Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20399 345 2e-92 seq7299 136 2e-29 seq11287 127 9e-27 >seq20399 Length=272 Score = 345 bits (382), Expect = 2e-92 Identities = 236/263 (90%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 28 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 AGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTT 70 Query 88 CTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 147 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 CTAAAGCTAAATACCGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAA 130 Query 148 AGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 207 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 131 AGCACTTTGGAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAAC 190 Query 208 CAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGTCAGGC 267 |||||||| |||| | || || |||| | | ||||| |||| | |||| ||||| Sbjct 191 CAGACTTGTCCGC-GGTGTTCCGCCGGTCTTCTGACCGGTCTACTC-GCCGCGGGCAGGC 248 Query 268 CAGCATCAGCTCGGGCGGTCGGA 290 || |||| || |||| | |||| Sbjct 249 CATCATCGTCTGGGGCCGCCGGA 271 >seq7299 Length=830168 Score = 136 bits (150), Expect = 2e-29 Identities = 141/181 (78%), Gaps = 3/181 (2%) Strand=Plus/Plus Query 503 CGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 |||| || |||||| ||||||| | |||| | | || | || |||| ||||||| Sbjct 483932 CGTG-GGTTGCACCGCCGACCGACCTTGATCTTCTGAGAAGAGTTCGAGTGAGAGCATGC 483990 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 |||| |||||| |||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 483991 CTGTCGGGACCTAAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCT 484050 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 ||| ||||| ||||||| | | | ||| |||| ||| | || ||||| ||||||||| Sbjct 484051 GGTAGAGGCCCGCAGCGATACCGATATGC-AATCATTCG-CTAACTTGGGAATAGGGGCG 484108 Query 683 A 683 | Sbjct 484109 A 484109 >seq11287 Length=3477367 Score = 127 bits (140), Expect = 9e-27 Identities = 128/164 (78%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAG 93 ||| ||||||| |||||||||||||||||| || ||| | | ||||||||| || || | Sbjct 2751134 TCGGCGAGTCGGGTTGTTTGGGAATGCAGC-CTCAATCGTGCGGTAAATTTTGTCCAAGG 2751192 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 ||||||||| || |||||| ||||| |||||| | || | ||||||||||| | | Sbjct 2751193 CTAAATATTAGCGAGAGACTCATAGCAAACAAGTGCCGCGAGGGGAAGATGAAAAGGAAT 2751252 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||| ||| ||||| ||| || | |||||||||| ||||||| Sbjct 2751253 TTGAAAATAGAGTCAAAGAGTGCTTGAAATTGTTAGGAGGGAAG 2751296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079328593550