Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq3956 190 4e-46
seq74 107 4e-21
seq35238 102 2e-19
seq57 102 2e-19
seq86 96.9 7e-18
seq652 89.7 1e-15
seq569 86.0 1e-14
>seq3956
Length=4762
Score = 190 bits (210), Expect = 4e-46
Identities = 166/205 (81%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
||||| ||||||| || || || ||||| |||||| | ||||||| |||| ||
Sbjct 216 AAAGAGCTTTACAACCCTAAGG-CCGTCATCACTCACGCGGCATGGCTGGATCAGGCTTG 158
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 157 CGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTTTGGGCCGTGTCTCAGT 98
Query 202 TCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTA 261
||||||||| | || |||||||||| | ||||| ||||| | | ||||||||||||
Sbjct 97 CCCAATGTGGCTGGCCATCCTCTCAGACCAGCTATCGATCGTCGCCATGGTGGGCCGTTA 38
Query 262 CCCCGCCTACTACCTAATGGAACGC 286
||||||| | | ||||| ||||||
Sbjct 37 CCCCGCCATCCAGCTAATCGAACGC 13
>seq74
Length=10145792
Score = 107 bits (118), Expect = 4e-21
Identities = 144/199 (72%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | |||| | ||||| ||| ||| | | | ||| |||| ||
Sbjct 514397 AAAAGAAGTTCACGACCCGTGGG-CCTTCTACCTCCACACGGCATTGCTCCATCAGGCTT 514455
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| |||||| || ||||| |||||||||||||| ||||||| ||| |||||||||||
Sbjct 514456 TCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCATAGGAGTCTGGGCCGTGTCTCAG 514515
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | ||||||| || | ||| ||| | | || ||| || |
Sbjct 514516 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTAAT 514575
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 514576 GCCTCACCAACTAGCTAAT 514594
>seq35238
Length=927
Score = 102 bits (112), Expect = 2e-19
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 169 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 110
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 109 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 50
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263
||| | ||| |||| | |||| ||| ||| |||||
Sbjct 49 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACC 11
>seq57
Length=727578
Score = 102 bits (112), Expect = 2e-19
Identities = 141/196 (72%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 84 AGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCG 143
|||||||||||| ||| || |||| ||| || || | | ||| |||| || |||
Sbjct 288459 AGAAGTTTACAACTCGT-GAGCCTTTTACCTCCATGCAGCATTGCTCCGTCAGGCTTTCG 288401
Query 144 TCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTC 203
|||||| || |||||||| |||| |||||| ||||||| ||| ||||||||||||||
Sbjct 288400 CCCATTGTAGAAAATTCCTCATTGCTACCTCCCTTAGGAGTCTGGGCCGTGTCTCAGTTC 288341
Query 204 CAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACC 263
| ||||| | | |||||| || | |||| ||| | | || ||| || || ||
Sbjct 288340 TAGTGTGGCTTATCATCCTCTTGGATCAACTATTGATCATCGTCTTGGTAAGCTATTGCC 288281
Query 264 CCGCCTACTACCTAAT 279
||| |||| |||||
Sbjct 288280 TTGCCAACTAGCTAAT 288265
>seq86
Length=7715951
Score = 96.9 bits (106), Expect = 7e-18
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192
|||| || | | |||||| || || || ||||||||||||||||||| |||||| |||
Sbjct 6354733 TCAGGCTTTTGCCCATTGCGAAAAATACCCCACTGCTGCCTCCCGTAGGTGTTTGGGCCG 6354792
Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
||||||||| ||||||||| || | ||||||||||
Sbjct 6354793 TGTCTCAGTCCCAATGTGGTTGATCATCCTCTCAGA 6354828
>seq652
Length=2384379
Score = 89.7 bits (98), Expect = 1e-15
Identities = 107/144 (74%), Gaps = 1/144 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| | | |||||| | || | ||| ||||| | | || |||| ||
Sbjct 207578 AAAAGAAGTTCATGACCCGTAGGCCTTTTA-CCTCCACGCGGCATTACTCTGTCAGGCTT 207520
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
| | |||||| || ||||| |||||||||||||| | ||||||||| ||||||||||
Sbjct 207519 TTGCCCATTGTGGAAAATTCCACACTGCTGCCTCCCATTGGAGTTTGGGCCGTGTCTCAA 207460
Query 201 TTCCAATGTGGGGGACCTTCCTCT 224
| ||| ||||| || | ||||||
Sbjct 207459 TCCCAGTGTGGCTGATCATCCTCT 207436
>seq569
Length=4400913
Score = 86.0 bits (94), Expect = 1e-14
Identities = 139/199 (70%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | ||| | ||||| ||| ||| | || | || ||| ||
Sbjct 254608 AAAAGAAGTTCACGACTCGTGGG-CCTTCTACCTCCACACGACATTGCACCGTCAAGCTT 254550
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| | |||| || ||||| ||||||||||||| ||||| |||||| || ||||||||
Sbjct 254549 TCGCCTATTGCGAAAAATTCCCCACTGCTGCCTCCTGTAGGGGTTTGGGCCATGTCTCAG 254490
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260
| ||| ||||| || | |||||| || | ||| ||| | | || ||| | ||
Sbjct 254489 TCCCAGTGTGGCTGATCACCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGTTATT 254430
Query 261 ACCCCGCCTACTACCTAAT 279
|| | || |||| |||||
Sbjct 254429 GCCTCACCAACTAGCTAAT 254411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068411213312
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |