Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq16 215 1e-53 seq3 107 4e-21 seq8 84.2 4e-14 seq357 77.0 6e-12 >seq16 Length=2424762 Score = 215 bits (238), Expect = 1e-53 Identities = 232/305 (76%), Gaps = 18/305 (6%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || ||||||||||||||||||||| Sbjct 2062748 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAG 2062689 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||| | || ||||| ||| Sbjct 2062688 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGAT 2062629 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| |||||| ||||||||||| |||||| | ||||||||| || | Sbjct 2062628 CATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGG 2062569 Query 181 GC-GATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTT 239 || ||| || || ||| ||||| | || | ||||||||| Sbjct 2062568 GCGGATTCCTCCTT------------TTGC--TCCTC--AGCGTACGGGGTATTAGCAGC 2062525 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 |||||||| ||| |||| ||| || |||||||| || ||| |||||||||||||||| Sbjct 2062524 CGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCG 2062466 Query 300 CCACT 304 ||||| Sbjct 2062465 CCACT 2062461 >seq3 Length=6378990 Score = 107 bits (118), Expect = 4e-21 Identities = 79/92 (86%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | || || |||| ||||||| | || || ||||||||||||||||||||||||||| Sbjct 1070323 GCTTCGTCGGGTTTTCGCCCATTGCGAAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 1070264 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCA 98 ||| ||||||||||||||| |||||| | ||| Sbjct 1070263 GGGTCGTGTCTCAGTCCCAGTGTGGCTGATCA 1070232 >seq8 Length=4047118 Score = 84.2 bits (92), Expect = 4e-14 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 224 ATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGT 283 ||| |||||||||| ||||||||| ||| |||| ||| ||||||||||| || | || Sbjct 2010006 ATGGGGTATTAGCGGTCGTTTCCAGCTGTTGTTCCCCTCCCAAAGGCAGGTT-CTTATGT 2010064 Query 284 GTTACTCACCCGTCCGCCACT 304 ||||||||| ||||||||||| Sbjct 2010065 GTTACTCACACGTCCGCCACT 2010085 >seq357 Length=144228 Score = 77.0 bits (84), Expect = 6e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||||| || || | ||||| ||||||||||||| Sbjct 140376 GGCATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCTCCACTACTGCCTCCCGTAG 140317 Query 61 GAGTCTG 67 ||||||| Sbjct 140316 GAGTCTG 140310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998389496832