Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3956 206 9e-51 seq31330 190 7e-46 seq24 161 3e-37 seq2764 150 6e-34 seq652 129 2e-27 seq35146 127 7e-27 seq569 127 7e-27 seq16029 118 4e-24 seq74 116 1e-23 seq276 107 7e-21 seq28361 102 3e-19 seq18 80.6 9e-13 >seq3956 Length=4762 Score = 206 bits (228), Expect = 9e-51 Identities = 201/259 (78%), Gaps = 21/259 (8%) Strand=Plus/Minus Query 306 CTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTG 365 |||| |||| |||| ||| | ||||||| || | ||| ||||||||| | || || Sbjct 3997 CTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGGACTTCAATTTCACTGAGC-TG 3939 Query 366 TGGTTG-AGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 424 |||| ||||||| ||| |||| |||||||||||||||||||||||||||||||||||| Sbjct 3938 ACGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 3879 Query 425 GGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTA 484 |||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||| Sbjct 3878 GGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATT- 3820 Query 485 CCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAG 544 | | ||| ||| || ||||||| ||||||| ||||||||||| Sbjct 3819 CGGGGCTCTCACTCC------------------TCCTCTTGACCTTCCGGCACCGGGCAG 3778 Query 545 GCGTCAGTCCGTATACCTC 563 ||||||| || ||||| || Sbjct 3777 GCGTCAGACCCTATACGTC 3759 Score = 98.7 bits (108), Expect = 3e-18 Identities = 113/148 (76%), Gaps = 3/148 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||| ||| |||||||||||| || ||| ||| || ||||| || ||| |||| | Sbjct 4299 TCGACATGTCCGTCTCGCAGTCAGGCAGGCTTATGCCATTGCACTCGACGACC-GATTTC 4241 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| | ||||| ||| | | ||||||||||||| ||||||| ||| ||||||||| Sbjct 4240 CGACCGGTCTGAGCCTACCATCGCGCGCCTCCGTTACTCTTTGGGA-GGCGACCGCCCCA 4182 Query 120 GTTAAACTACCCACCAGGCACTGTCCCC 147 || ||||| || ||| |||| ||| || Sbjct 4181 GTCAAACTGCCTGCCATGCACGGTCTCC 4154 >seq31330 Length=2953 Score = 190 bits (210), Expect = 7e-46 Identities = 294/414 (71%), Gaps = 22/414 (5%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||| | | |||||||||| ||| ||||| || ||||||||| ||||||||||||| Sbjct 2218 ACCTTCGCACACCTCCGTTACTCTTTAGGAGG-CATCCGCCCCAGATAAACTACCCACCT 2276 Query 136 GGCACTGTCCC--CAACCCAGA--TCATGG-GCCAAGGTTAGATATCCACTACGGTCAGA 190 ||| |||||| | ||| || || || || |||||| |||| | ||| Sbjct 2277 CGCAGTGTCCCGCCCCCCCCGAATTCTCGGTGCGGCGGTTAGGCATCCTTAGACGAAAGA 2336 Query 191 GTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCTCCCACCTA 250 ||||| ||||| | | || | | ||| | || | ||||||||| Sbjct 2337 GTGGTCTTTCAGGATTGG-TCG--------TTGTGTGTCACCACC------TCCCACCTA 2381 Query 251 TCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTT 309 ||||||||| | | || || | | |||||||||| ||||| | ||||||||| Sbjct 2382 TCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCACGGGGTCTTC 2441 Query 310 TCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| |||| | | ||||||| || | | ||||||||||||| | || Sbjct 2442 CCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTC 2501 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| ||| ||||||||| |||||||||||||||| ||||| ||||||||||| Sbjct 2502 GGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAAT 2561 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 ||||||||||||||| |||| |||||| ||||||||||| |||||||| ||| Sbjct 2562 TTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATT 2615 >seq24 Length=10012559 Score = 161 bits (178), Expect = 3e-37 Identities = 384/569 (67%), Gaps = 21/569 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || | Sbjct 3987862 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCT 3987921 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 || | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 3987922 GTCCGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 3987980 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 3987981 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 3988040 