Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Momordica_20charantia_20[genbank_20GCA_5F001995035.1_202016-12-26] 1,052 sequences; 285,613,949 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 165 6e-36 >seq6 Length=5093711 Score = 165 bits (182), Expect = 6e-36 Identities = 572/877 (65%), Gaps = 24/877 (3%) Strand=Plus/Plus Query 61064 TGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCT 61123 ||||||| || |||||| | || ||| |||||||| || || || || |||| Sbjct 4851660 TGTTCCCAATTGAGTATCCTCAGATATGGGAAATGTACAAGAAAGCCATGGCCTCGTTCT 4851719 Query 61124 GGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG 61183 |||| | ||||||||||| | || | ||| | | ||||| | | || || Sbjct 4851720 GGACCGCTGAGGAGGTCGACCTCTCACAGGACCTCCGCCATTGGGAAGGCCTCACGGCCG 4851779 Query 61184 GTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCA 61243 ||| | |||||||| || || |||| ||||| ||||| || || |||||||| Sbjct 4851780 ACGAAAAGCATTTCATCTCCCACGTTCTGGCCTTCTTCGCCGCCTCCGATGGTATCGTTC 4851839 Query 61244 ATGAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCT 61303 |||||| | | || ||| | ||||||| || || ||||||| | |||| Sbjct 4851840 TGGAGAATCTCGCCGGCCGGTTCATGAAGGAGGTTCAGGTTGCGGAGGCTAGAGCGTTCT 4851899 Query 61304 ACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATA 61363 | |||||||| || || || ||||| | ||||| |||||||||||| | | |||| | Sbjct 4851900 ATGGCTTCCAAATCGCAATTGAGAACATTCACTCCGAGATGTACAGTTTGTTGCTCGAAA 4851959 Query 61364 CGTACATCAGGGA-GCGGGCG-GAACGTGAAC-GATTGTTCAATGCCATCGAGACGATAC 61420 | ||||||| ||| | | || ||| |||| | |||||| | ||||||||||| ||| Sbjct 4851960 CCTACATCAAGGACTCAGTCGAGAA---GAACAGGTTGTTCCACGCCATCGAGACTGTAC 4852016 Query 61421 C-GGCG--GTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 | ||| | ||| |||||| || ||||| | || |||||| | | | || | Sbjct 4852017 CTTGCGTCGCGAA---GAAAGCCGAGTGGGCGCTAAAATGGATCGACGG--CTCCGAGT- 4852070 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 | |||| || || || | | || || || || ||| | || ||| ||| | Sbjct 4852071 CGTTTGCAGAGCGTCTGATTGGCTTCGCATGTGTGGAAGGTATTTTCTTCTCGGGAAGTT 4852130 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | ||| || || ||| |||||||||| || |||||||| || |||| ||| || | Sbjct 4852131 TCTGCGCCATATTCTGGCTGAAGAAACGAGGCCTTATGCCAGGATTGACATTCTCAAACG 4852190 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCT 61657 | ||||| || || ||||| ||| |||| || ||||| || ||||| | || || Sbjct 4852191 AATTGATCTCCCGAGACGAAGGCCTGCACTGCGATTTCGCGTGCTTGCTGT----ACTCT 4852246 Query 61658 AT-CTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACT 61716 | || ||||| | | || || ||| | ||| || || ||||||| | Sbjct 4852247 CTGATGAGGAATCAACTGAGCGACGACAAAGTGAAGGGGATCGTCCGGCAGGCGGTGGAT 4852306 Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776 ||||| |||||| || || || |||| | | | | || ||||| | | Sbjct 4852307 ATCGAGAGGGAATTCGTGTGCGATGCACTGCCGTGCGCGTTGGTGGGGATGAACGGCGAT 4852366 Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835 || ||| |||| || || || ||||| ||||| || |||| | | ||| | | Sbjct 4852367 CTGATGAGCGAGTACATCGAGTTCGTTGCTGACCGGTTGCTGGTAGCCCTAGGGCA--CA 4852424 Query 61836 GC-GGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCA 61894 || ||| || ||| | ||||| || |||| ||||| |||| |||||| | || | Sbjct 4852425 GCAAGATTTACAATGTACAGAACCCGTTCGATTGGATGGAATTGATATCGCTGCAGGGGA 4852484 Query 61895 AGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | || || || |||||||| | || || || ||||| Sbjct 4852485 AAACCAACTTCTTCGAGAAGAGGGTGGGAGAGTATCA 4852521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397562902681280