Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq161 149 5e-31 >seq161 Length=5110746 Score = 149 bits (164), Expect = 5e-31 Identities = 493/755 (65%), Gaps = 14/755 (2%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| ||| |||| | | || ||| |||||||| ||||| || || ||||||| Sbjct 1383825 TGTTCCCTATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCT 1383884 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAG-CGTTTATCGAGC 61182 |||| | |||||||| || | ||| | ||| | | ||||||| | | | ||| | Sbjct 1383885 GGACCGCCGAGGAGGTTGACCTCTCCCAGGACCTCCGTCACTGGGACTCCCTCACCGA-C 1383943 Query 61183 GGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTC 61242 | || | || ||| | | || | | || ||||| ||||| || ||||| |||||| Sbjct 1383944 GACGAGCGCCACTTCGTCACCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTC 1384003 Query 61243 AATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTC 61302 ||||| | | || ||| | ||||||| || | || ||||| || ||| Sbjct 1384004 CTCGAGAACCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTC 1384063 Query 61303 TACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGAT 61362 |||||||||||||| ||||| ||||| ||||||| ||||||||||| | ||| |||| Sbjct 1384064 TACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAG 1384123 Query 61363 ACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCG 61422 || ||| ||| ||| || || || || | ||| || |||| || | || Sbjct 1384124 ACCTACGTCAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCC 1384183 Query 61423 GCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTT 61482 || || || || ||||| |||||| || ||| || | | | || | | || Sbjct 1384184 GCCGTCGCTCGCAAGGCGGACTGGGCCCTCCGCTGGGTCGACGG--CGCCGAGT-CCTTC 1384240 Query 61483 GGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCC 61542 | || || | || || || || |||||||| | || ||| || || | Sbjct 1384241 GCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGC 1384300 Query 61543 GCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTG 61602 || ||||| ||| | ||||| || || || ||||| || || |||||| || ||| | Sbjct 1384301 GCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTC 1384360 Query 61603 ATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTG 61662 || || || ||||||||| | || || || || || |||| | | |||| ||| Sbjct 1384361 ATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTGCTCT--ACTCGCT-GCTG 1384417 Query 61663 GTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAA 61722 || ||| |||||||| ||| | | ||| || || ||||| || ||||| Sbjct 1384418 AAGAGGAAGCCGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAG 1384477 Query 61723 CAGGAATT--TCTGACTGACGCTTTGCCCGT-CTCACTCATCGGCATGAATTGTGGACTA 61779 ||| || |||| ||||| | ||||| | | || | || ||||| | | || Sbjct 1384478 AGGGAGTTCGTCTG--CGACGCGCT-CCCGTGCGCCCTGGTGGGGATGAACCGGGACCTC 1384534 Query 61780 ATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT 61814 ||| ||||| || || || || ||||||||||| Sbjct 1384535 ATGGGCCAGTACATCGAGTTCGTCGCCGACCGTCT 1384569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397391745184640