Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq5649 244 2e-62 seq2566 230 4e-58 seq2225 208 1e-51 seq6293 190 3e-46 seq1165 107 3e-21 seq195 102 1e-19 seq276 98.7 2e-18 seq8723 86.0 1e-14 seq74 75.2 2e-11 >seq5649 Length=13326 Score = 244 bits (270), Expect = 2e-62 Identities = 169/189 (89%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||| | Sbjct 4035 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCATT 4092 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4093 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4152 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| ||| |||| | ||| ||| || || |||||||||||||||||||||| ||||| Sbjct 4153 GAAAGGGATGATCTTATCCAACACGTCCTACACGGATACGAATAGGCTTCGGCCTCGAAC 4212 Query 181 CTTAGCAGG 189 || | |||| Sbjct 4213 CTCATCAGG 4221 >seq2566 Length=12546 Score = 230 bits (254), Expect = 4e-58 Identities = 166/189 (88%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| |||||||||||||||||| || |||| || | | Sbjct 4182 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTATCCGACCGGGTAAT 4239 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4240 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4299 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| ||| ||||| | ||| ||| | || ||||||||||||||||||||| || || Sbjct 4300 GAAAGGGTTGATTTTATCCAGCATGTTTTACATGGATACGAATAGGCTTCGGCCTCGGAC 4359 Query 181 CTTAGCAGG 189 |||| |||| Sbjct 4360 CTTATCAGG 4368 >seq2225 Length=7605 Score = 208 bits (230), Expect = 1e-51 Identities = 161/189 (85%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| |||||||||||||| ||| | ||| | | | | Sbjct 6702 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCAGCTATTTGAAAAAGTATT 6759 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6760 GCTGCGACGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6819 Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180 ||| ||| |||| ||||| || ||||| ||||||||||||||| |||||| |||| Sbjct 6820 GAAAGGGACGATTTTCTCCAATACGTCGTACACGGATACGAATAGGCCTCGGCCTTGAAC 6879 Query 181 CTTAGCAGG 189 || | |||| Sbjct 6880 CTCATCAGG 6888 >seq6293 Length=1356 Score = 190 bits (210), Expect = 3e-46 Identities = 131/148 (89%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 35 TTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGA 94 ||||||| |||||| |||| |||| ||| ||||||||||||||||||||||||||||||| Sbjct 1 TTTTTGCAGCTGTCCGACCGGGCATTGCTGCGAAGCTACCATCTGCTGGATTATGGCTGA 60 Query 95 ACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCG 154 ||||||||||||||||||||||||||||| ||| |||| | ||| |||| |||| || Sbjct 61 ACGCCTCTAAGTCAGAATCCATGCCAGAAAGGGATGATCTTATCCAGCACGCCGTACGCG 120 Query 155 GATACGAATAGGCTTCGGCCCCGAACCT 182 |||||||||||||||||||| || |||| Sbjct 121 GATACGAATAGGCTTCGGCCTCGGACCT 148 >seq1165 Length=8953 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 4936 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4993 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 4994 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 5053 Query 121 GAA 123 ||| Sbjct 5054 GAA 5056 >seq195 Length=1358929 Score = 102 bits (112), Expect = 1e-19 Identities = 98/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 1287868 GTACGAGAGGAACCATTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1287925 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 1287926 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1287985 Query 121 GAA 123 ||| Sbjct 1287986 GAA 1287988 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| || |||| | ||||||| | ||| || ||| || |||| Sbjct 1287644 GTACGAGAGGAACCATTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1287701 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||| ||||||| |||||||||||||||||||||||| || | Sbjct 1287702 GGCGCGAAGCTACCGTGCGCTAGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1287761 Query 121 GAA 123 ||| Sbjct 1287762 GAA 1287764 Score = 87.8 bits (96), Expect = 3e-15 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 9 GGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAA 68 ||||||| || ||| | | ||||||| | ||| || ||| || ||||| |||||| Sbjct 1340075 GGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAA 1340132 Query 69 GCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123 |||||| | ||||||||||| || ||||||||||||||||||||| || |||| Sbjct 1340133 GCTACCGTGCGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCTAGAA 1340187 >seq276 Length=2778623 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||| |||||||| || ||| | | ||||||| | | | || ||| || |||| Sbjct 2724327 GTACGAAAGGAACCGTTGA-TTC-GCACAATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 2724270 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||| | | |||||||||||| |||||||||||||||||||||||| || | Sbjct 2724269 GGCGCGAAGCTATCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2724210 Query 121 GAA 123 ||| Sbjct 2724209 GAA 2724207 >seq8723 Length=891 Score = 86.0 bits (94), Expect = 1e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 || ||||| |||||||||||| | |||||||||||||||||||| |||||||||||||| Sbjct 6 AGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGGCTGAACGCATCTAAGTCAGAATC 65 Query 114 CATGCCAGAA 123 | || |||| Sbjct 66 CGGGCTAGAA 75 >seq74 Length=10145792 Score = 75.2 bits (82), Expect = 2e-11 Identities = 85/113 (75%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || || | | |||| || | ||| || ||| || |||| Sbjct 447411 GTACGAGAGGAACCGTTGATTT--GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 447354 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113 | ||| |||||||| | ||| ||||||| || |||||||||||| |||||| Sbjct 447353 GGCGCAAAGCTACCGTGCGCTAGATTATGACTAGACGCCTCTAAGTTAGAATC 447301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818911320064