Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq8453 217 3e-54 seq6947 206 6e-51 seq1175 206 6e-51 seq5170 201 2e-49 seq3137 147 5e-33 seq3906 140 7e-31 seq818 111 3e-22 seq1842 109 1e-21 seq8992 89.7 1e-15 >seq8453 Length=8773 Score = 217 bits (240), Expect = 3e-54 Identities = 168/197 (85%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || |||||||||| |||| Sbjct 8362 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCACCCA 8419 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 8420 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 8479 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| |||||||||| ||| ||| |||||| Sbjct 8480 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCAC 8539 Query 182 CAACTAGCTAATCCGAC 198 ||||||||||||| ||| Sbjct 8540 CAACTAGCTAATCAGAC 8556 >seq6947 Length=157366 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 21954 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 22011 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 22012 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 22071 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 22072 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 22131 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 22132 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 22171 >seq1175 Length=20146 Score = 206 bits (228), Expect = 6e-51 Identities = 165/196 (84%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || ||||||||||| ||| Sbjct 2352 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGTCCA 2409 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| ||||||||||||||||||||| |||||||||||| ||||| Sbjct 2410 TTGCGGAAAATTCCCCACTACTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 2469 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| || ||||||| ||| ||| |||||| Sbjct 2470 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTGCCTCAC 2529 Query 182 CAACTAGCTAATCCGA 197 ||||||||||||| || Sbjct 2530 CAACTAGCTAATCAGA 2545 >seq5170 Length=1600330 Score = 201 bits (222), Expect = 2e-49 Identities = 162/193 (84%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | || ||||||||| || ||||||||||||||| Sbjct 1499431 TTCACGACCCGTAGGCCTTCTACCTC-CATGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 1499488 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||| || |||||||||||||||||| |||||||||||| ||||| Sbjct 1499489 TTGCGGAAAATTCCCCACTACTACCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 1499548 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| |||||||||||||| |||||| ||| |||| || ||||||| ||| ||| |||||| Sbjct 1499549 GTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTGCCTCAC 1499608 Query 182 CAACTAGCTAATC 194 ||||||||||||| Sbjct 1499609 CAACTAGCTAATC 1499621 >seq3137 Length=1031529 Score = 147 bits (162), Expect = 5e-33 Identities = 98/109 (90%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 90 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTA 149 ||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||| || Sbjct 640751 CGTAGGAGTCTGGGCTGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTA 640692 Query 150 CGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 | |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 640691 CTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 640643 >seq3906 Length=99322 Score = 140 bits (154), Expect = 7e-31 Identities = 99/112 (88%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 87 TCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 |||||||||||||||| |||||||||||||| |||||| ||||||||||||| ||||| Sbjct 85197 TCCCGTAGGAGTCTGGGCCGTGTCTCAGTTC-AGTGTGGTTGATCATCCTCTCGGACCAA 85255 Query 147 TTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| |||| |||||||||| ||| ||| ||||||||||||||||||| ||| Sbjct 85256 CTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGAC 85307 >seq818 Length=518547 Score = 111 bits (122), Expect = 3e-22 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 105 CGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTG 164 ||||||||| | |||||||| ||||||||||||||||||||| ||| |||| |||||| Sbjct 122800 CGTGTCTCAATCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTCA 122859 Query 165 GTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||| ||| |||||| |||||||||||| ||| Sbjct 122860 GTAAGCTATTGCCTCACTAACTAGCTAATCAGAC 122893 >seq1842 Length=350931 Score = 109 bits (120), Expect = 1e-21 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 41 GCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCT 100 |||||||| |||||||||||||||||||| |||||||||| ||||| || || ||||| Sbjct 62161 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTACTGCCCCCTGTGAGAGTCC 62220 Query 101 GGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 || |||||| ||||| | |||||| ||||||||| Sbjct 62221 GGGCCGTGTTTCAGTCCTAGTGTGGTTGATCATCC 62255 >seq8992 Length=393971 Score = 89.7 bits (98), Expect = 1e-15 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 || || | ||| || |||||| | | |||||||||||| || |||||||||| |||| Sbjct 148365 TTCACGACCCGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCACCCA 148422 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 ||| || ||||||||||||||||||||||||||| |||| Sbjct 148423 TTGCAGAAAATTCCCCACTGCTGCCTCCCGTAGGAGGCTGG 148463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071664453280