Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq5649 244 2e-62
seq2566 230 4e-58
seq2225 208 1e-51
seq6293 190 3e-46
seq1165 107 3e-21
seq195 102 1e-19
seq276 98.7 2e-18
seq8723 86.0 1e-14
seq74 75.2 2e-11
>seq5649
Length=13326
Score = 244 bits (270), Expect = 2e-62
Identities = 169/189 (89%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||| |
Sbjct 4035 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTGTCCGACCGGGCATT 4092
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4093 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4152
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| ||| |||| | ||| ||| || || |||||||||||||||||||||| |||||
Sbjct 4153 GAAAGGGATGATCTTATCCAACACGTCCTACACGGATACGAATAGGCTTCGGCCTCGAAC 4212
Query 181 CTTAGCAGG 189
|| | ||||
Sbjct 4213 CTCATCAGG 4221
>seq2566
Length=12546
Score = 230 bits (254), Expect = 4e-58
Identities = 166/189 (88%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| |||||| |||||||||||||||||| || |||| || | |
Sbjct 4182 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCGGCTATCCGACCGGGTAAT 4239
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4240 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 4299
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| ||| ||||| | ||| ||| | || ||||||||||||||||||||| || ||
Sbjct 4300 GAAAGGGTTGATTTTATCCAGCATGTTTTACATGGATACGAATAGGCTTCGGCCTCGGAC 4359
Query 181 CTTAGCAGG 189
|||| ||||
Sbjct 4360 CTTATCAGG 4368
>seq2225
Length=7605
Score = 208 bits (230), Expect = 1e-51
Identities = 161/189 (85%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||||| |||||| |||||||||||||| ||| | ||| | | | |
Sbjct 6702 GTACGAGAGGAACCGCGGT-TTCAGA-TAATTGGTTTTTGCAGCTATTTGAAAAAGTATT 6759
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6760 GCTGCGACGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 6819
Query 121 GAACGGGGTGATTCTCTCCTGCACATCGTAGTCGGATACGAATAGGCTTCGGCCCCGAAC 180
||| ||| |||| ||||| || ||||| ||||||||||||||| |||||| ||||
Sbjct 6820 GAAAGGGACGATTTTCTCCAATACGTCGTACACGGATACGAATAGGCCTCGGCCTTGAAC 6879
Query 181 CTTAGCAGG 189
|| | ||||
Sbjct 6880 CTCATCAGG 6888
>seq6293
Length=1356
Score = 190 bits (210), Expect = 3e-46
Identities = 131/148 (89%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 35 TTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGA 94
||||||| |||||| |||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1 TTTTTGCAGCTGTCCGACCGGGCATTGCTGCGAAGCTACCATCTGCTGGATTATGGCTGA 60
Query 95 ACGCCTCTAAGTCAGAATCCATGCCAGAACGGGGTGATTCTCTCCTGCACATCGTAGTCG 154
||||||||||||||||||||||||||||| ||| |||| | ||| |||| |||| ||
Sbjct 61 ACGCCTCTAAGTCAGAATCCATGCCAGAAAGGGATGATCTTATCCAGCACGCCGTACGCG 120
Query 155 GATACGAATAGGCTTCGGCCCCGAACCT 182
|||||||||||||||||||| || ||||
Sbjct 121 GATACGAATAGGCTTCGGCCTCGGACCT 148
>seq1165
Length=8953
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 4936 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 4993
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 4994 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 5053
Query 121 GAA 123
|||
Sbjct 5054 GAA 5056
>seq195
Length=1358929
Score = 102 bits (112), Expect = 1e-19
Identities = 98/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 1287868 GTACGAGAGGAACCATTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1287925
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 1287926 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1287985
Query 121 GAA 123
|||
Sbjct 1287986 GAA 1287988
Score = 98.7 bits (108), Expect = 2e-18
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||| || |||| | ||||||| | ||| || ||| || ||||
Sbjct 1287644 GTACGAGAGGAACCATTGA-TTCACAC-AATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 1287701
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||| ||||||| |||||||||||||||||||||||| || |
Sbjct 1287702 GGCGCGAAGCTACCGTGCGCTAGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 1287761
Query 121 GAA 123
|||
Sbjct 1287762 GAA 1287764
Score = 87.8 bits (96), Expect = 3e-15
Identities = 90/115 (78%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 9 GGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAA 68
||||||| || ||| | | ||||||| | ||| || ||| || ||||| ||||||
Sbjct 1340075 GGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAA 1340132
Query 69 GCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCAGAA 123
|||||| | ||||||||||| || ||||||||||||||||||||| || ||||
Sbjct 1340133 GCTACCGTGCGCTGGATTATGACTAAACGCCTCTAAGTCAGAATCCGGGCTAGAA 1340187
>seq276
Length=2778623
Score = 98.7 bits (108), Expect = 2e-18
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||| |||||||| || ||| | | ||||||| | | | || ||| || ||||
Sbjct 2724327 GTACGAAAGGAACCGTTGA-TTC-GCACAATTGGTCATCGTGCTTGGTTGAAAAGCCAGT 2724270
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||| | | |||||||||||| |||||||||||||||||||||||| || |
Sbjct 2724269 GGCGCGAAGCTATCGTGTGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 2724210
Query 121 GAA 123
|||
Sbjct 2724209 GAA 2724207
>seq8723
Length=891
Score = 86.0 bits (94), Expect = 1e-14
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 54 AGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
|| ||||| |||||||||||| | |||||||||||||||||||| ||||||||||||||
Sbjct 6 AGCCAGTGGCGCGAAGCTACCGTGCGCTGGATTATGGCTGAACGCATCTAAGTCAGAATC 65
Query 114 CATGCCAGAA 123
| || ||||
Sbjct 66 CGGGCTAGAA 75
>seq74
Length=10145792
Score = 75.2 bits (82), Expect = 2e-11
Identities = 85/113 (75%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || || | | |||| || | ||| || ||| || ||||
Sbjct 447411 GTACGAGAGGAACCGTTGATTT--GCACAATTAGTCATCGCGCTTGGTTGAAAAGCCAGT 447354
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATC 113
| ||| |||||||| | ||| ||||||| || |||||||||||| ||||||
Sbjct 447353 GGCGCAAAGCTACCGTGCGCTAGATTATGACTAGACGCCTCTAAGTTAGAATC 447301
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818911320064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |