Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26]
1,052 sequences; 285,613,949 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq6 165 6e-36
>seq6
Length=5093711
Score = 165 bits (182), Expect = 6e-36
Identities = 572/877 (65%), Gaps = 24/877 (3%)
Strand=Plus/Plus
Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123
||||||| || |||||| | || ||| |||||||| || || || || ||||
Sbjct 4851660 TGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCTCGTTCT 4851719
Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183
|||| | ||||||||||| | || | ||| | | ||||| | | || ||
Sbjct 4851720 GGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTGGGAAGGCCTCACGGCCG 4851779
Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243
||| | |||||||| || || |||| ||||| ||||| || || ||||||||
Sbjct 4851780 ACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGATGGTATCGTTC 4851839
Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303
|||||| | | || ||| | ||||||| || || ||||||| | ||||
Sbjct 4851840 TGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGTTGCGGAGGCTAGAGCGTTCT 4851899
Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363
| |||||||| || || || ||||| | ||||| |||||||||||| | | |||| |
Sbjct 4851900 ATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGATGTACAGTTTGTTGCTCGAAA 4851959
Query 61364 CGTACATCAGGGA-GCGGGCG-GAACGTGAAC-GATTGTTCAATGCCATCGAGACGATAC 61420
| ||||||| ||| | | || ||| |||| | |||||| | ||||||||||| |||
Sbjct 4851960 CCTACATCAAGGACTCAGTCGAGAA---GAACAGGTTGTTCCACGCCATCGAGACTGTAC 4852016
Query 61421 C-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477
| ||| | ||| |||||| || ||||| | || |||||| | | | || |
Sbjct 4852017 CTTGCGTCGCGAA---GAAAGCCGAGTGGGCGCTAAAATGGATCGACGG--CTCCGAGT- 4852070
Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537
| |||| || || || | | || || || || ||| | || ||| ||| |
Sbjct 4852071 CGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTCTCGGGAAGTT 4852130
Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597
| ||| || || ||| |||||||||| || |||||||| || |||| ||| || |
Sbjct 4852131 TCTGCGCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACATTCTCAAACG 4852190
Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT 61657
| ||||| || || ||||| ||| |||| || ||||| || ||||| | || ||
Sbjct 4852191 AATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGCTGT----ACTCT 4852246
Query 61658 AT-CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716
| || ||||| | | || || ||| | ||| || || ||||||| |
Sbjct 4852247 CTGATGAGGAATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCCGGCAGGCGGTGGAT 4852306
Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776
||||| |||||| || || || |||| | | | | || ||||| | |
Sbjct 4852307 ATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTGCGCGTTGGTGGGGATGAACGGCGAT 4852366
Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835
|| ||| |||| || || || ||||| ||||| || |||| | | ||| | |
Sbjct 4852367 CTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTGGTAGCCCTAGGGCA--CA 4852424
Query 61836 GC-GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCA 61894
|| ||| || ||| | ||||| || |||| ||||| |||| |||||| | || |
Sbjct 4852425 GCAAGATTTACAATGTACAGAACCCGTTCGATTGGATGGAATTGATATCGCTGCAGGGGA 4852484
Query 61895 AGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931
| || || || |||||||| | || || || |||||
Sbjct 4852485 AAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCA 4852521
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397562902681280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |