Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq53 594 2e-167 seq188 387 4e-105 seq8 163 9e-38 seq11 138 3e-30 seq39 109 2e-21 seq4 87.8 5e-15 seq158 78.8 3e-12 seq36 77.0 1e-11 >seq53 Length=1204468 Score = 594 bits (658), Expect = 2e-167 Identities = 445/513 (87%), Gaps = 13/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 474815 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 474757 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 474756 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 474697 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| | || |||||| ||||| ||| Sbjct 474696 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCTGTCACCCGTCACCACCATAGTA 474637 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 474636 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 474577 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAG----GG 293 | | |||| |||||| ||| |||||| |||||||| || |||| | | || | Sbjct 474576 CGATGGCCGTGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAGAGCCCG 474519 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||| ||||| Sbjct 474518 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATT 474459 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||||||| Sbjct 474458 AGCTCTAGAATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGA 474400 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 ||||||||||||||||||||||||| || | ||| | | ||||||| |||||||||||| Sbjct 474399 TTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCT 474340 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 474339 TAATCTTTGAGACAAGCATATGACTACTGGCAG 474307 >seq188 Length=400109 Score = 387 bits (428), Expect = 4e-105 Identities = 309/366 (84%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 83 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAAT 142 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 3063 TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGCTCCCTCTCCTGAAT 3004 Query 143 CGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAA 202 |||| |||||||| | || |||||| ||||| |||||||||||||||| |||||||| Sbjct 3003 CGAATCCTAATTCTCTGTCACCCGTCACCACCATAGTAGGCCACTATCCTATCATCGAAA 2944 Query 203 GTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAA 261 ||||||||||||||||||||||||| | |||||||| | | |||| |||||| ||| | Sbjct 2943 GTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGA 2884 Query 262 GTTATTATGAATCACCAAGGAGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAA 315 ||||| |||||||| || |||| | | || |||| | |||||||||||||| Sbjct 2883 GTTATCATGAATCATCA--GAGCAACAGGCAGAGCCCGCGTCGACCTTTTATCTAATAAA 2826 Query 316 TACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTA 374 | || ||||||| ||||||||||||| | ||| |||||||||||| |||||| ||||||| Sbjct 2825 TGCATCCCTTCCAGAAGTCGGGGTTTGTTGCACGTATTAGCTCTAAAATTACTACGGTTA 2766 Query 375 TCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTT 434 ||| |||| || ||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 2765 TCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTT 2707 Query 435 CACTGT 440 ||| || Sbjct 2706 CACAGT 2701 >seq8 Length=4047118 Score = 163 bits (180), Expect = 9e-38 Identities = 135/165 (82%), Gaps = 10/165 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| ||||||| | |||| | |||||||||||||||||| Sbjct 526658 GTACTCATTCCAATTACCAGATT-AAAAGAGTCTGGTATTATTATTTATTGTCACTACCT 526600 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||| |||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct 526599 CCCCATGTCAAGATTGAGTAATTTGCGCT---------TTCCTTGGATGTGGTAGCCGTT 526549 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCC 165 |||||| |||||||||| |||| |||||||||| |||| |||| Sbjct 526548 TCTCAGACTCCCTCTCCATAATCAAACCCTAATTTTCCGTCACCC 526504 Score = 127 bits (140), Expect = 6e-27 Identities = 90/102 (88%), Gaps = 1/102 (1%) Strand=Plus/Minus Query 178 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 525353 GTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCG 525294 Query 238 GCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 || | | | || |||||||||| |||||| |||||||| || Sbjct 525293 GCACGATGACCGTGCGATTCGTCGAGTTATCATGAATCATCA 525252 >seq11 Length=3405507 Score = 138 bits (152), Expect = 3e-30 Identities = 107/125 (86%), Gaps = 3/125 (2%) Strand=Plus/Minus Query 105 GGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACC 164 |||| |||||||||||||||| |||||||||||| |||| |||||||||| |||| || Sbjct 1718427 GGAT-TGGTAGCCGTTTCTCATGCTCCCTCTCCGAAATCAAACCCTAATTATCCGTCACT 1718369 Query 165 CGTTGATACCATGGTAGGCCA--CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 | | ||||| |||||||| ||||||||||||| ||||||||||||||| ||||||| Sbjct 1718368 CATCACCACCATAGTAGGCCACTCTATCCTACCATCAAAAGTTGATAGGGCATAAATTTG 1718309 Query 223 AATGA 227 ||||| Sbjct 1718308 AATGA 1718304 >seq39 Length=1364243 Score = 109 bits (120), Expect = 2e-21 Identities = 98/122 (80%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 8 TTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTG 67 |||||||||| |||| | || ||| |||| | |||||||| |||||| | | | | Sbjct 1204915 TTCCAATTACCAGACGCGAAC-AGCTTAGTATTACTATTTATTATCACTATCACTACATA 1204857 Query 68 TCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGG 127 || |||||||||||||||| ||||| || |||||||| |||||||||| ||||||||| | Sbjct 1204856 TCAGGATTGGGTAATTTGCACGCCTACTACCTTCCTTAGATGTGGTAGTCGTTTCTCAAG 1204797 Query 128 CT 129 || Sbjct 1204796 CT 1204795 >seq4 Length=5448771 Score = 87.8 bits (96), Expect = 5e-15 Identities = 117/160 (73%), Gaps = 12/160 (8%) Strand=Plus/Minus Query 129 TCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT------TGAT-ACCATGGTAG 181 ||| |||| | ||||||| |||||| |||||| ||| ||| | ||| || Sbjct 991360 TCCTTCTCTGAAATCGAATTCTAATTTATCGTTACTCGTAATTCATGACCATCATACTAA 991301 Query 182 GCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAA---TGAACCATCGCCGG 238 | | ||||| |||||||||||||||||||| ||||||||||| |||| || || | Sbjct 991300 GTTATTATCCCACCATCGAAAGTTGATAGGGTAGAAATTTGAACTTTGAATCAACG--GC 991243 Query 239 CTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 | || ||||| |||||| ||||||| |||||||| || Sbjct 991242 ATGTTGGTCATGCTATTCGTCAAGTTATCATGAATCATCA 991203 >seq158 Length=564531 Score = 78.8 bits (86), Expect = 3e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 ||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 556943 ATACTTACACATGCATGACTTAATCTTTGAGACAAGCATATGACTACT 556990 >seq36 Length=1471653 Score = 77.0 bits (84), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 6/127 (5%) Strand=Plus/Plus Query 306 ATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTA 365 |||| ||||| || || ||| ||||| | || | ||| ||||||||| |||||||| Sbjct 1245196 ATCTCTTAAATGCATCCTTTCAGAAGTTCGAGTGTGCTGCACGTATTAGCTTTAGAATTA 1245255 Query 366 C-CACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT----GATTTAATGA 420 | |||| ||| || |||| | | ||| |||||| |||| |||| | |||||||||| Sbjct 1245256 CTCACGAGTATTCAAGTAGCA-GATACCATCAAACAAACTATAAATAAATGATTTAATGA 1245314 Query 421 GCCATTC 427 | ||||| Sbjct 1245315 GTCATTC 1245321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510384110592