Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq7998 174 3e-41 seq8453 165 2e-38 seq549 100 6e-19 seq481 100 6e-19 seq30928 93.3 8e-17 seq4711 93.3 8e-17 >seq7998 Length=612300 Score = 174 bits (192), Expect = 3e-41 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 24038 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 24097 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 24098 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 24156 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 24157 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 24216 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 24217 TGCCGGGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 24266 >seq8453 Length=8773 Score = 165 bits (182), Expect = 2e-38 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 2517 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 2458 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | |||||| | || | | |||||||||||| ||||| Sbjct 2457 GTGCAAAGGTTTCCTCGGGCCAGATGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 2399 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||| ||| | |||| | || |||||||||||||||| | |||| ||||||| ||| Sbjct 2398 GCTTGATTGCAAGACCCACCCATCGAGCAGGGACGAAAGTCAGCCTTAGTGATCCGACGG 2339 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| | ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 2338 TGCCGGGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 2289 >seq549 Length=131338 Score = 100 bits (110), Expect = 6e-19 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 214 GCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGG-ACGAAAGTCGG 272 ||||||||||||||| | |||||||| | |||| | || || |||| ||||||||| | Sbjct 1976 GCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCCGTTGAGTAGGGGACGAAAGTCAG 1917 Query 273 GCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 |||| |||| || |||| || ||||| ||||||||||| || |||| ||| ||| || Sbjct 1916 TCTTAGTGATACGATGGTGTTGGGTGGAAGGGCCGTCGCTCAACAGATATAAGTTACTCT 1857 Query 333 GGGGATA 339 | |||| Sbjct 1856 AGAGATA 1850 >seq481 Length=2891 Score = 100 bits (110), Expect = 6e-19 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 214 GCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGG-ACGAAAGTCGG 272 ||||||||||||||| | |||||||| | |||| | || || |||| ||||||||| | Sbjct 1833 GCAAAGGCAAAAGGGAGCTTGACTGCAAGACCCACCCGTTGAGTAGGGGACGAAAGTCAG 1774 Query 273 GCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCT 332 |||| |||| || |||| || ||||| ||||||||||| || |||| ||| ||| || Sbjct 1773 TCTTAGTGATACGATGGTGTTGGGTGGAAGGGCCGTCGCTCAACAGATATAAGTTACTCT 1714 Query 333 GGGGATA 339 | |||| Sbjct 1713 AGAGATA 1707 >seq30928 Length=1661 Score = 93.3 bits (102), Expect = 8e-17 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 || ||||||||| ||||| | |||||| | | |||| | || || || |||||||||| Sbjct 261 AGGGCAAAGGCAGAAGGGAGCTTGACTACAAGACCCACCTCTCGAGAAGAGACGAAAGTC 202 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 |||| |||||| ||||| | ||||| ||||||||| ||||||||||| ||| Sbjct 201 AACCTTAGTGATCCAATGGTGCAGGGTGGAAGAACCGTCGCTCAACGGATAAAAGTTACT 142 Query 331 CTGGGGATA 339 || |||||| Sbjct 141 CTAGGGATA 133 >seq4711 Length=586766 Score = 93.3 bits (102), Expect = 8e-17 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 || ||||||||| ||||| | |||||| | | |||| | || || || |||||||||| Sbjct 524528 AGGGCAAAGGCAGAAGGGAGCTTGACTACAAGACCCACCTCTCGAGAAGAGACGAAAGTC 524469 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 |||| |||||| ||||| | ||||| ||||||||| ||||||||||| ||| Sbjct 524468 AACCTTAGTGATCCAATGGTGCAGGGTGGAAGAACCGTCGCTCAACGGATAAAAGTTACT 524409 Query 331 CTGGGGATA 339 || |||||| Sbjct 524408 CTAGGGATA 524400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982092498976