Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq3956 190 4e-46 seq74 107 4e-21 seq35238 102 2e-19 seq57 102 2e-19 seq86 96.9 7e-18 seq652 89.7 1e-15 seq569 86.0 1e-14 >seq3956 Length=4762 Score = 190 bits (210), Expect = 4e-46 Identities = 166/205 (81%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || || || ||||| |||||| | ||||||| |||| || Sbjct 216 AAAGAGCTTTACAACCCTAAGG-CCGTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 158 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 157 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 98 Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261 ||||||||| | || |||||||||| | ||||| ||||| | | |||||||||||| Sbjct 97 CCCAATGTGGCTGGCCATCCTCTCAGACCAGCTATCGATCGTCGCCATGGTGGGCCGTTA 38 Query 262 CCCCGCCTACTACCTAATGGAACGC 286 ||||||| | | ||||| |||||| Sbjct 37 CCCCGCCATCCAGCTAATCGAACGC 13 >seq74 Length=10145792 Score = 107 bits (118), Expect = 4e-21 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | |||| | ||||| ||| ||| | | | ||| |||| || Sbjct 514397 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACACGGCATTGCTCCATCAGGCTT 514455 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| |||||||||||||| ||||||| ||| ||||||||||| Sbjct 514456 TCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAG 514515 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || | Sbjct 514516 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTAAT 514575 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 514576 GCCTCACCAACTAGCTAAT 514594 >seq35238 Length=927 Score = 102 bits (112), Expect = 2e-19 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 169 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 110 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 109 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 50 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 ||| | ||| |||| | |||| ||| ||| ||||| Sbjct 49 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 11 >seq57 Length=727578 Score = 102 bits (112), Expect = 2e-19 Identities = 141/196 (72%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 84 AGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143 |||||||||||| ||| || |||| ||| || || | | ||| |||| || ||| Sbjct 288459 AGAAGTTTACAACTCGT-GAGCCTTTTACCTCCATGCAGCATTGCTCCGTCAGGCTTTCG 288401 Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203 |||||| || |||||||| |||| |||||| ||||||| ||| |||||||||||||| Sbjct 288400 CCCATTGTAGAAAATTCCTCATTGCTACCTCCCTTAGGAGTCTGGGCCGTGTCTCAGTTC 288341 Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263 | ||||| | | |||||| || | |||| ||| | | || ||| || || || Sbjct 288340 TAGTGTGGCTTATCATCCTCTTGGATCAACTATTGATCATCGTCTTGGTAAGCTATTGCC 288281 Query 264 CCGCCTACTACCTAAT 279 ||| |||| ||||| Sbjct 288280 TTGCCAACTAGCTAAT 288265 >seq86 Length=7715951 Score = 96.9 bits (106), Expect = 7e-18 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || | | |||||| || || || ||||||||||||||||||| |||||| ||| Sbjct 6354733 TCAGGCTTTTGCCCATTGCGAAAAATACCCCACTGCTGCCTCCCGTAGGTGTTTGGGCCG 6354792 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| ||||||||| || | |||||||||| Sbjct 6354793 TGTCTCAGTCCCAATGTGGTTGATCATCCTCTCAGA 6354828 >seq652 Length=2384379 Score = 89.7 bits (98), Expect = 1e-15 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||||| | || | ||| ||||| | | || |||| || Sbjct 207578 AAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGCGGCATTACTCTGTCAGGCTT 207520 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 | | |||||| || ||||| |||||||||||||| | ||||||||| |||||||||| Sbjct 207519 TTGCCCATTGTGGAAAATTCCACACTGCTGCCTCCCATTGGAGTTTGGGCCGTGTCTCAA 207460 Query 201 TTCCAATGTGGGGGACCTTCCTCT 224 | ||| ||||| || | |||||| Sbjct 207459 TCCCAGTGTGGCTGATCATCCTCT 207436 >seq569 Length=4400913 Score = 86.0 bits (94), Expect = 1e-14 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | ||| | ||||| ||| ||| | || | || ||| || Sbjct 254608 AAAAGAAGTTCACGACTCGTGGG-CCTTCTACCTCCACACGACATTGCACCGTCAAGCTT 254550 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| | |||| || ||||| ||||||||||||| ||||| |||||| || |||||||| Sbjct 254549 TCGCCTATTGCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCATGTCTCAG 254490 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | |||||| || | ||| ||| | | || ||| | || Sbjct 254489 TCCCAGTGTGGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATT 254430 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 254429 GCCTCACCAACTAGCTAAT 254411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068411213312