Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq20 196 8e-48 seq329 170 3e-40 seq49 163 5e-38 seq3 159 6e-37 seq223 149 1e-33 >seq20 Length=2098910 Score = 196 bits (216), Expect = 8e-48 Identities = 147/172 (85%), Gaps = 7/172 (4%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1657719 TCATCAGTAAAGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 1657778 Query 91 TTAGTGGG--TGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 || ||||| | |||||||||| ||| |||||||||||| | | |||||||| Sbjct 1657779 TTGGTGGGTATACACAATCCAACACTTGGTGAATTCTGCTTC-----AAAATGAAGAGCC 1657833 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 ||||||||||||| |||||||||||| |||||||| ||||| |||||||||| Sbjct 1657834 GACATCGAAGGATAAAAAAGCAACGTTGCTATGAATGCTTGACTGCCACAAG 1657885 >seq329 Length=160201 Score = 170 bits (188), Expect = 3e-40 Identities = 132/157 (84%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 137 ATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA 196 |||||||||| ||||||||||||||||| || | | ||||||||| ||||||| ||||| Sbjct 73977 ATAGGAAGAGACGACATCGAAGGATCAATTAGAAGCATCGCTATGACCGCTTGGTTGCCA 73918 Query 197 CAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACT 256 |||||| |||||||| |||||||||||||| |||||||| | ||||||| || || || Sbjct 73917 TAAGCCAATTATCCCTATGGTAACTTTTCTGACACCTCTACCTTCAAATTCTGAAGGTCT 73858 Query 257 AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 |||||||| || || ||| ||| || |||| |||||| Sbjct 73857 AAAGGATCAATTGGGCACCCTTCCACGGTTCGTATTC 73821 >seq49 Length=1248075 Score = 163 bits (180), Expect = 5e-38 Identities = 141/175 (81%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||| |||||| ||||||||||||||||||||| || |||||||||| || || | Sbjct 446851 GAATTATGCTTCATAATGATAGGAAGAGCCGACATCAAATGATCAAAAAGTAATGTTATT 446792 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||| | | ||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 446791 ATGAATGTCGGATTGCCACAAGTTAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGC 446732 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||| || || || || |||| ||| ||| |||| ||||||| ||||| Sbjct 446731 TTCAAATTCTGAAGGTCTTAATGATCTATATACCATGCTTTAATGGTTTATATTC 446677 >seq3 Length=6378990 Score = 159 bits (176), Expect = 6e-37 Identities = 116/134 (87%), Gaps = 9/134 (7%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAA-CCCAGCTCACGTTCCCT 89 ||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||| Sbjct 3960251 TCATCAGTAGGATAAAACTAACATGTCTCATGACGGTCTAAACCCCAACTCACGTTCCCT 3960192 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||| |||||||||||||||||| |||||||| || |||||||||||||||| Sbjct 3960191 ATTGGTGGGTGAACAATCCAAC--------AATTCTGCATCACAATGATAGGAAGAGCCG 3960140 Query 150 ACATCGAAGGATCA 163 ||||| |||||||| Sbjct 3960139 ACATCAAAGGATCA 3960126 >seq223 Length=319659 Score = 149 bits (164), Expect = 1e-33 Identities = 131/162 (81%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 ||||||||||| | ||||| | | |||| |||| ||||| || |||||||||||||| Sbjct 158199 CTGTCTCATGATGATCTAAGTCTAACTCAAGTTCTCTATTGATGAGTGAACAATCCAACA 158140 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 ||| ||||| ||||| ||||||||||||||| ||| ||||||||||||| ||| Sbjct 158139 CTTGT-GAATTTTGCTTTACAATGATAGGAAGAGCCAGCATTGAAGGATCAAAAAACAAT 158081 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 || ||||||||| ||| | | ||||||||||||||||| ||| Sbjct 158080 GTAGCTATGAACACTTTGTTACCACAAGCCAGTTATCCTTGT 158039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854391011712