Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq87 123 1e-26 seq53 118 6e-25 seq297 113 3e-23 seq232 82.4 4e-14 >seq87 Length=929300 Score = 123 bits (136), Expect = 1e-26 Identities = 97/117 (83%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | ||||| | |||||| || Sbjct 908344 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCC 908285 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||||||||||| ||||| |||| |||||| |||| ||||||||||||||||| Sbjct 908284 AATCCCTAGTCGGCATCGTTTATGGTTGAGACTAGGACGKTATCTGATCGTCTTCGA 908228 >seq53 Length=1204468 Score = 118 bits (130), Expect = 6e-25 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| |||||||| | ||||| | |||||| || Sbjct 475401 GAACCCAAAGACTTTGATTTCTCATAAGGTGCTGGCGGAGTCCTTAAAGCAACATCCGCC 475342 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| ||| |||||||||||||||||| Sbjct 475341 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACKGTATCTGATCGTCTTCGA 475285 >seq297 Length=190700 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||||||||||||||||| ||||||| | ||||| | |||||| | Sbjct 190220 GAACCCAAAGACTTTGATTTCTCATAAGGTGTTGGCGGAGTCCTTAAAGCAACATCCGTC 190161 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 190160 AATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 190104 >seq232 Length=302072 Score = 82.4 bits (90), Expect = 4e-14 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 51 AACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCG 110 |||||| || |||||| |||||||| ||||| |||| |||||| ||| ||||||||||| Sbjct 35699 AACATCCGCCAATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACRGTATCTGATCG 35758 Query 111 TCTTCGA 117 ||||||| Sbjct 35759 TCTTCGA 35765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278397254280