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGC--GTGGCCGCATC 235 | | ||||||||||| ||| | | ||| || || | | |||| || Sbjct 3988041 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCTGGAAGGAGGCCT--TC 3988098 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | || ||||||| || | || || || | || |||||| ||| | | ||| | Sbjct 3988099 TTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTAA 3988156 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| || | || | | ||||||| || | | || Sbjct 3988157 AGCTTCATAGGGTCTTTCTATCTAGGTGCAGGTAGTCCGCATCTTCACAAACATGTCTAT 3988216 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGA 411 |||| || | | | ||||||| | || |||||||||| ||||||| ||||||| Sbjct 3988217 TTCATCGAGTTTCTCTCGGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGA 3988275 Query 412 ACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACT 471 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | Sbjct 3988276 ACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCATC 3988335 Query 472 GGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTC 531 |||||||| | ||| ||| || || | | |||| | ||| |||||| Sbjct 3988336 GGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTTC 3988389 Query 532 CAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | |||| ||||||||||||| || |||| Sbjct 3988390 CGGCACTGGGCAGGCGTCAGCCCCCATAC 3988418 >seq2764 Length=4463 Score = 150 bits (166), Expect = 6e-34 Identities = 214/296 (72%), Gaps = 9/296 (3%) Strand=Plus/Minus Query 267 CCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGA 325 || || |||||| ||| | | ||||||| | | |||||||| |||| | || | Sbjct 4382 CCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGT 4323 Query 326 AACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG 385 | ||||||| || | | ||||||||| |||| | ||||||| | || Sbjct 4322 AGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAG 4264 Query 386 -TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 444 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4263 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 4204 Query 445 TGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTG 504 ||||||||||| |||||||| || |||||||| | ||| ||| || || Sbjct 4203 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTC-GGTCGCCGGCTC-----CCCTGTC 4150 Query 505 GTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||||||||||| |||| ||||||||||||| || |||| Sbjct 4149 ATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 4094 >seq652 Length=2384379 Score = 129 bits (142), Expect = 2e-27 Identities = 381/571 (67%), Gaps = 26/571 (5%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || ||||| |||||||||||||||| ||| || |||||| | | | | Sbjct 212958 TCGACGGGTGAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCAAGGG-TCAATCTC 212900 Query 61 AACCAGGCT-GAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 |||||| |||| |||||||| ||||||| ||| |||||||| | | || || | Sbjct 212899 TGTCAGGCTCGAGGAAACCTTTGCATGCCTCCGCTACCTTTTGGGAAGCCTACGCCCATA 212840 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATAT 176 | ||||| | || | || ||||| | || || || |||||||||| | Sbjct 212839 G--AAACTGTCTACTTGAGACCGTCCCTTGGCTCGTAGGTCTTGACACAAGGTTAGAATT 212782 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCA 233 | | | | |||||||||| ||| || | ||| | | || || | |||| Sbjct 212781 CTAGCTCTTTTAGAGTGGTATCTCATTAATGGCTCGGGCCCCCCCGGAAG-GAGGCCT-- 212725 Query 234 TCATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 || | | | ||||||| || ||| || || |||||| ||| | ||||| | Sbjct 212724 TCTTCGCGTTCCACCTAAGCTGTGCAAGAAAGGCCTAAAGCCAATCCCAGGGAATAGTAA 212665 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTAC-TG-CA 350 | | | |||||||| ||| | | | | |||||||||| ||| || | Sbjct 212664 ATCTTCATAGGGTCTTTCTATCCAGGTGTAGGTAGTCCGCATCTTTACA--TACATGTCT 212607 Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410 ||||||||| | | | |||||||| | |||||||||| ||||||| |||||| Sbjct 212606 ATTTCACCGAGTTTCTCTCTGAGACAGTGCTCAAATCGTTACGCCTTTCGTGCGGGTCGG 212547 