 3820
Query 485 CCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAG 544
| | ||| ||| || ||||||| ||||||| |||||||||||
Sbjct 3819 CGGGGCTCTCACTCC------------------TCCTCTTGACCTTCCGGCACCGGGCAG 3778
Query 545 GCGTCAGTCCGTATACCTC 563
||||||| || ||||| ||
Sbjct 3777 GCGTCAGACCCTATACGTC 3759
Score = 98.7 bits (108), Expect = 3e-18
Identities = 113/148 (76%), Gaps = 3/148 (2%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59
||||| ||| |||||||||||| || ||| ||| || ||||| || ||| |||| |
Sbjct 4299 TCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGACC-GATTTC 4241
Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
| ||| | ||||| ||| | | ||||||||||||| ||||||| ||| |||||||||
Sbjct 4240 CGACCGGTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCA 4182
Query 120 GTTAAACTACCCACCAGGCACTGTCCCC 147
|| ||||| || ||| |||| ||| ||
Sbjct 4181 GTCAAACTGCCTGCCATGCACGGTCTCC 4154
>seq31330
Length=2953
Score = 190 bits (210), Expect = 7e-46
Identities = 294/414 (71%), Gaps = 22/414 (5%)
Strand=Plus/Plus
Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135
||||| | | |||||||||| ||| ||||| || ||||||||| |||||||||||||
Sbjct 2218 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 2276
Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190
||| |||||| | ||| || || || || |||||| |||| | |||
Sbjct 2277 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 2336
Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250
||||| ||||| | | || | | ||| | || | |||||||||
Sbjct 2337 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 2381
Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309
||||||||| | | || || | | |||||||||| ||||| | |||||||||
Sbjct 2382 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTC 2441
Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369
|||| |||| | | ||||||| || | | ||||||||||||| | ||
Sbjct 2442 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 2501
Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429
|||||||| ||| ||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 2502 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 2561
Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
||||||||||||||| |||| |||||| ||||||||||| |||||||| |||
Sbjct 2562 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT 2615
>seq24
Length=10012559
Score = 161 bits (178), Expect = 3e-37
Identities = 384/569 (67%), Gaps = 21/569 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || |
Sbjct 3987862 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCT 3987921
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
|| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 3987922 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 3987980
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 3987981 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 3988040
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGC--GTGGCCGCATC 235
| | ||||||||||| ||| | | ||| || || | | |||| ||
Sbjct 3988041 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCTGGAAGGAGGCCT--TC 3988098
Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293
| | || ||||||| || | || || || | || |||||| ||| | | ||| |
Sbjct 3988099 TTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTAA 3988156
Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352
|| | | |||||||| || | || | | ||||||| || | | ||
Sbjct 3988157 AGCTTCATAGGGTCTTTCTATCTAGGTGCAGGTAGTCCGCATCTTCACAAACATGTCTAT 3988216
Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411
|||| || | | | ||||||| | || |||||||||| ||||||| |||||||
Sbjct 3988217 TTCATCGAGTTTCTCTCGGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 3988275
Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 3988276 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCATC 3988335
Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531
|||||||| | ||| ||| || || | | |||| | ||| ||||||
Sbjct 3988336 GGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTC 3988389
Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| |||| ||||||||||||| || ||||
Sbjct 3988390 CGGCACTGGGCAGGCGTCAGCCCCCATAC 3988418
>seq2764
Length=4463
Score = 150 bits (166), Expect = 6e-34
Identities = 214/296 (72%), Gaps = 9/296 (3%)
Strand=Plus/Minus
Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325
|| || |||||| ||| | | ||||||| | | |||||||| |||| | || |
Sbjct 4382 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGT 4323
Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG 385
| ||||||| || | | ||||||||| |||| | ||||||| | ||
Sbjct 4322 AGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAG 4264
Query 386 -TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4263 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4204
Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTG 504
||||||||||| |||||||| || |||||||| | ||| ||| || ||
Sbjct 4203 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTC 4150
Query 505 GTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| | |||| | ||||||||||| |||| ||||||||||||| || ||||
Sbjct 4149 ATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 4094
>seq652
Length=2384379
Score = 129 bits (142), Expect = 2e-27
Identities = 381/571 (67%), Gaps = 26/571 (5%)
Strand=Plus/Minus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || ||||| |||||||||||||||| ||| || |||||| | | | |
