Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq16 268 2e-69 seq3 129 1e-27 seq257 96.9 8e-18 seq357 95.1 3e-17 seq8 93.3 1e-16 seq348 80.6 7e-13 >seq16 Length=2424762 Score = 268 bits (296), Expect = 2e-69 Identities = 305/407 (75%), Gaps = 30/407 (7%) Strand=Plus/Minus Query 8 ACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTG 67 || ||||| ||||||||| | | |||||||||| ||| | |||||||| ||||||||| | Sbjct 2062776 ACGACCCGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCG 2062717 Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 || |||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 2062716 GAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 2062657 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||||||||| ||||||||| |||| |||||| ||| || ||| || | |||||| Sbjct 2062656 TGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACT 2062597 Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247 |||||||| | | | | ||| || | || ||| ||| |||| || Sbjct 2062596 AGCTAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCC 2062548 Query 248 TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTT 307 | | || || | ||||||||| |||||||||| ||| | ||||||| ||||| | Sbjct 2062547 T-CAGCG-TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGT 2062490 Query 308 TCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTA 367 || | | |||||||||||||||||||| ||| || || |||| Sbjct 2062489 TCTTACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------ 2062447 Query 368 CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||| |||||||||||||||| || |||| |||||||||| ||||| Sbjct 2062446 CCGTCCGACTTGCATGTGTTAAGCATGCCRCCAGCGTTCATCCTGAG 2062400 >seq3 Length=6378990 Score = 129 bits (142), Expect = 1e-27 Identities = 101/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 14 CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATAT 73 || ||||||||| | | || | || || ||| | || || || ||||||||| | || || Sbjct 1070351 CGTAGGCCTTCTACCTCCATGTGGTATTGCTTCGTCGGGTTTTCGCCCATTGCGAAAAAT 1070292 Query 74 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCA 133 |||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| Sbjct 1070291 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGGTCGTGTCTCAGTCCCAGTGTGGCTGATCA 1070232 Query 134 T 134 | Sbjct 1070231 T 1070231 >seq257 Length=250857 Score = 96.9 bits (106), Expect = 8e-18 Identities = 76/91 (84%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 44 TGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 103 || ||| ||||| | |||||||| ||| |||||| || ||| ||||||| ||||||||| Sbjct 71918 TGGATCGGGCTTTCACCCATTGTCCAAGATTCCCTACGACTGTCTCCCGTGGGAGTCTGG 71859 Query 104 ACCGTGTCTCAGTTCCAGTGTGGCTGGTCAT 134 ||||||||||| | ||||||||| || |||| Sbjct 71858 ACCGTGTCTCAATCCCAGTGTGGTTGATCAT 71828 >seq357 Length=144228 Score = 95.1 bits (104), Expect = 3e-17 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 28 ATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCC 87 ||| | ||||||| ||| |||||||||| ||||||||||| || |||| ||||| ||||| Sbjct 140384 ATATAAGCGGCATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCTCCACTACTGCC 140325 Query 88 TCCCGTAGGAGTCTG 102 ||||||||||||||| Sbjct 140324 TCCCGTAGGAGTCTG 140310 >seq8 Length=4047118 Score = 93.3 bits (102), Expect = 1e-16 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 ||||||| ||| |||| |||||||||||| ||| | |||| | | |||||||||||||| Sbjct 410445 CCATTGTCCAAGATTCTCCACTGCTGCCTTTCGTGGAAGTCCGAATCGTGTCTCAGTTCC 410386 Query 120 AGTGTGGCTGGTCATC 135 |||||||||||||||| Sbjct 410385 AGTGTGGCTGGTCATC 410370 >seq348 Length=150236 Score = 80.6 bits (88), Expect = 7e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 |||| ||||| ||| | |||||||| ||||||||| | || ||||||||||||| ||||| Sbjct 129260 CACGTGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTACCTCC 129201 Query 91 CGTAGGA 97 ||||||| Sbjct 129200 CGTAGGA 129194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222387140352