Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Morus_20notabilis_20[refseq_20GCF_5F000414095.1_202013-08-07] 31,301 sequences; 320,378,613 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5170 609 8e-172 seq2837 269 9e-70 seq18374 185 3e-44 seq15681 116 1e-23 >seq5170 Length=1600330 Score = 609 bits (674), Expect = 8e-172 Identities = 459/535 (86%), Gaps = 9/535 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| || ||| |||||| ||||||| |||| | |||||||||||| |||||| Sbjct 1138474 CTTTTCTTCCACACAAGATTTATGTTCTCGTTGAGCTCATCTTAGGACACCTACGTTATC 1138415 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||| |||||| |||||||||||||||||||||| |||||||| || ||||||| Sbjct 1138414 TTTTAACAAATGTGCTGCCCCAGCCAAACTCCCCACCTAACAATGTCTTCCGCCCGGATT 1138355 Query 127 GGCCCGC----GAAGGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTC 181 || || | ||| |||| ||| ||| | || | ||| || |||| ||| Sbjct 1138354 AACCTGCTGGGGCAGG-CCTTGGGTCCAAAAAGAGGGGCAGTGCC--CCGCCTCCGATTC 1138298 Query 182 ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAAC-GGCTCC 240 | || ||||||||| |||| ||| ||||||||||||||||| | ||| | |||||| Sbjct 1138297 ACGGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCACCGTTTCCGGCTCC 1138238 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1138237 CACTTATACTACACCCTTCAAGTCATTTCACAAAGTCAGACTAGAGTCAAGCTCAACAGG 1138178 Query 301 GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAG 360 |||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 1138177 GTCTTCTTTCCCTGCTGATTCTACCAAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAG 1138118 Query 361 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA 420 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1138117 TAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCACGTCACTAATTAGATGACGA 1138058 Query 421 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGA 480 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1138057 GGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCCCCATTTACCCGCGCTTGGTTGA 1137998 Query 481 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||||||| |||||||||||||| | |||| Sbjct 1137997 ATTTCTTCACTTTGACATTCAGAGCACTGGGCAAAAATCACATTGCGTGAGCATC 1137943 >seq2837 Length=237069 Score = 269 bits (298), Expect = 9e-70 Identities = 246/305 (81%), Gaps = 8/305 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| ||||| | ||||||||||||| ||||| Sbjct 158053 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGTTCATCTTAGGACACCTGTGTTATC 157994 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||| ||||||||||||||||||||||| |||||||||||||||| || ||| |||| Sbjct 157993 TTTTAATAGATGTGCCGCCCCAGCCAAACTACCCACCTGACAATGTCTTCCGCCCAGATC 157934 Query 127 GGC---CCGCGAAGGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGTTCCGCTTCA 182 ||| ||| | || |||| ||| ||| | || | ||| || |||| |||| Sbjct 157933 GGCCTGCCGGGGCGGGCCTTGGGTCCAAAAAGAGGGACAGTG--CCCCGCCTCCGATTCA 157876 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTA-TTTCACTTGCGCCG-AAACGGCTCC 240 | || ||||||||| || | ||| ||||||||| |||||||| ||||| | ||||| Sbjct 157875 TGGAATAAGTAAAATAAAGTTAAAAGTAGTGGTATTTTCACTTTCGCCGTTTCCAGCTCC 157816 Query 241 CACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 157815 CACTTATACTACACCGTTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 157756 Query 301 GTCTT 305 |||| Sbjct 157755 ATCTT 157751 >seq18374 Length=247 Score = 185 bits (204), Expect = 3e-44 Identities = 107/110 (97%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 138 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 197 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 198 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTC 247 >seq15681 Length=223 Score = 116 bits (128), Expect = 1e-23 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 108 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 167 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 168 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634688166048