Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq16 268 2e-69 seq66 140 8e-31 seq41 109 1e-21 seq52 78.8 2e-12 seq81 77.0 8e-12 >seq16 Length=2424762 Score = 268 bits (296), Expect = 2e-69 Identities = 304/405 (75%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| || |||||| |||||||||||||||||||||| ||| || ||| Sbjct 2062814 TGGGGAATAAGCATCGCCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGC 2062873 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||||| | || ||| Sbjct 2062874 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAA 2062933 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||||||||| || || | |||||| | ||| |||| | | ||||||| Sbjct 2062934 TCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCA 2062993 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||| | ||| |||||||||||||||||| || | | |||||||| |||||| Sbjct 2062994 GAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAA 2063053 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | | |||||||||||| ||||||| ||||||| || ||||| Sbjct 2063054 AGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATT 2063113 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTG 363 |||||||| ||||||| ||||||||||||| |||||||| | | | ||| || | Sbjct 2063114 AGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCG-CTGTGCGTATCGACCC 2063172 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| |||||| || ||||||||||| Sbjct 2063173 GTGCAGTGCTGTAGCTAACGCGTTAAGTACCCCGCCTGGGGAGTA 2063217 >seq66 Length=1109260 Score = 140 bits (154), Expect = 8e-31 Identities = 200/281 (71%), Gaps = 4/281 (1%) Strand=Plus/Minus Query 55 GGGGGCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 114 |||||| || ||| | |||||| ||||||||||||||| |||||| ||| | || Sbjct 956638 GGGGGCAAGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTT 956579 Query 115 AGAGGTGAAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAACTGCAGGGCTAGAGTG 173 | ||||||| | | | || | | ||| |||| | ||||| || ||||| Sbjct 956578 GAAAGTGAAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACYCATTCACTTGAGTG 956522 Query 174 CAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACA 233 || || ||||||||| | |||||| |||||||| || |||| | | |||||| Sbjct 956521 AGACAGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACG 956462 Query 234 CCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAG 293 ||| |||||||| ||| |||| || ||| ||| || ||||||| ||||||| Sbjct 956461 CCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACAGACGCTGGGGTGCGAAAGCATGGGGAG 956402 Query 294 CAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGA 334 | ||| |||||||||||||||||||||| |||||||| || Sbjct 956401 CGAACGRGATTAGATACCCTGGTAGTCCATGCCGTAAATGA 956361 >seq41 Length=1348284 Score = 109 bits (120), Expect = 1e-21 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 23 TAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGG 82 ||||| ||||||||| |||||||||| |||| || ||||||||| |||| | ||| Sbjct 441792 TAACTCTGTGCCAGCAATTGCGGTAATACATAGGATGCAAGCGTTATCTAGAATGATTGG 441851 Query 83 GCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCG 142 |||||||| | |||||||| || ||||||| | || ||| | | ||||||| || | Sbjct 441852 GCGTAAAGTATATGTAGGTGGCTTTTTAAGTCTGTCGTCAAATCCCAAGGCTCAATCCTG 441911 Query 143 GGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTA 202 | || || |||||| | ||| |||| || | | |||||| || ||| | Sbjct 441912 GACAAGCGTTGGAAACTACCAAGCTGGAGTATGATAGAGATAGAGGGAATTTCTGGTGGA 441971 Query 203 GCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGC 247 | |||||||||||| | || | | |||||||| | |||| || Sbjct 441972 GTAGTGAAATGCGTAAAGATAGGAAAGAACACCAACGACGAAAGC 442016 >seq52 Length=1204374 Score = 78.8 bits (86), Expect = 2e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG 59 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||| Sbjct 755434 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGG 755377 >seq81 Length=963758 Score = 77.0 bits (84), Expect = 8e-12 Identities = 59/70 (84%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 268 ACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCG 327 || ||| || ||||||| |||||| | ||||||||||||||| ||||||||||| | | Sbjct 271327 ACGCTGGGGTGCGAAAGCATGGGGATCGAACAGGATTAGATACTCTGGTAGTCCATGTTG 271386 Query 328 TAAACGATGA 337 |||||||||| Sbjct 271387 TAAACGATGA 271396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203187342336