Sbjct 212958 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCAAGGG-TCAATCTC 212900
Query 61 AACCAGGCT-GAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119
|||||| |||| |||||||| ||||||| ||| |||||||| | | || || |
Sbjct 212899 TGTCAGGCTCGAGGAAACCTTTGCATGCCTCCGCTACCTTTTGGGAAGCCTACGCCCATA 212840
Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATAT 176
| ||||| | || | || ||||| | || || || |||||||||| |
Sbjct 212839 G--AAACTGTCTACTTGAGACCGTCCCTTGGCTCGTAGGTCTTGACACAAGGTTAGAATT 212782
Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCA 233
| | | | |||||||||| ||| || | ||| | | || || | ||||
Sbjct 212781 CTAGCTCTTTTAGAGTGGTATCTCATTAATGGCTCGGGCCCCCCCGGAAG-GAGGCCT-- 212725
Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293
|| | | | ||||||| || ||| || || |||||| ||| | ||||| |
Sbjct 212724 TCTTCGCGTTCCACCTAAGCTGTGCAAGAAAGGCCTAAAGCCAATCCCAGGGAATAGTAA 212665
Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTAC-TG-CA 350
| | | |||||||| ||| | | | | |||||||||| ||| || |
Sbjct 212664 ATCTTCATAGGGTCTTTCTATCCAGGTGTAGGTAGTCCGCATCTTTACA--TACATGTCT 212607
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410
||||||||| | | | |||||||| | |||||||||| ||||||| ||||||
Sbjct 212606 ATTTCACCGAGTTTCTCTCTGAGACAGTGCTCAAATCGTTACGCCTTTCGTGCGGGTCGG 212547
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||||||||||||||||| |||| |||||| ||||||||| |||||||| ||
Sbjct 212546 AACTTACCCGACAAGGAATTTCACTACTTTAGGACCATTATAGTTATAGCCGCCGTTCAC 212487
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTC-ACGAGTCCTCTTAACCT 529
|||||||| | || ||| || || | | || || | | | ||||||||
Sbjct 212486 CGGGGCTTC-GGTCGTCGGCTC-----CCCTGTCATCAGGTCAACAACTTC-CTTAACCT 212434
Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| | |||| |||||||||||| || |||||
Sbjct 212433 TTCGGCACTGGGCAGGCGTCAACCCCTATAC 212403
>seq35146
Length=11046
Score = 127 bits (140), Expect = 7e-27
Identities = 91/105 (87%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 379 AGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438
|| ||| |||||||||| ||| ||| |||| ||||||||| |||||||||||||||||||
Sbjct 5034 AGTGGAATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 4975
Query 439 TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483
|| |||| ||| ||||||| |||||||| ||| |||||||||||
Sbjct 4974 TTTGGATCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATT 4930
>seq569
Length=4400913
Score = 127 bits (140), Expect = 7e-27
Identities = 134/175 (77%), Gaps = 6/175 (3%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 260087 TCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGTTACCTTAGAAC 260028
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505
|||||||||| ||||||||||| | |||||| | | ||| ||| || ||
Sbjct 260027 CTTTATAGTTACGGCCGCCGTTTACCGAGGCTTC-AGTCGCCGGCTC-----CCCTGTTA 259974
Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
| | |||| | ||| ||||||| |||| ||||||||||||| || ||||
Sbjct 259973 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 259919
>seq16029
Length=140
Score = 118 bits (130), Expect = 4e-24
Identities = 113/141 (80%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 286 TATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGT 344
|| ||| ||||| | |||||||||| |||| |||| ||| | ||||||| || |
Sbjct 1 TACAGTAAAGGTGCACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGG 60
Query 345 ACTGCAATTTCACCGGGCCTGTGGTTG-AGACAGCAGGGGAGTCGTTACGCCATTCGTGC 403
| | ||||||||| | || || |||| ||||||| ||| |||| |||||||||||||||
Sbjct 61 AATTCAATTTCACTGAGC-TGACGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGC 119
Query 404 AGGTCGGAACTTACCCGACAA 424
|||||||||||||||||||||
Sbjct 120 AGGTCGGAACTTACCCGACAA 140
>seq74
Length=10145792
Score = 116 bits (128), Expect = 1e-23
Identities = 82/94 (87%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||
Sbjct 508906 TCGTTACGCCTTTCGTGCGGGTTGGAACTTACCCGACAAGGAATTTCACTACCTTAGGAC 508965
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||| ||| |||| || |||||||
Sbjct 508966 CGTTATAGTTACAGCCGTCGTTCACCAGGGCTTC 508999
>seq276
Length=2778623
Score = 107 bits (118), Expect = 7e-21
Identities = 80/94 (85%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||| ||| |||| ||||||||||||||||||||||| ||||||||||
Sbjct 1912583 TCGTTACGCCTTTCATGCTGGTCAGAACTTACCCGACAAGGAATTTCATTACCTTAGGAC 1912524
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
||||||||||| |||| || || ||||||||
Sbjct 1912523 CGTTATAGTTACGGTCGCCATTCACCGGGGCTTC 1912490
>seq28361
Length=1991474
Score = 102 bits (112), Expect = 3e-19
Identities = 70/79 (89%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460
||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |
Sbjct 604026 TGCGGGTCGGAACTTACCCGACAAGGAATTTCACTATCTTAGGACCGTTATAGTTACGGC 604085
Query 461 CGCCGTTTACTGGGGCTTC 479
||||||| || ||||||||
Sbjct 604086 CGCCGTTCACCGGGGCTTC 604104
>seq18
Length=12238210
Score = 80.6 bits (88), Expect = 9e-13
Identities = 73/92 (79%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| || ||| ||||| ||||| ||| || ||||||||||||||||||
Sbjct 1281707 TCGTTACGCCTATCATGCGGGTCGAAACTTCGGCGATAATAAATTTCGCTACCTTAGGAC 1281766
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCT 477
|||||||||| |||| || |||||||||
Sbjct 1281767 TGTTATAGTTATGGTCGCCATTCACTGGGGCT 1281798
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1701780734976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |