Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq65 230 8e-58 seq191 210 8e-52 seq180 167 8e-39 seq1052 109 2e-21 seq83 107 7e-21 seq337 96.9 1e-17 seq9 91.5 5e-16 seq7 91.5 5e-16 seq72 89.7 2e-15 seq43 82.4 3e-13 seq32 80.6 1e-12 >seq65 Length=1114111 Score = 230 bits (254), Expect = 8e-58 Identities = 310/424 (73%), Gaps = 27/424 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 996463 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 996522 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 996523 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 996582 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 996583 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 996642 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||| || |||||||||||||||||||| || || |||| Sbjct 996643 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 996695 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 996696 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 996750 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || | ||| | || | ||||||| || ||||||||| Sbjct 996751 TCCT----GG----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 996802 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| | Sbjct 996803 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 996862 Query 550 GGAG 553 |||| Sbjct 996863 GGAG 996866 >seq191 Length=394705 Score = 210 bits (232), Expect = 8e-52 Identities = 302/418 (72%), Gaps = 27/418 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 29860 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 29919 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||| ||| || Sbjct 29920 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTGCACTTAGT 29979 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 29980 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 30039 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | | ||| || |||| ||||||||||||||| || || |||| Sbjct 30040 ACAATTA----CCCCATGAAGACTTGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 30092 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | ||| |||||||||||||| |||||||| |||| | Sbjct 30093 CCAAGC--CACTGCCTATGAGTCGTCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 30147 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || | ||| | || | ||||||| || ||||||||| Sbjct 30148 TCCT----GG----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 30199 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACC 547 |||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| Sbjct 30200 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACC 30257 >seq180 Length=429325 Score = 167 bits (184), Expect = 8e-39 Identities = 259/361 (72%), Gaps = 27/361 (7%) Strand=Plus/Plus Query 211 CATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTC 270 ||||| || | | |||||| | ||| ||||| | ||||||| || | |||| ||||| Sbjct 327371 CATCCGCTGATTCTTCAACATCAGTCGGTTCAGACCTCCACTTAGTTTCACCCAAGCTTC 327430 Query 271 AACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGATC-GTGCCACTCATACGCCC 328 | |||| |||||||||||||| | |||||||| | | | ||| || | |||| Sbjct 327431 ATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATT----GCCC 327486 Query 329 TATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAACCTCGCGACACAAC 384 || |||||||||||||||||||| || || | ||||| || ||| | Sbjct 327487 CATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAACCAAGC--CACTGC 327541 Query 385 GCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACT 443 | | |||| |||||||||||||| |||||||| |||| || ||| || Sbjct 327542 CTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGA--GT-CCT----GG---- 327590 Query 444 TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGT 503 || |||| || | ||| | || | ||||||| || ||||||||||| ||| ||||| Sbjct 327591 TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCACTCACCGATGGGGGT 327650 Query 504 ACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCT 563 ||||||||| ||||||||||||||| | | |||||||||||| |||||||||||| || Sbjct 327651 TCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTTAGCCT 327710 Query 564 T 564 | Sbjct 327711 T 327711 >seq1052 Length=1004 Score = 109 bits (120), Expect = 2e-21 Identities = 104/132 (79%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 272 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 331 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| |||||||||||| |||| || ||||||||| Sbjct 332 TTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTA 391 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 392 GAGGGTGGTCCC 403 Score = 87.8 bits (96), Expect = 7e-15 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 192 TTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCAC 251 |||||||||| ||||| ||||||||| | ||| | || || ||||||||||||||||| Sbjct 1 TTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAA 60 Query 252 GCGGTCTTA-CCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | | ||| | | ||||||||||| ||||| |||||| | | |||||||| Sbjct 61 GGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 115 >seq83 Length=941602 Score = 107 bits (118), Expect = 7e-21 Identities = 296/447 (66%), Gaps = 34/447 (8%) Strand=Plus/Plus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 ||| |||| || | |||| ||||||||||| || | ||| || || | ||||||| Sbjct 811679 CTGTACCTCAACGTATTTTAGGGAGAACCAGTTAGCTTTGGGTTCGAGTGACATTTCACC 811738 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||||| ||||| || | |||||||| | ||| ||||| | |||||| | Sbjct 811739 CCTAACCACAACTCATCTGCTGATTTTTCAACATCAGTCGGTTCAGACCTCCATTTAATT 811798 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTGC 315 | |||| ||||| |||| |||||||||||||| | ||| | | | | || Sbjct 811799 TCACCCAAACTTCATCCTGGTCATGGATAGATCAC------CCAGGTCCATAAGCAGTAA 811852 Query 316 CACTCATACGCCCTAT-TCGGACTCGCTTTCGCTACGGCTACCCCACACG---GGTTAAC 371 || | |||| || |||| |||| |||||||||| || | | ||||| Sbjct 811853 CAAT----TGCCCCATGAAAGACTTGCTTCCGCTACGGCT--CCGATGAGTTCCCTTAAC 811906 Query 372 CTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 | || ||| || | | || ||||||||||||| |||| || ||| Sbjct 811907 CATGC--CACTACCTATGAGTCATCAGCTCATTCTTCAATCGGCATGCGGTC-------- 811956 Query 431 CCTAAAAGGCACT-TCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 |||| | | || ||| || | ||| | | | |||||| || || |||||| Sbjct 811957 ----AAAGTCCTTGTCTCCTCACACTGCTTGGAATCTTACAGTTTCATGTTCTCTTTCAC 812012 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 ||| | | ||| ||||||||| |||||||||| |||| | | |||||||||||| | Sbjct 812013 TCCTTGATGGAGGTTCTTTTCACCCTTCCCTCACGATACTACTTCACTATCGGTCACCCA 812072 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCC 576 ||||||||| | ||| |||||||| Sbjct 812073 GGAGTATTTGGCCTTGCAAGGTGGTCC 812099 >seq337 Length=164646 Score = 96.9 bits (106), Expect = 1e-17 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 499 GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTT 558 ||||| ||||||||| ||||||||||||||| | | |||||||||||| |||||||||| Sbjct 140430 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATTT 140371 Query 559 AGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 || ||| |||||||| | |||||||||| ||| || Sbjct 140370 AGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 140330 >seq9 Length=3736781 Score = 91.5 bits (100), Expect = 5e-16 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || |||||| ||| || ||||| ||||||||| || |||||||||||| Sbjct 3529853 GGTTTCATGTTCTATTTTACTTCCTCATGGGGGTTCTTTTCACCATTTCCTCACGGTACT 3529794 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | | |||||| ||||| || ||||||||| ||| ||||||| | |||||||| Sbjct 3529793 ACTTCACTATCGATCACCCAGAAGTATTTAGCCTTGCAAGGTGGTCTTG-GTGATTCACA 3529735 Query 590 CGAAATTTCA 599 ||| ||| || Sbjct 3529734 CGAGATTCCA 3529725 >seq7 Length=5085854 Score = 91.5 bits (100), Expect = 5e-16 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 150 GCATTTCGGGGAGAACCAGCTA-TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAG 208 ||||||| ||| |||||||||| | | | || || |||| ||| ||||||| ||||| Sbjct 2931648 GCATTTCAGGGGGAACCAGCTAGTTTTGGA-TTCGAGTGGCATTTTACCCCTAACCACAA 2931590 Query 209 GTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCT 268 ||||| | | | |||||| | | | |||||| ||||||| || | |||| ||| Sbjct 2931589 CTCATCTGTTGATTCTTCAACATCATTCGGTTCGAACCTCCACTTAGTTTCACCCAAGCT 2931530 Query 269 TCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||| |||| |||||||||||||| | |||||||| Sbjct 2931529 TCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTC 2931493 >seq72 Length=1061713 Score = 89.7 bits (98), Expect = 2e-15 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||| ||||||||||||||||| ||||| ||||||||| | ||| | || || ||||||| Sbjct 1025394 TTGGTTGGCCTTTCACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTT 1025335 Query 241 CGGTCCTCCACGCGGTCTTA-CCCGCGCTTCAACCTGCCCATGG 283 |||||||||| | | ||| | | ||||||||||| ||||| Sbjct 1025334 CGGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGG 1025291 >seq43 Length=1334049 Score = 82.4 bits (90), Expect = 3e-13 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 178 AGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGG 237 |||| || |||| |||||| ||| ||||| ||| | || | | |||||| | ||| | Sbjct 417927 AGTTCGAATGGCATTTCACTACTAACCACAACTCACTCGCTGATTCTTCAACATTAGTCG 417868 Query 238 GTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGC 297 |||||| ||||||| || | |||| |||||| |||| |||||||||||||| | Sbjct 417867 GTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGG 417808 Query 298 TTCGGGTC 305 |||| ||| Sbjct 417807 TTCGAGTC 417800 >seq32 Length=1562216 Score = 80.6 bits (88), Expect = 1e-12 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTG 531 ||||| || ||| ||||||| ||| || || |||| |||| ||||||||||||||| Sbjct 1196474 TTTCATGTTCTAATTCACTCTCCGAAGGGAGTTCTTTCCACCATTCCCTCACGGTACTAC 1196533 Query 532 TCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTC 575 | | |||| |||||| |||||||||| | ||| ||||||| Sbjct 1196534 TTCACTATTAGTCACCCAGGAGTATTTTGCCTTGCAAGGTGGTC 1196577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817580878848