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||| |||| |||||| ||||||||| |||||||| || Sbjct 212546 AACTTACCCGACAAGGAATTTCACTACTTTAGGACCATTATAGTTATAGCCGCCGTTCAC 212487 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTC-ACGAGTCCTCTTAACCT 529 |||||||| | || ||| || || | | || || | | | |||||||| Sbjct 212486 CGGGGCTTC-GGTCGTCGGCTC-----CCCTGTCATCAGGTCAACAACTTC-CTTAACCT 212434 Query 530 TCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| |||||||||||| || ||||| Sbjct 212433 TTCGGCACTGGGCAGGCGTCAACCCCTATAC 212403 >seq35146 Length=11046 Score = 127 bits (140), Expect = 7e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 379 AGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 438 || ||| |||||||||| ||| ||| |||| ||||||||| ||||||||||||||||||| Sbjct 5034 AGTGGAATCGTTACGCCTTTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 4975 Query 439 TTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATT 483 || |||| ||| ||||||| |||||||| ||| ||||||||||| Sbjct 4974 TTTGGATCGTTCTAGTTACGGCCGCCGTTCACTCGGGCTTCAATT 4930 >seq569 Length=4400913 Score = 127 bits (140), Expect = 7e-27 Identities = 134/175 (77%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| |||||| ||||||||||||||||||||||||||||| |||||||| | Sbjct 260087 TCGTTACGCCTTTCGTGTGGGTCGGAACTTACCCGACAAGGAATTTCGTTACCTTAGAAC 260028 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 |||||||||| ||||||||||| | |||||| | | ||| ||| || || Sbjct 260027 CTTTATAGTTACGGCCGCCGTTTACCGAGGCTTC-AGTCGCCGGCTC-----CCCTGTTA 259974 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||| ||||||| |||| ||||||||||||| || |||| Sbjct 259973 TCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 259919 >seq16029 Length=140 Score = 118 bits (130), Expect = 4e-24 Identities = 113/141 (80%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 286 TATAGTGAAGGTCC-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGT 344 || ||| ||||| | |||||||||| |||| |||| ||| | ||||||| || | Sbjct 1 TACAGTAAAGGTGCACGGGGTCTTTCCGTCTGACCGCAGGAACCCCGCATCTTCACGGGG 60 Query 345 ACTGCAATTTCACCGGGCCTGTGGTTG-AGACAGCAGGGGAGTCGTTACGCCATTCGTGC 403 | | ||||||||| | || || |||| ||||||| ||| |||| ||||||||||||||| Sbjct 61 AATTCAATTTCACTGAGC-TGACGTTGGAGACAGCGGGGAAGTCATTACGCCATTCGTGC 119 Query 404 AGGTCGGAACTTACCCGACAA 424 ||||||||||||||||||||| Sbjct 120 AGGTCGGAACTTACCCGACAA 140 >seq74 Length=10145792 Score = 116 bits (128), Expect = 1e-23 Identities = 82/94 (87%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||||||| Sbjct 508906 TCGTTACGCCTTTCGTGCGGGTTGGAACTTACCCGACAAGGAATTTCACTACCTTAGGAC 508965 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| ||| |||| || ||||||| Sbjct 508966 CGTTATAGTTACAGCCGTCGTTCACCAGGGCTTC 508999 >seq276 Length=2778623 Score = 107 bits (118), Expect = 7e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||| ||| |||| ||||||||||||||||||||||| |||||||||| Sbjct 1912583 TCGTTACGCCTTTCATGCTGGTCAGAACTTACCCGACAAGGAATTTCATTACCTTAGGAC 1912524 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| |||| || || |||||||| Sbjct 1912523 CGTTATAGTTACGGTCGCCATTCACCGGGGCTTC 1912490 >seq28361 Length=1991474 Score = 102 bits (112), Expect = 3e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 401 TGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCAC 460 ||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| | Sbjct 604026 TGCGGGTCGGAACTTACCCGACAAGGAATTTCACTATCTTAGGACCGTTATAGTTACGGC 604085 Query 461 CGCCGTTTACTGGGGCTTC 479 ||||||| || |||||||| Sbjct 604086 CGCCGTTCACCGGGGCTTC 604104 >seq18 Length=12238210 Score = 80.6 bits (88), Expect = 9e-13 Identities = 73/92 (79%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| || ||| ||||| ||||| ||| || |||||||||||||||||| Sbjct 1281707 TCGTTACGCCTATCATGCGGGTCGAAACTTCGGCGATAATAAATTTCGCTACCTTAGGAC 1281766 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 |||||||||| |||| || ||||||||| Sbjct 1281767 TGTTATAGTTATGGTCGCCATTCACTGGGGCT 1281798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701780734976