Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq16 226 7e-57 seq66 136 1e-29 seq41 102 2e-19 seq67 82.4 2e-13 >seq16 Length=2424762 Score = 226 bits (250), Expect = 7e-57 Identities = 296/409 (72%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| || |||||| |||||||||||||||||||||| ||| ||| Sbjct 2062810 TATCTGGGGAATAAGCATCGCCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 2062869 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 2062870 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 2062929 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 2062930 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 2062989 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 2062990 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 2063049 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 2063050 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 2063109 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 2063110 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 2063169 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 2063170 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTACCCCGCCTGGGGAGTAC 2063218 >seq66 Length=1109260 Score = 136 bits (150), Expect = 1e-29 Identities = 141/185 (76%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 ||| ||||| | |||||| | |||||||| | |||||| ||||||| || |||| | Sbjct 956530 ACTTGAGTGAGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTAC 956471 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 | |||||| |||| ||||||||||| | ||||| || |||||| | |||||| Sbjct 956470 GAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACAGACGCTGGGGTGCGAAAG 956411 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAG 346 | |||||||| ||| |||||||||||||||||||||| ||| |||| || || ||| Sbjct 956410 CATGGGGAGCGAACGRGATTAGATACCCTGGTAGTCCATGCCGTAAATGA---CATGTAG 956354 Query 347 TTGTT 351 ||||| Sbjct 956353 TTGTT 956349 >seq41 Length=1348284 Score = 102 bits (112), Expect = 2e-19 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 25 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGG 84 ||||| ||||||||| |||||||||| |||| ||||||||||| |||| | ||| Sbjct 441792 TAACTCTGTGCCAGCAATTGCGGTAATACATAGGATGCAAGCGTTATCTAGAATGATTGG 441851 Query 85 GCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGG 144 |||||||| | | ||| || | | |||| | | || ||||||| |||| || | | Sbjct 441852 GCGTAAAGTATATGTAGGTGGCTTTTTAAGTCTGTCGTCAAATCCCAAGGCTCAATCCTG 441911 Query 145 GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTA 204 || || || | ||| | || |||| || |||| | |||||| | ||| | Sbjct 441912 GACAAGCGTTGGAAACTACCAAGCTGGAGTATGATAGAGATAGAGGGAATTTCTGGTGGA 441971 Query 205 GCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 | ||||||||||||| | || | | ||||||||| | |||| ||| Sbjct 441972 GTAGTGAAATGCGTAAAGATAGGAAAGAACACCAACGACGAAAGCA 442017 >seq67 Length=1100631 Score = 82.4 bits (90), Expect = 2e-13 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 543756 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 543815 Query 63 AAGCGTTA 70 |||||||| Sbjct 543816 AAGCGTTA 543823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289586433408